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BMC genomics, ISSN 1471-2164, 01/2018, Volume 19, Issue 1, pp. 39 - 2
The authors of the original article [1] would like to recognize the critical contribution of core members of the FANTOM5 Consortium, who played the critical... 
Brain | Quality control | Genetic transcription
Journal Article
Journal Article
by P. Carninci and T. Kasukawa and S. Katayama and J. Gough and M. C. Frith and N. Maeda and R. Oyama and T. Ravasi and B. Lenhard and C. Wells and R. Kodzius and K. Shimokawa and V. B. Bajic and S. E. Brenner and S. Batalov and A. R. R. Forrest and M. Zavolan and M. J. Davis and L. G. Wilming and V. Aidinis and J. E. Allen and A. Ambesi-Impiombato and R. Apweiler and R. N. Aturaliya and T. L. Bailey and M. Bansal and L. Baxter and K. W. Beisel and T. Bersano and H. Bono and A. M. Chalk and K. P. Chiu and V. Choudhary and A. Christoffels and D. R. Clutterbuck and M. L. Crowe and E. Dalla and B. P. Dalrymple and B. de Bono and G. Della Gatta and D. di Bernardo and T. Down and P. Engstrom and M. Fagiolini and G. Faulkner and C. F. Fletcher and T. Fukushima and M. Furuno and S. Futaki and M. Gariboldi and P. Georgii-Hemming and T. R. Gingeras and T. Gojobori and R. E. Green and S. Gustincich and M. Harbers and Y. Hayashi and T. K. Hensch and N. Hirokawa and D. Hill and L. Huminiecki and M. Iacono and K. Ikeo and A. Iwama and T. Ishikawa and M. Jakt and A. Kanapin and M. Katoh and Y. Kawasawa and J. Kelso and H. Kitamura and H. Kitano and G. Kollias and S. P. T. Krishnan and A. Kruger and S. K. Kummerfeld and I. V. Kurochkin and L. F. Lareau and D. Lazarevic and L. Lipovich and J. Liu and S. Liuni and S. McWilliam and M. Madan Babu and M. Madera and L. Marchionni and H. Matsuda and S. Matsuzawa and H. Miki and F. Mignone and S. Miyake and K. Morris and S. Mottagui-Tabar and N. Mulder and N. Nakano and H. Nakauchi and P. Ng and R. Nilsson and S. Nishiguchi and S. Nishikawa and ... and RIKEN Genome Explorat Res Grp S and FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and The FANTOM Consortium and Institutionen för fysik, kemi och biologi and Biologiska Beräkningar and Linköpings universitet and Tekniska högskolan
Science, ISSN 0036-8075, 9/2005, Volume 309, Issue 5740, pp. 1559 - 1563
Journal Article
BMC GENOMICS, ISSN 1471-2164, 09/2019, Volume 20, Issue 1, pp. 1 - 17
Background The work of the FANTOM5 Consortium has brought forth a new level of understanding of the regulation of gene transcription and the cellular processes... 
Scrt2 | MIGRATION | SURVIVAL | CELLS | Transcription factors | RNAi | HeliScopeCAGE | Transcriptome | Rfx3 | PROLIFERATION | Transfactivity | Cerebellar development | Motif activity | DATABASE | RHOMBIC LIP | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | GENE-EXPRESSION | GENOME-WIDE | DIFFERENTIATION | Atf4 | REVEALS | Consortia | Cerebellum | Regulators | Sequences | Genes | Gene regulation | Gene expression | Embryos | Bioinformatics | Binding sites
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 04/2015, Volume 11, Issue 4, p. e1004217
Journal Article
Journal Article
by Arner, Erik and Forrest, Alistair R. R and Ehrlund, Anna and Mejhert, Niklas and Itoh, Masayoshi and Kawaji, Hideya and Lassmann, Timo and Laurencikiene, Jurga and Rydén, Mikael and Arner, Peter and Rehli, Michael and Baillie, J. Kenneth and de Hoon, Michiel J. L and Haberle, Vanja and Kulakovskiy, Ivan V and Lizio, Marina and Andersson, Robin and Mungall, Christopher J and Meehan, Terrence F and Schmeier, Sebastian and Bertin, Nicolas and Jørgensen, Mette and Dimont, Emmanuel and Schmidl, Christian and Schaefer, Ulf and Medvedeva, Yulia A and Plessy, Charles and Vitezic, Morana and Severin, Jessica and Semple, Colin A and Ishizu, Yuri and Francescatto, Margherita and Alam, Intikhab and Albanese, Davide and Altschuler, Gabriel M and Archer, John A. C and Babina, Magda and Baker, Sarah and Balwierz, Piotr J and Beckhouse, Anthony G and Pradhan-Bhatt, Swati and Blake, Judith A and Blumenthal, Antje and Bodega, Beatrice and Bonetti, Alessano and Briggs, James and Brombacher, Frank and Burroughs, A. Maxwell and Califano, Anea and Cannistraci, Carlo V and Carbajo, Daniel and Chen, Yun and Chierici, Marco and Ciani, Yari and Clevers, Hans C and Dalla, Emiliano and Davis, Carrie A and Detmar, Michael and Diehl, Alexander D and Dohi, Taeko and Edge, Albert S. B and Edinger, Matthias and Ekwall, Karl and Endoh, Mitsuhiro and Enomoto, Hideki and Fagiolini, Michela and Fairbairn, Lynsey and Fang, Hai and Farach-Carson, Mary C and Faulkner, Geoffrey J and Favorov, Alexander V and Fisher, Malcolm E and Frith, Martin C and Fujita, Rie and Fukuda, Shiro and Furlanello, Cesare and Furuno, Masaaki and Furusawa, Jun-ichi and Geijtenbeek, Teunis B and Gibson, Anew and Gingeras, Thomas and Goldowitz, Daniel and Gough, Julian and Guhl, Sven and Guler, Reto and Gustincich, Stefano and Ha, Thomas J and Hamaguchi, Masahide and Hara, Mitsuko and Harbers, Matthias and Harshbarger, Jayson and Hasegawa, Akira and Hasegawa, Yuki and Hashimoto, Takehiro and Herlyn, Meenhard and Hitchens, Kelly J and Sui, Shannan J. Ho and Hofmann, Oliver M and Hoof, Ilka and Hori, Fumi and ... and Fantom Consortium and FANTOM Consortium and and the FANTOM consortium
PLoS ONE, ISSN 1932-6203, 2014, Volume 9, Issue 3, p. e80274
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 04/2015, Volume 11, Issue 4
  The immediate-early response mediates cell fate in response to a variety of extracellular stimuli and is dysregulated in many cancers. However, the... 
Medical research | Time series | Science | Kinases | Gene expression | Proteins | Studies | Datasets | Signal transduction | Protein synthesis | MicroRNAs | Standard deviation | Cancer
Journal Article
by Hasegawa, Yuki and Tang, Dave and Takahashi, Naoko and Hayashizaki, Yoshihide and Forrest, Alistair R. R and Suzuki, Harukazu and Kawaji, Hideya and Rehli, Michael and Baillie, J. Kenneth and de Hoon, Michiel J. L and Haberle, Vanja and Lassmann, Timo and Kulakovskiy, Ivan V and Lizio, Marina and Itoh, Masayoshi and Andersson, Robin and Mungall, Christopher J and Meehan, Terrence F and Schmeier, Sebastian and Bertin, Nicolas and Jørgensen, Mette and Dimont, Emmanuel and Arner, Erik and Schmidl, Christian and Schaefer, Ulf and Medvedeva, Yulia A and Plessy, Charles and Vitezic, Morana and Severin, Jessica and Semple, Colin A and Ishizu, Yuri and Young, Robert S and Francescatto, Margherita and Alam, Intikhab and Albanese, Davide and Altschuler, Gabriel M and Arakawa, Takahiro and Archer, John A. C and Arner, Peter and Babina, Magda and Baker, Sarah and Balwierz, Piotr J and Beckhouse, Anthony G and Pradhan-Bhatt, Swati and Blake, Judith A and Blumenthal, Antje and Bodega, Beatrice and Bonetti, Alessano and Briggs, James and Brombacher, Frank and Burroughs, A. Maxwell and Califano, Anea and Cannistraci, Carlo V and Carbajo, Daniel and Chen, Yun and Chierici, Marco and Ciani, Yari and Clevers, Hans C and Dalla, Emiliano and Davis, Carrie A and Detmar, Michael and Diehl, Alexander D and Dohi, Taeko and bløs, Finn and Edge, Albert S. B and Edinger, Matthias and Ekwall, Karl and Endoh, Mitsuhiro and Enomoto, Hideki and Fagiolini, Michela and Fairbairn, Lynsey and Fang, Hai and Farach-Carson, Mary C and Faulkner, Geoffrey J and Favorov, Alexander V and Fisher, Malcolm E and Frith, Martin C and Fujita, Rie and Fukuda, Shiro and Furlanello, Cesare and Furuno, Masaaki and Furusawa, Jun-ichi and Geijtenbeek, Teunis B and Gibson, Anew and Gingeras, Thomas and Goldowitz, Daniel and Gough, Julian and Guhl, Sven and Guler, Reto and Gustincich, Stefano and Ha, Thomas J and Hamaguchi, Masahide and Hara, Mitsuko and Harbers, Matthias and Harshbarger, Jayson and Hasegawa, Akira and Hashimoto, Takehiro and Herlyn, Meenhard and Hitchens, Kelly J and Ho Sui, Shannan J and ... and FANTOM Consortium
Scientific reports, ISSN 2045-2322, 2014, Volume 4, Issue 1, p. 5228
Standard culture of human induced pluripotent stem cells (hiPSCs) requires basic Fibroblast Growth Factor (bFGF) to maintain the pluripotent state, whereas... 
INACTIVATION | OXYGEN | INDUCIBLE FACTOR-I | GROUND-STATE | MULTIDISCIPLINARY SCIENCES | SELF-RENEWAL | PROLIFERATION | CAP ANALYSIS | EXPRESSION | LINES | HUMAN EMBRYONIC STEM | Immunohistochemistry | Alkenes | Gene Expression - drug effects | Homeodomain Proteins - metabolism | Humans | Fibroblast Growth Factor 2 - pharmacology | Immunoblotting | Janus Kinases - metabolism | Cell Differentiation - genetics | Stage-Specific Embryonic Antigens - metabolism | Kruppel-Like Transcription Factors - metabolism | Piperidines | Phosphorylation - drug effects | STAT3 Transcription Factor - metabolism | Induced Pluripotent Stem Cells - metabolism | Nanog Homeobox Protein | Induced Pluripotent Stem Cells - drug effects | Cells, Cultured | Reverse Transcriptase Polymerase Chain Reaction | Homeodomain Proteins - genetics | Janus Kinase 1 | Pluripotent Stem Cells - metabolism | Proteins - genetics | Proteins - metabolism | Chemokine CCL2 - pharmacology | Signal Transduction - drug effects | Cell Differentiation - drug effects | Pluripotent Stem Cells - drug effects | Cell Hypoxia - genetics | Kruppel-Like Transcription Factors - genetics | Fibroblast growth factor 2 | Fibroblast growth factor | Cell culture | Phosphorylation | Transcription | Stem cells | Stat3 protein | Hypoxia | Monocyte chemoattractant protein 1 | Pluripotency
Journal Article