Articles

Search Articles

Advanced search
Help

Catalogue

Articles

Databases

X
Search Filters
Format Format
Subjects Subjects
Subjects Subjects
X
Sort by Item Count (A-Z)
Filter by Count
cancer (11) 11
humans (11) 11
index medicus (11) 11
gene expression (9) 9
article (6) 6
algorithms (5) 5
diagnosis (5) 5
mutation (5) 5
research (5) 5
biochemical research methods (4) 4
biotechnology & applied microbiology (4) 4
computational biology - methods (4) 4
female (4) 4
gene expression profiling (4) 4
genes (4) 4
genomes (4) 4
oncology (4) 4
software (4) 4
tumors (4) 4
biomarkers (3) 3
biomarkers, tumor - genetics (3) 3
breast neoplasms - genetics (3) 3
cancer biology (3) 3
cell biology (3) 3
cell lines (3) 3
computational biology (3) 3
deoxyribonucleic acid--dna (3) 3
gene expression regulation, neoplastic (3) 3
genetic aspects (3) 3
head (3) 3
health aspects (3) 3
mathematical & computational biology (3) 3
methods (3) 3
mutations (3) 3
neoplasms - genetics (3) 3
prognosis (3) 3
2-gene classifier (2) 2
adolescent (2) 2
adult (2) 2
alternative splicing (2) 2
analysis (2) 2
aneuploidy (2) 2
bioinformatics (2) 2
biology (2) 2
breast cancer (2) 2
carcinogenesis (2) 2
causality (2) 2
cell line, tumor (2) 2
circulating tumor dna (2) 2
classification (2) 2
computer simulation (2) 2
gene regulatory networks (2) 2
gene sequencing (2) 2
gene-expression (2) 2
genetic screening (2) 2
head and neck cancer (2) 2
head and neck neoplasms - genetics (2) 2
identification (2) 2
invasiveness (2) 2
male (2) 2
medical research (2) 2
medicine, experimental (2) 2
medicine, research & experimental (2) 2
methylation (2) 2
microarray data (2) 2
middle aged (2) 2
models, biological (2) 2
molecular biology (2) 2
molecular classification (2) 2
neoplasms (2) 2
ovarian cancer (2) 2
patterns (2) 2
prediction (2) 2
prevalence (2) 2
prostate-cancer (2) 2
proteins (2) 2
research article (2) 2
ribonucleic acid--rna (2) 2
rna-seq (2) 2
sensitivity (2) 2
signal transduction (2) 2
squamous cell carcinoma (2) 2
statistics (2) 2
systems biology (2) 2
transcriptome (2) 2
tumor cells, cultured (2) 2
tumorigenesis (2) 2
urothelial cancer (2) 2
usage (2) 2
women (2) 2
aberration (1) 1
adults (1) 1
age factors (1) 1
aged (1) 1
akt3 (1) 1
alterations (1) 1
alternative splice expression (1) 1
androgen receptor (1) 1
applications notes (1) 1
applied mathematics (1) 1
more...
Language Language
Publication Date Publication Date
Click on a bar to filter by decade
Slide to change publication date range


1. Full Text Detection and localization of surgically resectable cancers with a multi-analyte blood test
by Cohen, Joshua D and Li, Lu and Wang, Yuxuan and Thoburn, Christopher and Afsari, Bahman and Danilova, Ludmila and Douville, Christopher and Javed, Ammar A and Wong, Fay and Mattox, Austin and Hruban, Ralph. H and Wolfgang, Christopher L and Goggins, Michael G and Molin, Marco Dal and Wang, Tian-Li and Roden, Richard and Klein, Alison P and Ptak, Janine and Dobbyn, Lisa and Schaefer, Joy and Silliman, Natalie and Popoli, Maria and Vogelstein, Joshua T and Browne, James D and Schoen, Robert E and Brand, Randall E and Tie, Jeanne and Gibbs, Peter and Wong, Hui-Li and Mansfield, Aaron S and Jen, Jin and Hanash, Samir M and Falconi, Massimo and Allen, Peter J and Zhou, Shibin and Bettegowda, Chetan and Diaz, Luis A and Tomasetti, Cristian and Kinzler, Kenneth W and Vogelstein, Bert and Lennon, Anne Marie and Papadopoulos, Nickolas
Science, ISSN 0036-8075, 02/2018, Volume 359, Issue 6378, pp. 926 - 930
Earlier detection is key to reducing cancer deaths. Here, we describe a blood test that can detect eight common cancer types through assessment of the levels... 
BIOMARKERS | LUNG-CANCER | EVOLUTION | CIRCULATING TUMOR DNA | QUANTIFICATION | MULTIDISCIPLINARY SCIENCES | MUTATIONS | Early Detection of Cancer - economics | Costs and Cost Analysis | Circulating Tumor DNA - genetics | Early Detection of Cancer - methods | Neoplasms - surgery | Humans | Neoplasms - diagnosis | Polymerase Chain Reaction - methods | Neoplasms - blood | Neoplasms - genetics | Hematologic Tests - economics | Neoplasm Proteins - blood | Mutation | Medical examination | Diagnosis | Methods | Blood | Ovarian cancer | Cancer | Stomach | Liver | Biological evolution | Blood tests | Health risks | Patients | Esophagus | Proteins | Liver cancer | Sensitivity | Lungs | Surgery | Biomarkers | Pancreas | Localization | Evolution & development | Deoxyribonucleic acid--DNA
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
2. Full Text Inferring causal molecular networks: Empirical assessment through a community-based effort
by Hill, Steven M and Heiser, Laura M and Cokelaer, Thomas and Linger, Michael and Nesser, Nicole K and Carlin, Daniel E and Zhang, Yang and Sokolov, Artem and Paull, Evan O and Wong, Chris K and Graim, Kiley and Bivol, Adrian and Wang, Haizhou and Zhu, Fan and Afsari, Bahman and Danilova, Ludmila V and Favorov, Alexander V and Lee, Wai Shing and Taylor, Dane and Hu, Chenyue W and Long, Byron L and Noren, David P and Bisberg, Alexander J and Mills, Gordon B and Gray, Joe W and Kellen, Michael and Norman, Thea and Friend, Stephen and Qutub, Amina A and Fertig, Elana J and Guan, Yuanfang and Song, Mingzhou and Stuart, Joshua M and Spellman, Paul T and Koeppl, Heinz and Stolovitzky, Gustavo and Saez-Rodriguez, Julio and Mukherjee, Sach and Al-Ouran, Rami and Anton, Bernat and Arodz, Tomasz and Sichani, Omid Askari and Bagheri, Neda and Berlow, Noah and Bohler, Anwesha and Bonet, Jaume and Bonneau, Richard and Budak, Gungor and Bunescu, Razvan and Caglar, Mehmet and Cai, Binghuang and Cai, Chunhui and Carlon, Azzurra and Chen, Lujia and Ciaccio, Mark F and Cooper, Gregory and Coort, Susan and Creighton, Chad J and Daneshmand, Seyed-Mohammad-Hadi and De La Fuente, Alberto and Di Camillo, Barbara and Dutta-Moscato, Joyeeta and Emmett, Kevin and Evelo, Chris and Fassia, Mohammad-Kasim H and Finotello, Francesca and Finkle, Justin D and Gao, Xi and Garcia-Garcia, Javier and Ghosh, Samik and Giaretta, Alberto and Großeholz, Ruth and Guinney, Justin and Hafemeister, Christoph and Hahn, Oliver and Haider, Saad and Hase, Takeshi and Hodgson, Jay and Hoff, Bruce and Hsu, Chih Hao and Hu, Ying and Huang, Xun and Jalili, Mahdi and Jiang, Xia and Kacprowski, Tim and Kaderali, Lars and Kang, Mingon and Kannan, Venkateshan and Kikuchi, Kaito and Kim, Dong-Chul and Kitano, Hiroaki and Knapp, Bettina and Komatsoulis, George and Krämer, Andreas and Kursa, Miron Bartosz and Kutmon, Martina and Li, Yichao and Liang, Xiaoyu and Liu, Zhaoqi and Liu, Yu and ... and HPN-DREAM Consortium and The HPN-DREAM Consortium
Nature Methods, ISSN 1548-7091, 03/2016, Volume 13, Issue 4, pp. 310 - 322
It remains unclear whether causal, rather than merely correlational, relationships in molecular networks can be inferred in complex biological settings. Here... 
GENE NETWORKS | BAYESIAN NETWORKS | MODELS | BIOCHEMICAL RESEARCH METHODS | SENSITIVITY | VALIDATION | ALGORITHMS | INFERENCE | EXPRESSION DATA | CHALLENGES | SIGNALING NETWORKS | Signal Transduction | Humans | Computational Biology | Gene Expression Profiling | Gene Regulatory Networks | Systems Biology | Protein Interaction Mapping - methods | Algorithms | Neoplasms - genetics | Models, Biological | Computer Simulation | Software | Tumor Cells, Cultured | Causality | Biological research | Physiological aspects | Cellular signal transduction | Research | Molecular biology | Phosphotransferases | Biology, Experimental | Proteins | Cancer
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
3. Full Text A simple and reproducible breast cancer prognostic test
by Marchionni, Luigi and Afsari, Bahman and Geman, Donald and Leek, Jeffrey T
BMC Genomics, ISSN 1471-2164, 05/2013, Volume 14, Issue 1, pp. 336 - 336
Background: A small number of prognostic and predictive tests based on gene expression are currently offered as reference laboratory tests. In contrast to such... 
Gene expression analysis | Genomics | Prediction | Biomarkers | Breast cancer | Top scoring pair | Personalized medicine | Reproducible research | MammaPrint | PREDICTOR | MARKER | 2-GENE CLASSIFIER | SIGNATURE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | Computational Biology - methods | Reproducibility of Results | Breast Neoplasms - genetics | Prognosis | Humans | Breast Neoplasms - diagnosis | Gene Expression Profiling | Software | Cohort Studies | Genetic aspects | Research | Diagnosis | Gene expression | Genetic screening | Methods | Cancer | Medical research | Pharmacogenetics | Medicine, Experimental
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
4. Full Text A novel functional splice variant of AKT3 defined by analysis of alternative splice expression in HPV-positive oropharyngeal cancers
by Guo, Theresa and Sakai, Akihiro and Afsari, Bahman and Considine, Michael and Danilova, Ludmila and Favorov, Alexander V and Yegnasubramanian, Srinivasan and Kelley, Dylan Z and Flam, Emily and Ha, Patrick K and Khan, Zubair and Wheelan, Sarah J and Gutkind, J. Silvio and Fertig, Elana J and Gaykalova, Daria A and Califano, Joseph
Cancer Research, ISSN 0008-5472, 10/2017, Volume 77, Issue 19, pp. 5248 - 5258
The incidence of HPV-related oropharyngeal squamous cell carcinoma (OPSCC) has increased more than 200% in the past 20 years. Recent genetic sequencing efforts... 
DIFFERENTIAL GENE | HEAD | DNA METHYLATION | TRANSCRIPTOME | ONCOLOGY | RNA-SEQ | SQUAMOUS-CELL CARCINOMA | HUMAN-PAPILLOMAVIRUS | NECK | MUTATIONS | GENOME | Prognosis | Alternative Splicing | Follow-Up Studies | Carcinoma, Squamous Cell - genetics | Carcinoma, Squamous Cell - pathology | Carcinoma, Squamous Cell - virology | Humans | Middle Aged | Male | Oropharyngeal Neoplasms - pathology | Case-Control Studies | Proto-Oncogene Proteins c-akt - genetics | Papillomavirus Infections - pathology | Young Adult | Adult | Female | Papillomavirus Infections - virology | Oropharyngeal Neoplasms - genetics | Survival Rate | Oropharyngeal Neoplasms - virology | Papillomaviridae - isolation & purification | Papillomavirus Infections - genetics | Adolescent | Aged | Biomarkers, Tumor - genetics | Neoplasm Staging | Alternative splicing | Squamous cell carcinoma | Statistical analysis | Splicing | Genes | Genomes | Statistical methods | Gene expression | Ribonucleic acid--RNA | Carcinogenesis | Incidence | Gene sequencing | Carcinogens | Cell lines | DNA methylation | Head and neck cancer | Tumorigenesis | Mutation | Methylation | In vitro methods and tests | Deoxyribonucleic acid--DNA | Cancer | Tumors | CpG islands | Index Medicus | oropharynx squamous cell carcinoma | outlier analysis | alternative splice expression | AKT3 | HPV
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
5. Full Text The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations
by Lin, Xue and Afsari, Bahman and Marchionni, Luigi and Cope, Leslie and Parmigiani, Giovanni and Naiman, Daniel and Geman, Donald
BMC Bioinformatics, ISSN 1471-2105, 08/2009, Volume 10, Issue 1, pp. 256 - 256
Background: A major challenge in computational biology is to extract knowledge about the genetic nature of disease from high-throughput data. However, an... 
ANDROGEN RECEPTOR | PROFILES | PROTEIN | BIOCHEMICAL RESEARCH METHODS | TUMOR | PATTERNS | PREDICTION | BREAST-CANCER | DYE BIAS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PROSTATE-CANCER | MATHEMATICAL & COMPUTATIONAL BIOLOGY | MICROARRAY DATA | Computational Biology - methods | Breast Neoplasms - genetics | Humans | Gene Expression Regulation, Neoplastic | Female | Biomarkers, Tumor - genetics | Gene Expression Profiling | Genes, BRCA1 | Usage | Prognosis | BRCA mutations | Breast cancer | Genetic aspects | Research | Biological markers | Health aspects | Risk factors | Computational biology | Studies | Biomarkers | Grants | Gene expression | Classification
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
6. Full Text Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin marks
by Kelley, Dylan Z and Flam, Emily L and Izumchenko, Evgeny and Danilova, Ludmila V and Wulf, Hildegard A and Guo, Theresa and Singman, Dzov A and Afsari, Bahman and Skaist, Alyza M and Considine, Michael and Welch, Jane A and Stavrovskaya, Elena and Bishop, Justin A and Westra, William H and Khan, Zubair and Koch, Wayne M and Sidransky, David and Wheelan, Sarah J and Califano, Joseph A and Favorov, Alexander V and Fertig, Elana J and Gaykalova, Daria A
Cancer Research, ISSN 0008-5472, 12/2017, Volume 77, Issue 23, pp. 6538 - 6550
Chromatin alterations mediate mutations and gene expression changes in cancer. Chromatin immunoprecipitation followed by sequencing (ChIP-Seq) has been... 
SURVIVAL | METHYLATION | SUPER-ENHANCERS | ONCOLOGY | CELL IDENTITY | TRANSCRIPTION | MUTATION | REGIONS | GENE-EXPRESSION | IDENTIFICATION | CANCER | Virus Integration - genetics | Head and Neck Neoplasms - virology | Humans | Chromatin - pathology | Sequence Analysis, DNA | Genome, Human - genetics | Papillomaviridae - genetics | Chromatin Immunoprecipitation | Base Sequence | Cell Line, Tumor | Head and Neck Neoplasms - genetics | Chromatin - genetics | Gene Expression Regulation, Neoplastic - genetics | Enrichment | Chromatin | Squamous cell carcinoma | Integration | Head | Immunoprecipitation | Genomes | Tumor cell lines | Gene expression | Ribonucleic acid--RNA | Gene sequencing | Human papillomavirus | Alterations | Cell lines | Xenografts | Head and neck cancer | Tumorigenesis | Aberration | Mutation | Protocol (computers) | Cancer | Tumors | Chromatin immunoprecipitation | HPV integration | high-throughput data | histone code | head and neck squamous cell carcinoma
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
7. Full Text RANK DISCRIMINANTS FOR PREDICTING PHENOTYPES FROM RNA EXPRESSION
by Bahman Afsari and Ulisses M. Braga-Neto and Donald Geman
The Annals of Applied Statistics, ISSN 1932-6157, 9/2014, Volume 8, Issue 3, pp. 1469 - 1491
Statistical methods for analyzing large-scale biomolecular data are commonplace in computational biology. A notable example is phenotype prediction from gene... 
Datasets | Discriminants | Phenotypes | Genes | Leukemia | Gene expression | Bioinformatics | Prostate | Tumors | Cancer | Rank discriminant | Cancer classification | Order statistics | DIAGNOSIS | order statistics | PATTERNS | STATISTICS & PROBABILITY | 2-GENE CLASSIFIER | rank discriminant | MOLECULAR CLASSIFICATION | PROSTATE-CANCER | GENE-EXPRESSION | TUMOR CLASSIFICATION | SELECTION | CELL | gene expression | MICROARRAY DATA
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
8. Full Text SwitchBox: An R package for k-Top Scoring Pairs classifier development
by Afsari, Bahman and Fertig, Elana J and Geman, Donald and Marchionni, Luigi
Bioinformatics, ISSN 1367-4803, 01/2015, Volume 31, Issue 2, pp. 273 - 274
k-Top Scoring Pairs (kTSP) is a classification method for prediction from high-throughput data based on a set of the paired measurements. Each of the two... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | EXPRESSION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Breast Neoplasms - classification | Computational Biology - methods | Algorithms | Breast Neoplasms - genetics | Humans | Gene Expression Regulation, Neoplastic | Female | Gene Expression Profiling - methods | Neoplasm Recurrence, Local - genetics | Biomarkers, Tumor - genetics | Neoplasm Recurrence, Local - diagnosis | Support Vector Machine | Applications Notes
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
9. Full Text Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy
by Springer, Simeon U and Chen, Chung-Hsin and Del Carmen Rodriguez Pena, Maria and Li, Lu and Douville, Christopher and Wang, Yuxuan and Cohen, Joshua David and Taheri, Diana and Silliman, Natalie and Schaefer, Joy and Ptak, Janine and Dobbyn, Lisa and Papoli, Maria and Kinde, Isaac and Afsari, Bahman and Tregnago, Aline C and Bezerra, Stephania M and Vandenbussche, Christopher and Fujita, Kazutoshi and Ertoy, Dilek and Cunha, Isabela W and Yu, Lijia and Bivalacqua, Trinity J and Grollman, Arthur P and Diaz, Luis A and Karchin, Rachel and Danilova, Ludmila and Huang, Chao-Yuan and Shun, Chia-Tung and Turesky, Robert J and Yun, Byeong Hwa and Rosenquist, Thomas A and Pu, Yeong-Shiau and Hruban, Ralph H and Tomasetti, Cristian and Papadopoulos, Nickolas and Kinzler, Ken W and Vogelstein, Bert and Dickman, Kathleen G and Netto, George J
eLife, ISSN 2050-084X, 03/2018, Volume 7
Current non-invasive approaches for detection of urothelial cancers are suboptimal. We developed a test to detect urothelial neoplasms using DNA recovered from... 
TERT PROMOTER MUTATIONS | UPPER URINARY-TRACT | P53 NUCLEAR OVEREXPRESSION | CIRCULATING TUMOR DNA | TRANSITIONAL-CELL CARCINOMA | BIOLOGY | ARISTOLACTAM-DNA ADDUCTS | ARISTOLOCHIC ACID | SITU HYBRIDIZATION ASSAY | IN-SITU | INVASIVE BLADDER-CANCER | Urine | Urothelial cancer | Copy number | Invasiveness | Genes | Cytology | Aneuploidy | Genomes | FDA approval | Bladder cancer | Urology | Medicine | Pathology | Toxicology | Cellular biology | Mutation | Public health | Deoxyribonucleic acid--DNA | DNA sequencing | Tumors
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
10. Full Text Abstract 5342: Hardwiring mechanism into predicting cancer phenotypes by computational learning
by Afsari, Bahman and Fertig, Elana Judith and Younes, Laurent and Geman, Donald and Marchionni, Luigi
Cancer Research, ISSN 0008-5472, 10/2014, Volume 74, Issue 19 Supplement, pp. 5342 - 5342
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
11. Full Text Correction: Non-invasive detection of urothelial cancer through the analysis of driver gene mutations and aneuploidy
by Springer, Simeon U and Chen, Chung-Hsin and Rodriguez Pena, Maria Del Carmen and Li, Lu and Douville, Christopher and Wang, Yuxuan and Cohen, Joshua David and Taheri, Diana and Silliman, Natalie and Schaefer, Joy and Ptak, Janine and Dobbyn, Lisa and Papoli, Maria and Kinde, Isaac and Afsari, Bahman and Tregnago, Aline C and Bezerra, Stephania M and VandenBussche, Christopher and Fujita, Kazutoshi and Ertoy, Dilek and Cunha, Isabela W and Yu, Lijia and Bivalacqua, Trinity J and Grollman, Arthur P and Diaz, Luis A and Karchin, Rachel and Danilova, Ludmila and Huang, Chao-Yuan and Shun, Chia-Tung and Turesky, Robert J and Yun, Byeong Hwa and Rosenquist, Thomas A and Pu, Yeong-Shiau and Hruban, Ralph H and Tomasetti, Cristian and Papadopoulos, Nickolas and Kinzler, Ken W and Vogelstein, Bert and Dickman, Kathleen G and Netto, George J
eLife, ISSN 2050-084X, 11/2018, Volume 7
Urothelial cancer | Aneuploidy | Genomes | Mutation | Invasiveness | Cancer
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
12. Full Text Differential Variation Analysis Enables Detection of Tumor Heterogeneity Using Single-Cell RNA-Sequencing Data
by Davis-Marcisak, EF and Sherman, TD and Orugunta, P and Stein-O'Brien, GL and Puram, SV and Torres, ETR and Hopkins, AC and Jaffee, EM and Favorov, AV and Afsari, B and Goff, LA and Fertig, EJ
CANCER RESEARCH, ISSN 0008-5472, 10/2019, Volume 79, Issue 19, pp. 5102 - 5112
Tumor heterogeneity provides a complex challenge to cancer treatment and is a critical component of therapeutic response, disease recurrence, and patient... 
VARIABILITY | HEAD | TRANSCRIPTOMIC ANALYSIS | ONCOLOGY | CANCER | GENES
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
13. Full Text A Novel Functional Splice Variant ofAKT3Defined by Analysis of Alternative Splice Expression in HPV-Positive Oropharyngeal Cancers
by Guo, Theresa and Sakai, Akihiro and Afsari, Bahman and Considine, Michael and Danilova, Ludmila and Favorov, Alexander V and Yegnasubramanian, Srinivasan and Kelley, Dylan Z and Flam, Emily and Ha, Patrick K and Khan, Zubair and Wheelan, Sarah J and Gutkind, J. Silvio and Fertig, Elana J and Gaykalova, Daria A and Califano, Joseph
Cancer Research, ISSN 0008-5472, 10/2017, Volume 77, Issue 19, pp. 5248 - 5258
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
14. Full Text Abstract 3577: Splice expression variation analysis (SEVA) for differential gene isoform usage in cancer
by Afsari, Bahman and Guo, Theresa and Considine, Michael and Kelley, Dylan and Flam, Emily and Florea, Liliana and Ha, Patrick and Geman, Donald and Ochs, Michael F and Califano, Joseph A and Gaykalova, Daria A and Favorov, Alexander V and Fertig, Elana J
Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. 3577 - 3577
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
15. Full Text Evaluation of liquid from the Papanicolaou test and other liquid biopsies for the detection of endometrial and ovarian cancers
by Wang, Yuxuan and Li, Lu and Douville, Christopher and Cohen, Joshua D and Yen, Ting-Tai and Kinde, Isaac and Sundfelt, Karin and Kjær, Susanne K and Hruban, Ralph H and Shih, Ie-Ming and Wang, Tian-Li and Kurman, Robert J and Springer, Simeon and Ptak, Janine and Popoli, Maria and Schaefer, Joy and Silliman, Natalie and Dobbyn, Lisa and Tanner, Edward J and Angarita, Ana and Lycke, Maria and Jochumsen, Kirsten and Afsari, Bahman and Danilova, Ludmila and Levine, Douglas A and Jardon, Kris and Zeng, Xing and Arseneau, Jocelyne and Fu, Lili and Diaz, Luis A and Karchin, Rachel and Tomasetti, Cristian and Kinzler, Kenneth W and Vogelstein, Bert and Fader, Amanda N and Gilbert, Lucy and Papadopoulos, Nickolas
Science Translational Medicine, ISSN 1946-6234, 03/2018, Volume 10, Issue 433, p. eaap8793
We report the detection of endometrial and ovarian cancers based on genetic analyses of DNA recovered from the fluids obtained during a routine Papanicolaou... 
MEDICINE, RESEARCH & EXPERIMENTAL | SOMATIC TP53 MUTATIONS | WOMEN | ATYPICAL GLANDULAR CELLS | SCREENING UKCTOCS | CARCINOGENESIS | CLONAL HEMATOPOIESIS | SEROUS CARCINOMA | UK COLLABORATIVE TRIAL | FALLOPIAN-TUBE | RANDOMIZED CONTROLLED-TRIAL | CELL BIOLOGY
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
16. Full Text Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer
by Afsari, Bahman and Guo, Theresa and Considine, Michael and Florea, Liliana and Kagohara, Luciane T and Stein-O'Brien, Genevieve L and Kelley, Dylan and Flam, Emily and Zambo, Kristina D and Ha, Patrick K and Geman, Donald and Ochs, Michael F and Califano, Joseph A and Gaykalova, Daria A and Favorov, Alexander V and Fertig, Elana J
Bioinformatics, ISSN 1367-4803, 06/2018, Volume 34, Issue 11, pp. 1859 - 1867
Abstract Motivation Current bioinformatics methods to detect changes in gene isoform usage in distinct phenotypes compare the relative expected isoform usage... 
TRANSCRIPTOME | RNA-SEQ | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | RECONSTRUCTION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | REVEALS | Sequence Analysis, RNA - methods | Computational Biology - methods | Alternative Splicing | Neoplasms - genetics | Humans | Gene Expression Regulation, Neoplastic | Head and Neck Neoplasms - genetics | Models, Genetic | Software | Protein Isoforms - genetics | Original Papers
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights