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1. Full Text Total lipopolysaccharide from the human gut microbiome silences toll-like receptor signaling
by D'Hennezel, Eva and Abubucker, Sahar and Murphy, Leon O and Cullen, Thomas W
mSystems, ISSN 2379-5077, 11/2017, Volume 2, Issue 6, p. e00046-17
Symbiosis | Lipopolysaccharide | Tolerance | Toll-like receptors | Microbial communities | Microbiome | Commensals | Homeostasis | Lipids | Drug development | Experiments | Lipopolysaccharides | Consortia | Signal transduction | Microbiota | Microorganisms | E coli | Intestine | Bacteria | Tumor necrosis factor-TNF | Standard deviation | Feces | Intestinal microflora | Digestive tract | Cytokines | Digestive system | Data processing | TLR4 protein | Immunological tolerance | Computer applications | Comparative analysis
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2. Full Text Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment
by Nobel, Yael R and Cox, Laura M and Kirigin, Francis F and Bokulich, Nicholas A and Yamanishi, Shingo and Teitler, Isabel and Chung, Jennifer and Sohn, Jiho and Barber, Cecily M and Goldfarb, David S and Raju, Kartik and Abubucker, Sahar and Zhou, Yanjiao and Ruiz, Victoria E and Li, Huilin and Mitreva, Makedonka and Alekseyenko, Alexander V and Weinstock, George M and Sodergren, Erica and Blaser, Martin J
Nature communications, ISSN 2041-1723, 06/2015, Volume 6, Issue 1, pp. 7486 - 7486
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Metagenomics | Drug Administration Schedule | Liver - metabolism | Mice, Inbred C57BL | Transcriptome | Male | Tylosin - pharmacology | Gene Expression Regulation - drug effects | Tylosin - administration & dosage | Animals | Feces - chemistry | Liver - drug effects | Amoxicillin - pharmacology | Aging | Female | Amoxicillin - administration & dosage | Anti-Bacterial Agents - pharmacology | Mice | Drug Therapy, Combination | Energy Metabolism - physiology | Anti-Bacterial Agents - administration & dosage | Index Medicus
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3. Full Text Structure, function and diversity of the healthy human microbiome
by Huttenhower, Curtis and Gevers, Dirk and Knight, Rob and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Creasy, Heather H and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Giglio, Michelle G and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien and Paul Brooks, J and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S. G and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, Wm and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry J and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and Goll, Johannes and Gonzalez, Antonio and Griggs, Allison and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 207 - 214
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Morphology, structure, chemical composition | Microbiology | Bacteriology | Metagenomics | Health | Humans | Male | Biodiversity | Bacteria - genetics | Young Adult | Phenotype | Ecosystem | Adolescent | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adult | Female | Metabolic Networks and Pathways - physiology | Metagenome | Microbiota (Symbiotic organisms) | Research | Biological diversity | Disease | Habitats | Taxonomy | Data processing | Skin | Life sciences | Genomes | Index Medicus
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4. Full Text A framework for human microbiome research
by Methé, Barbara A and Nelson, Karen E and Pop, Mihai and Creasy, Heather H and Giglio, Michelle G and Huttenhower, Curtis and Gevers, Dirk and Petrosino, Joseph F and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien R and Brooks, Paul and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, W and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 215 - 221
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Morphology, structure, chemical composition | Microbiology | Bacteriology | Young Adult | Reference Standards | Humans | Adolescent | Metagenomics - methods | RNA, Ribosomal, 16S - genetics | Adult | Female | Male | Statistics as Topic | Bacteria - genetics | Metagenome | Genetic research | Microbiological research | Genomes | Research | Microbiota (Symbiotic organisms) | Studies | Medicine | Publications | Taxonomy | Genomics | Data processing | Manuscripts | Index Medicus
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5. Full Text The draft genome of the parasitic nematode Trichinella spiralis
by Wilson, Richard K and Taylor, Christina M and Hallsworth-Pepin, Kym and Minx, Pat and Yang, Shiaw-Pyng and Fulton, Robert S and Bhonagiri, Veena and Wang, Zhengyuan and Zarlenga, Dante S and Appleton, Judith and Martin, John and Zhang, Xu and Mitreva, Makedonka and Fulton, Lucinda and Warren, Wesley C and Clifton, Sandra W and McCarter, James P and Yin, Yong and Abubucker, Sahar and Jasmer, Douglas P and Mardis, Elaine R
Nature genetics, ISSN 1061-4036, 03/2011, Volume 43, Issue 3, pp. 228 - 235
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Genetics of eukaryotes. Biological and molecular evolution | Genome, Helminth | Nematoda - genetics | Animals | Base Sequence | Conserved Sequence | Molecular Sequence Data | Trichinella spiralis - genetics | Phylogeny | Sequence Analysis, DNA - methods | Evolution, Molecular | Genomes | Genetic aspects | Research | Trichinosis | Proteins | Studies | Leadership | Lymphatic system | Genes | Nematodes | Parasites | Index Medicus
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6. Full Text Genome of the human hookworm Necator americanus
by Tang, Yat T and Gao, Xin and Rosa, Bruce A and Abubucker, Sahar and Hallsworth-Pepin, Kymberlie and Martin, John and Tyagi, Rahul and Heizer, Esley and Zhang, Xu and Bhonagiri-Palsikar, Veena and Minx, Patrick and Warren, Wesley C and Wang, Qi and Zhan, Bin and Hotez, Peter J and Sternberg, Paul W and Dougall, Annette and Gaze, Soraya Torres and Mulvenna, Jason and Sotillo, Javier and Ranganathan, Shoba and Rabelo, Elida M and Wilson, Richard K and Felgner, Philip L and Bethony, Jeffrey and Hawdon, John M and Gasser, Robin B and Loukas, Alex and Mitreva, Makedonka
Nature genetics, ISSN 1061-4036, 2014, Volume 46, Issue 3, pp. 261 - 269
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Necatoriasis - parasitology | Necator americanus - genetics | Species Specificity | Caenorhabditis elegans - genetics | Humans | Necator americanus - growth & development | Necatoriasis - immunology | Molecular Sequence Data | Male | Host-Parasite Interactions - immunology | Pregnancy | Genome, Helminth | Animals | Necatoriasis - prevention & control | Gene Expression Regulation, Developmental | Female | Necator americanus - immunology | Hookworms | Genetic research | Genetic aspects | Immunologic diseases | Research | Proteins | Studies | Databases | Genomics | Nematodes | Clinical trials | Binomial distribution | Genomes | Tropical diseases | Index Medicus | SCP | genome | hookworm | RNA-Seq | protein microarray | immunoregulation | TAPS protein | anti-inflammation | necatoriasis | nematodes | blood-feeding
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