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1. Full Text May the Fittest Protein Evolve: Favoring the Plant‐Specific Origin and Expansion of NAC Transcription Factors
by Mathew, Iny Elizebeth and Agarwal, Pinky
BioEssays, ISSN 0265-9247, 08/2018, Volume 40, Issue 8, pp. e1800018 - n/a
Plant‐specific NAC transcription factors (TFs) evolve during the transition from aquatic to terrestrial plant life and are amplified to become one of the... 
NAC | stress | development | evolution | transcription factors | plant‐specific | plant-specific | VASCULAR-RELATED NAC-DOMAIN7 | SHAPED-COTYLEDON GENES | ARABIDOPSIS-THALIANA | BIOCHEMISTRY & MOLECULAR BIOLOGY | LATERAL ROOT DEVELOPMENT | ABIOTIC STRESS RESPONSES | CELL-DEATH | LEAF SENESCENCE | GOSSYPIUM-HIRSUTUM | SECONDARY WALL SYNTHESIS | BIOLOGY | GENOME-WIDE ANALYSIS | Plant Cells - metabolism | Plant Development | Gene Expression Regulation | Transcription Factors - genetics | Meristem - growth & development | Transcription Factors - metabolism | Plants - genetics | Cell Wall - metabolism | Protein Domains | Plant Proteins - metabolism | Protein Processing, Post-Translational | RNA, Messenger | Evolution, Molecular | Transcription factors | Terrestrial environments | Aquatic plants | Acetylcysteine | Crop improvement | Proteins | Resistance | Properties (attributes) | Repressors | Cascades | Conductance | Dimerization | Deoxyribonucleic acid--DNA
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2. Full Text Transcription factor OsNF-YB9 regulates reproductive growth and development in rice
by Das, Sweta and Parida, Swarup K and Agarwal, Pinky and Tyagi, Akhilesh Kumar
Planta, ISSN 0032-0935, 12/2019, Volume 250, Issue 6, pp. 1849 - 1865
OsNF-YB9 controls heading by affecting expression of regulators of flowering. It affects the development of the reproductive meristem by interacting with MADS1... 
Life Sciences | NF-Y | Heading date | Forestry | Agriculture | Ecology | Plant Sciences | Meristem | Reproductive development | Floral development | Rice | Plants (botany) | Regulators | Transcription factors | Genes | Homology | Reproductive organs | Gene expression | Metabolism | Meristems | Signal transduction | Eukaryotes | Cell cycle | Flowering | Gibberellic acid | Crop yield
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3. Full Text F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress
by Mukesh Jain and Aashima Nijhawan and Rita Arora and Pinky Agarwal and Swatismita Ray and Pooja Sharma and Sanjay Kapoor and Akhilesh K. Tyagi and Jitendra P. Khurana
Plant Physiology, ISSN 0032-0889, 4/2007, Volume 143, Issue 4, pp. 1467 - 1483
F-box proteins constitute a large family in eukaryotes and are characterized by a conserved F-box motif (approximately 40 amino acids). As components of the... 
Proteins | Developmental biology | Genome Analysis | Genes | Panicles | Genomes | Gene expression regulation | Plants | F box proteins | Rice | Plant cells | SIGNAL-TRANSDUCTION | SELF-INCOMPATIBILITY | ARABIDOPSIS-THALIANA | FLORAL-MERISTEM | SCF E3 COMPLEX | PLANT DEVELOPMENT | UBIQUITIN-LIGASE | EVOLUTIONARY EXPANSION | TRANSCRIPTION FACTOR | AUXIN RECEPTOR | PLANT SCIENCES | Gene Expression Regulation, Plant - radiation effects | Chromosome Mapping | Genome, Plant | Phylogeny | F-Box Proteins - physiology | F-Box Proteins - classification | Oryza - genetics | Seeds - growth & development | Gene Expression Regulation, Plant - physiology | Light | Polymerase Chain Reaction | F-Box Proteins - genetics | Oryza - embryology | Plant proteins | Development | Genetic aspects | Research | Gene expression
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4. Full Text Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress
by Chauhan, Harsh and Khurana, Neetika and Agarwal, Pinky and Khurana, Paramjit
Molecular Genetics and Genomics, ISSN 1617-4615, 8/2011, Volume 286, Issue 2, pp. 171 - 187
Plants respond to heat stress by enhancing the expression of genes encoding heat shock protein (HSPs) genes through activation of heat shock factors (HSFs)... 
Life Sciences | Biochemistry, general | Abiotic stress | Microbial Genetics and Genomics | Heat shock factor | Plant Genetics & Genomics | Cell Biology | Animal Genetics and Genomics | Rice | Transcription profiling | DNA-BINDING | ARABIDOPSIS-THALIANA | BIOCHEMISTRY & MOLECULAR BIOLOGY | INDUCIBLE TRANSCRIPTION FACTOR | SEED DEVELOPMENT | SIGNAL-TRANSDUCTION | GENETICS & HEREDITY | GENE-EXPRESSION | FUNCTIONAL-ANALYSIS | FACTOR HSFA3 | MOLECULAR-CLONING | FACTOR DREB2A | Heat-Shock Response - drug effects | Genome-Wide Association Study | Calcium - pharmacology | Cold-Shock Response - drug effects | Seeds - metabolism | Oryza - metabolism | Seeds - drug effects | Seeds - genetics | Gene Expression Regulation, Plant - genetics | Heat-Shock Proteins - biosynthesis | Gene Expression Profiling | Oryza - drug effects | Promoter Regions, Genetic - drug effects | Cold-Shock Response - genetics | Heat-Shock Response - genetics | Heat-Shock Proteins - genetics | Plant Proteins - genetics | Gene Expression Regulation, Plant - drug effects | Oryza - growth & development | Oryza - genetics | Droughts | Chromosomes, Plant - genetics | Plant Growth Regulators - pharmacology | Proteins | Anopheles | Analysis | Genomics | Plant genetics | Heat shock proteins | Genetic research | Universities and colleges | Gene expression
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5. Full Text Transcription factors regulating the progression of monocot and dicot seed development
by Agarwal, Pinky and Kapoor, Sanjay and Tyagi, Akhilesh K
BioEssays, ISSN 0265-9247, 03/2011, Volume 33, Issue 3, pp. 189 - 202
Seed development in this paper has been classified into the three landmark stages of cell division, organ initiation and maturation, based on morphological... 
seed development | dicot | transcription factor | embryogenesis | monocot | Embryogenesis | Dicot | Transcription factor | Seed development | Monocot | CONTROLS COTYLEDON DEVELOPMENT | ARABIDOPSIS-THALIANA | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLANT DEVELOPMENT | EARLY EMBRYOGENESIS | PATTERN-FORMATION | EMBRYO DEVELOPMENT | SHOOT MERISTEM | BIOLOGY | STORAGE PROTEIN | ABSCISIC-ACID | HOMEOBOX GENE | Arabidopsis - genetics | Cell Division - genetics | Plant Proteins - genetics | Oryza - genetics | Seeds - growth & development | Seeds - genetics | Gene Expression Regulation, Plant | Arabidopsis - embryology | Transcription Factors - genetics | Oryza - embryology | Cell division | Transcription factors | Germination
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6. Full Text MADS-box gene family in rice: Genome-wide identification, organization and expression profiling during reproductive development and stress
by Arora, Rita and Agarwal, Pinky and Ray, Swatismita and Singh, Ashok Kumar and Singh, Vijay Pal and Tyagi, Akhilesh K and Kapoor, Sanjay
BMC Genomics, ISSN 1471-2164, 07/2007, Volume 8, Issue 1, pp. 242 - 242
Background: MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth... 
DOMAIN PROTEINS | EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | CONTROLLING FLOWER DEVELOPMENT | PLANT DEVELOPMENT | CDNA-CLONES | ARABIDOPSIS | DIVERGENCE | ANTIRRHINUM-MAJUS | TRANSCRIPTION FACTOR | FLORAL ORGAN IDENTITY | Gene Duplication | Multigene Family - genetics | Oligonucleotide Array Sequence Analysis | MADS Domain Proteins - genetics | Reproduction - genetics | Chromosome Mapping | Gene Expression Profiling | Genome, Plant | Phylogeny | Chromosomes, Plant | Arabidopsis - genetics | Oryza - growth & development | Oryza - genetics | Adaptation, Physiological - genetics | Gene Expression Regulation, Developmental | Gene Expression Regulation, Plant | Conserved Sequence | Cluster Analysis | Evolution, Molecular | Polymerase chain reaction | Usage | Genes | DNA binding proteins | Research | Identification and classification | Methods
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7. Full Text Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica)
by Ray, Swatismita and Agarwal, Pinky and Arora, Rita and Kapoor, Sanjay and Tyagi, Akhilesh K
Molecular Genetics and Genomics, ISSN 1617-4615, 11/2007, Volume 278, Issue 5, pp. 493 - 505
Calcium-dependent protein kinases (CDPKs) are important sensors of Ca+2 flux in plants, which control plant development and responses by regulating downstream... 
Life Sciences | Biochemistry, general | Oryza sativa ssp. indica var. IR64 | Calcium-dependent protein kinase | Expression profile | Microbial Genetics and Genomics | Microarray | Cell Biology | TRANSGENIC TOBACCO | NICOTIANA-TABACUM | BIOCHEMISTRY & MOLECULAR BIOLOGY | Oryza sativa ssp indica var. IR64 | SEED DEVELOPMENT | calcium-dependent protein kinase | CALMODULIN-LIKE DOMAIN | LOW-TEMPERATURE | COMPREHENSIVE ANALYSIS | SIGNAL-TRANSDUCTION | microarray | PROMOTER ELEMENTS | GENETICS & HEREDITY | CUCUMBER CUCUMIS-SATIVUS | MOLECULAR-CLONING | expression profile | Seeds | Oligonucleotide Array Sequence Analysis | Species Specificity | Genes, Plant | Gene Expression Profiling | Genome, Plant | Phylogeny | Chromosomes, Plant | Oryza - enzymology | Gene Expression Regulation, Enzymologic | Oryza - genetics | Models, Biological | Gene Expression Regulation, Plant | Protein Kinases - biosynthesis | Genetic research | Protein kinases | Kinases | Abiotic stress | Genes | Genomics
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8. Full Text Mediator subunit OsMED14_1 plays an important role in rice development
by Malik, Naveen and Ranjan, Rajeev and Parida, Swarup K and Agarwal, Pinky and Tyagi, Akhilesh K
The Plant Journal, ISSN 0960-7412, 11/2019
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9. Full Text Three rice NAC transcription factors heteromerize and are associated with seed size
by Mathew, Iny Elizebeth and Das, Sweta and Mahto, Arunima and Agarwal, Pinky
Frontiers in Plant Science, ISSN 1664-462X, 11/2016, Volume 7, Issue 2016
NAGs are plant-specific transcription factors (TFs) involved in multiple aspects of development and stress. In rice, three NAC TF encoding genes, namely... 
Association analysis | NAC | Seed development | Transcriptional properties | Rice | ARABIDOPSIS-THALIANA | GRAIN-SIZE | rice | transcriptional properties | PLANT SCIENCES | STRESS-RESPONSIVE GENES | LEAF SENESCENCE | ORYZA-SATIVA | association analysis | MITOCHONDRIAL RETROGRADE REGULATION | seed development | GENOME-WIDE ANALYSIS | ENDOPLASMIC-RETICULUM | ENDOSPERM DEVELOPMENT | ABSCISIC-ACID | Transcription factors | Seeds | Physiological aspects | Development | Genetic aspects | Research | Plants | Gene expression | NAc
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10. Full Text Genome-wide gene-environment study identifies glutamate receptor gene grin2a as a parkinson's disease modifier gene via interaction with coffee
by Hamza, Taye H and Chen, Honglei and Hill-Burns, Erin M and Rhodes, Shannon L and Montimurro, Jennifer and Kay, Denise M and Tenesa, Albert and Kusel, Victoria I and Sheehan, Patricia and Eaaswarkhanth, Muthukrishnan and Yearout, Dora and Samii, Ali and Roberts, John W and Agarwal, Pinky and Bordelon, Yvette and Park, Yikyung and Wang, Liyong and Gao, Jianjun and Vance, Jeffery M and Kendler, Kenneth S and Bacanu, Silviu-Alin and Scott, William K and Ritz, Beate and Nutt, John and Factor, Stewart A and Zabetian, Cyrus P and Payami, Haydeh
PLoS Genetics, ISSN 1553-7390, 08/2011, Volume 7, Issue 8, p. e1002237
Our aim was to identify genes that influence the inverse association of coffee with the risk of developing Parkinson's disease (PD). We used genome-wide... 
RISK-FACTORS | METAANALYSIS | VARIANTS | FAMILIES | GENETICS & HEREDITY | CAFFEINE | SMOKING | MODEL | ISTRADEFYLLINE | ASSOCIATION | ONSET | Genetic Predisposition to Disease | Genome-Wide Association Study | Humans | Risk Factors | Genotype | Male | Parkinson Disease - genetics | Coffee | Gene-Environment Interaction | Case-Control Studies | Receptors, N-Methyl-D-Aspartate - genetics | Female | Polymorphism, Single Nucleotide | Genome, Human | Parkinson's disease | Genes | Physiological aspects | Development and progression | Genetic aspects | Research | Health aspects | Risk factors | Studies | Genetics | Parkinsons disease
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