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1. Full Text Unusual flavoenzyme catalysis in marine bacteria
by Teufel, Robin and Agarwal, Vinayak and Moore, Bradley S
Current Opinion in Chemical Biology, ISSN 1367-5931, 04/2016, Volume 31, pp. 31 - 39
Ever since the discovery of the flavin cofactor more than 80 years ago, flavin-dependent enzymes have emerged as ubiquitous and versatile redox catalysts in... 
Marine Biology | Bacteria - enzymology | Catalysis | Oxidation-Reduction | Enzymes - metabolism | Flavins - metabolism | Bacteria | Biological products | Physiological aspects | Enzymes
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2. Full Text Biosynthesis of polybrominated aromatic organic compounds by marine bacteria
by Agarwal, Vinayak and El Gamal, Abrahim A and Yamanaka, Kazuya and Poth, Dennis and Kersten, Roland D and Schorn, Michelle and Allen, Eric E and Moore, Bradley S
Nature Chemical Biology, ISSN 1552-4450, 2014, Volume 10, Issue 8, pp. 640 - 647
Polybrominated diphenyl ethers (PBDEs) and polybrominated bipyrroles are natural products that bioaccumulate in the marine food chain. PBDEs have attracted... 
ANTIBIOTIC PENTABROMOPSEUDILIN | CANDIDA-PARAPSILOSIS CBS604 | IN-VITRO | DEPENDENT MONOOXYGENASE | NATURAL-PRODUCTS | BIOCHEMISTRY & MOLECULAR BIOLOGY | SP-NOV | DIPHENYL ETHERS | IDENTIFICATION | 4-HYDROXYBENZOATE | MASS-SPECTROMETRY | Halogenated Diphenyl Ethers - metabolism | Pyrroles - metabolism | Genome, Bacterial | Multigene Family | Pseudoalteromonas - metabolism | Oxidoreductases - metabolism | Oxidoreductases - genetics | Halogenation | Molecular Sequence Data | Pseudoalteromonas - genetics | Aquatic Organisms | Enzymes | Bacteria | Marine biology | Biosynthesis | Index Medicus
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3. Full Text Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
by Wang, Mingxun and Carver, Jeremy J and Phelan, Vanessa V and Sanchez, Laura M and Garg, Neha and Peng, Yao and Nguyen, Don Duy and Watrous, Jeramie and Kapono, Clifford A and Luzzatto-Knaan, Tal and Porto, Carla and Bouslimani, Amina and Melnik, Alexey V and Meehan, Michael J and Liu, Wei-Ting and Crüsemann, Max and Boudreau, Paul D and Esquenazi, Eduardo and Sandoval-Calderón, Mario and Kersten, Roland D and Pace, Laura A and Quinn, Robert A and Duncan, Katherine R and Hsu, Cheng-Chih and Floros, Dimitrios J and Gavilan, Ronnie G and Kleigrewe, Karin and Northen, Trent and Dutton, Rachel J and Parrot, Delphine and Carlson, Erin E and Aigle, Bertrand and Michelsen, Charlotte F and Jelsbak, Lars and Sohlenkamp, Christian and Pevzner, Pavel and Edlund, Anna and McLean, Jeffrey and Piel, Jörn and Murphy, Brian T and Gerwick, Lena and Liaw, Chih-Chuang and Yang, Yu-Liang and Humpf, Hans-Ulrich and Maansson, Maria and Keyzers, Robert A and Sims, Amy C and Johnson, Andrew R and Sidebottom, Ashley M and Sedio, Brian E and Klitgaard, Andreas and Larson, Charles B and Boya, Cristopher A.P and Torres-Mendoza, Daniel and Gonzalez, David J and Silva, Denise B and Marques, Lucas M and Demarque, Daniel P and Pociute, Egle and O'Neill, Ellis C and Briand, Enora and Helfrich, Eric J. N and Granatosky, Eve A and Glukhov, Evgenia and Ryffel, Florian and Houson, Hailey and Mohimani, Hosein and Kharbush, Jenan J and Zeng, Yi and Vorholt, Julia A and Kurita, Kenji L and Charusanti, Pep and McPhail, Kerry L and Nielsen, Kristian Fog and Vuong, Lisa and Elfeki, Maryam and Traxler, Matthew F and Engene, Niclas and Koyama, Nobuhiro and Vining, Oliver B and Baric, Ralph and Silva, Ricardo R and Mascuch, Samantha J and Tomasi, Sophie and Jenkins, Stefan and Macherla, Venkat and Hoffman, Thomas and Agarwal, Vinayak and Williams, Philip G and Dai, Jingqui and Neupane, Ram and Gurr, Joshua and Rodríguez, Andrés M. C and Lamsa, Anne and Zhang, Chen and Dorrestein, Kathleen and Duggan, Brendan M and Almaliti, Jehad and Allard, Pierre-Marie and Phapale, Prasad and ...
Nature Biotechnology, ISSN 1087-0156, 09/2016, Volume 34, Issue 8, pp. 828 - 837
The potential of the diverse chemistries present in natural products (NP) for biotechnology and medicine remains untapped because NP databases are not... 
METABOLOMICS | GENE-CLUSTER | DEREPLICATION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | REPOSITORY | IDENTIFICATION | EXTRACTS | GENOME | DISCOVERY | RESOURCE | Mass Spectrometry - statistics & numerical data | Biological Products - chemistry | Biological Products - classification | Information Storage and Retrieval - methods | Databases, Chemical | Internationality | Database Management Systems | Information Dissemination - methods | Data Curation - methods | Electronic data processing | Natural products | Chemical research | Molecular dynamics | Research | Chemical properties | Mass spectrometry | Methods | Biotechnology | Life Sciences | Ecology, environment
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4. Full Text Mutations that stabilize the open state of the Erwinia chrisanthemi ligand-gated ion channel fail to change the conformation of the pore domain in crystals
by Giovanni Gonzalez-Gutierrez and Tiit Lukk and Vinayak Agarwal and David Papke and Satish K. Nair and Claudio Grosman
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 4/2012, Volume 109, Issue 16, pp. 6331 - 6336
The determination of structural models of the various stable states of an ion channel is a key step. toward the characterization of its conformational... 
Receptors | Crystals | Agonists | Inurement | Ligands | Ion channels | Kinetics | Cholinergic receptors | Crystal structure | Electrophysiology | Structure-function | CHOLINERGIC-RECEPTOR | M2 DOMAIN | FULL-LENGTH KCSA | DESENSITIZATION | MULTIDISCIPLINARY SCIENCES | X-RAY-STRUCTURE | structure-function | STRUCTURAL MODELS | MEMBRANE-PROTEIN | electrophysiology | KINETICS | NICOTINIC ACETYLCHOLINE-RECEPTOR | LEUCINE | Cysteamine - pharmacology | Pectobacterium chrysanthemi - genetics | Pectobacterium chrysanthemi - physiology | Humans | Protein Conformation - drug effects | Bacterial Proteins - chemistry | Crystallography, X-Ray | Ion Channel Gating - physiology | Ligand-Gated Ion Channels - physiology | Time Factors | HEK293 Cells | Female | Membrane Potentials - drug effects | Ligand-Gated Ion Channels - chemistry | Oocytes - metabolism | Xenopus laevis | Bacterial Proteins - genetics | Models, Molecular | Bacterial Proteins - physiology | Animals | Ion Channel Gating - genetics | Oocytes - physiology | Ligand-Gated Ion Channels - genetics | Protein Structure, Secondary - drug effects | Mice | Mutation | Ligands (Biochemistry) | Physiological aspects | Bacillus (Bacteria) | Research | Health aspects | Mutation (Biology) | Biological Sciences
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5. Full Text Chemical Ecology of Marine Sponges: New Opportunities through “-Omics”
by Paul, Valerie J and Freeman, Christopher J and Agarwal, Vinayak
Integrative and Comparative Biology, ISSN 1540-7063, 04/2019
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6. Full Text Structure of the enzyme-acyl carrier protein (ACP) substrate gatekeeper complex required for biotin synthesis
by Vinayak Agarwal and Steven Lin and Tiit Lukk and Satish K. Nair and John E. Cronan and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 10/2012, Volume 109, Issue 43, pp. 17406 - 17411
Although the pimeloyl moiety was long known to be a biotin precursor, the mechanism of assembly of this C7 α,ω-dicarboxylic acid was only recently elucidated.... 
Enzymes | Active sites | Carrier proteins | Escherichia coli | Atoms | Esters | Fatty acids | Carbon | Enzyme substrates | Crystal structure | Esterase | Protein-protein interaction | Cofactor biosynthesis | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | THIOESTERS | SYNTHASE | GENE | CARBOXYLESTERASE | PATHWAY | BIOSYNTHESIS | BIOLOGY | cofactor biosynthesis | esterase | protein-protein interaction | EXPRESSION | BIOH | Acyl Carrier Protein - chemistry | Biocatalysis | Biotin - biosynthesis | Acyl Carrier Protein - metabolism | Models, Molecular | Substrate Specificity | Protein Conformation | Proteins | Physiological aspects | Biosynthesis | Research | Health aspects | Protein-protein interactions | protein–protein interaction | Biological Sciences
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7. Full Text Chemical ecology of marine sponges: new opportunities through "-omics"
by Paul, Valerie J and Freeman, Christopher J and Agarwal, Vinayak
Integrative and comparative biology, 04/2019
The chemical ecology and chemical defenses of sponges have been investigated for decades; consequently, sponges are among the best understood marine organisms... 
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8. Full Text Characteristics of Neovascularization in Early Stages of Proliferative Diabetic Retinopathy by Optical Coherence Tomography Angiography
by Chowdhary, Neha and Shrivastav, Ankita and Koundanya, Vikram Vinayak and Mayor, Rahul and Singh, Shalini and Agarwal, Manisha
American Journal of Ophthalmology, ISSN 0002-9394, 01/2019, Volume 197, pp. 180 - 180
OPHTHALMOLOGY | Diabetic retinopathy | Medical imaging | Diabetes | Health risk assessment
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9. Full Text Fungal polyketide engineering comes of age
by Vinayak Agarwal and Bradley S. Moore
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 8/2014, Volume 111, Issue 34, pp. 12278 - 12279
Bioengineering | Enzymes | Molecules | COMMENTARIES | Polyketides | Biosynthesis | Biochemistry | Chemicals | Lactones | Assembly lines | COMBINATORIAL BIOSYNTHESIS | SYNTHASE GENES | RADICICOL | NATURAL-PRODUCTS | MULTIDISCIPLINARY SCIENCES | INSIGHTS | Combinatorial Chemistry Techniques - methods | Polyketide Synthases - chemistry | Polyketide Synthases - metabolism | Animals | Humans | Saccharomyces cerevisiae Proteins - metabolism | Polyketides - metabolism | Saccharomyces cerevisiae Proteins - chemistry | Biological Sciences | Commentaries
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10. Full Text Long-term Progression of Type 1 Neovascularization in Age-related Macular Degeneration Using Optical Coherence Tomography Angiography
by Shrivastav, Ankita and Singh, Shalini and Koundanya, Vikram Vinayak and Mayor, Rahul and Agarwal, Manisha
American Journal of Ophthalmology, ISSN 0002-9394, 06/2018, Volume 190, pp. 197 - 197
OPHTHALMOLOGY | Tomography, Optical Coherence | Humans | Neovascularization, Pathologic | Fluorescein Angiography | Macular Degeneration | Macular degeneration | Tomography | Medical imaging
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11. Full Text Secondary dengue retinitis with associated occlusive retinal vasculitis
by Koundanya, Vikram Vinayak and Chowdhary, Neha and Agarwal, Manisha and Katre, Prashant
Journal of Ophthalmic Inflammation and Infection, ISSN 1869-5760, 12/2019, Volume 9, Issue 1, pp. 7 - 5
Dengue is endemic in tropical countries. Secondary dengue infections are generally more dangerous as they lead to an exaggerated response in the patient due to... 
Secondary dengue retinitis | Occlusive vasculitis | Post-fever retinitis | Edema | Enzymes | Immunology | Medical imaging | West Nile virus | Dengue fever | Tomography | Viruses | Optics | Infections | Inflammation | Tropical diseases
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12. Full Text Diversity and distribution of the bmp gene cluster and its Polybrominated products in the genus Pseudoalteromonas
by Busch, Julia and Agarwal, Vinayak and Schorn, Michelle and Machado, Henrique and Moore, Bradley S and Rouse, Greg W and Gram, Lone and Jensen, Paul R
Environmental Microbiology, ISSN 1462-2912, 05/2019, Volume 21, Issue 5, pp. 1575 - 1585
The production of pentabromopseudilin and related brominated compounds by Pseudoalteromonas spp. has recently been linked to the bmp biosynthetic gene cluster.... 
DIPHENYL ETHERS PBDES | THYROID-HORMONE | BIOSYNTHESIS | ORGANIC-COMPOUNDS | BACTERIUM | MICROBIOLOGY | MULTIPLE SEQUENCE ALIGNMENT | MARINE | VITAMIN-A | TOOL | Genetic research | Bone morphogenetic proteins | Phylogeny | Genes | Bromination | Heredity | Genomes | Biodiversity | Environments | Species diversity | Strains | Distribution | Clusters | Bacteria | Chromosomes | Species | Strains (organisms)
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13. Full Text Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges
by Agarwal, Vinayak and Blanton, Jessica M and Podell, Sheila and Taton, Arnaud and Schorn, Michelle A and Busch, Julia and Lin, Zhenjian and Schmidt, Eric W and Jensen, Paul R and Paul, Valerie J and Biggs, Jason S and Golden, James W and Allen, Eric E and Moore, Bradley S and Univ. of California, San Diego, CA (United States)
Nature Chemical Biology, ISSN 1552-4450, 05/2017, Volume 13, Issue 5, pp. 537 - 543
Naturally produced polybrominated diphenyl ethers (PBDEs) pervade the marine environment and structurally resemble toxic man-made brominated flame retardants.... 
SECONDARY METABOLITES | SYMBIONT | NATURAL-PRODUCTS | LAMELLODYSIDEA | BIOCHEMISTRY & MOLECULAR BIOLOGY | ORGANIC-COMPOUNDS | CYANOBACTERIUM OSCILLATORIA-SPONGELIAE | 4 DICTYOCERATID SPONGES | DYSIDEA-HERBACEA | DIBENZO-P-DIOXINS | LISSOCLINUM-PATELLA | Halogenated Diphenyl Ethers - metabolism | Metagenomics | Biological Products - chemistry | Bone Morphogenetic Proteins - metabolism | Animals | Porifera - metabolism | Biological Products - metabolism | Molecular Structure | Halogenated Diphenyl Ethers - chemistry | Bone Morphogenetic Proteins - genetics | Marine biology | Polybrominated diphenyl ethers | Biosynthesis | Genomics | Index Medicus | BASIC BIOLOGICAL SCIENCES | sponge | metagenome | microbiome | PBDE | natural product | cyanobacteria
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14. Full Text Biosynthesis of coral settlement cue tetrabromopyrrole in marine bacteria by a uniquely adapted brominase– thioesterase enzyme pair
by Abrahim El Gamal and Vinayak Agarwal and Stefan Diethelm and Imran Rahman and Michelle A. Schorn and Jennifer M. Sneed and Gordon V. Louie and Kristen E. Whalen and Tracy J. Mincer and Joseph P. Noel and Valerie J. Paul and Bradley S. Moore
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 4/2016, Volume 113, Issue 14, pp. 3797 - 3802
Halogenated pyrroles (halopyrroles) are common chemical moieties found in bioactive bacterial natural products. The halopyrrole moieties of mono- and... 
Biosynthesis | Enzymology | Natural products | Halogenation | ORGANISMS | natural products | HALOGENASE PLTA | STREPTOMYCES | MECHANISM | MULTIDISCIPLINARY SCIENCES | biosynthesis | TRYPTOPHAN 7-HALOGENASE PRNA | halogenation | CARRIER PROTEIN | enzymology | CHLORINATION | Amino Acid Sequence | Pseudoalteromonas - metabolism | Crystallography, X-Ray | Anthozoa - metabolism | Binding Sites - genetics | Animals | Halogenation - physiology | Pseudoalteromonas - genetics | Pyrroles - chemistry | Bacterial Proteins - metabolism | Aquatic Organisms - metabolism | Bromine - chemistry | Flavins - metabolism | Pseudoalteromonas - enzymology | Biological Sciences
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15. Full Text The pimeloyl-CoA synthetase BioW defines a new fold for adenylate-forming enzymes
by Estrada, Paola and Manandhar, Miglena and Dong, Shi-Hui and Deveryshetty, Jaigeeth and Agarwal, Vinayak and Cronan, John E and Nair, Satish K and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Nature Chemical Biology, ISSN 1552-4450, 06/2017, Volume 13, Issue 6, pp. 668 - 674
Reactions that activate carboxylates through acyl-adenylate intermediates are found throughout biology and include acyl-and aryl-CoA synthetases and tRNA... 
7,8-DIAMINOPELARGONIC ACID | BIOTIN BIOSYNTHESIS | BACILLUS-SUBTILIS | PATHWAY | CRYSTAL-STRUCTURE | AMINO-ACIDS | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI K-12 | CELL-FREE-EXTRACTS | ACYL-ADENYLATES | TRANSFER-RNA-SYNTHETASE | Catalytic Domain | Coenzyme A Ligases - chemistry | Adenosine Monophosphate - metabolism | Adenosine Monophosphate - chemistry | Crystallization | Models, Molecular | Substrate Specificity | Ligands | Molecular Structure | Coenzyme A Ligases - metabolism | Enzymes | Residues | tRNA | Chemical reactions | Biotin | Carbon | Substrates | Intermediates | Thioesterification | Aromatic compounds | Proofreading | Protein folding | Mutation | Adenylation | Carboxylates | Binding sites | BASIC BIOLOGICAL SCIENCES
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