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1. GATA4 Represses Formation of Glioblastoma Multiforme
by Agnihotri, Sameer
06/2012
The GATA transcription factors consist of six family members that bind the consensus DNA binding element W-GATA-R, and are poorly characterized in the central... 
0369 | 0379 | Glioblastoma Multiforme | 0760 | GATA4 | 0307
Dissertation
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2. Full Text Genomic analysis of diffuse intrinsic pontine gliomas identifies three molecular subgroups and recurrent activating ACVR1 mutations
by Buczkowicz, Pawel and Hoeman, Christine and Rakopoulos, Patricia and Pajovic, Sanja and Letourneau, Louis and Dzamba, Misko and Morrison, Andrew and Lewis, Peter and Bouffet, Eric and Bartels, Ute and Zuccaro, Jennifer and Agnihotri, Sameer and Ryall, Scott and Barszczyk, Mark and Chornenkyy, Yevgen and Bourgey, Mathieu and Bourque, Guillaume and Montpetit, Alexandre and Cordero, Francisco and Castelo-Branco, Pedro and Mangerel, Joshua and Tabori, Uri and Ho, King Ching and Huang, Annie and Taylor, Kathryn R and Mackay, Alan and Bendel, Anne E and Nazarian, Javad and Fangusaro, Jason R and Karajannis, Matthias A and Zagzag, David and Foreman, Nicholas K and Donson, Andrew and Hegert, Julia V and Smith, Amy and Chan, Jennifer and Lafay-Cousin, Lucy and Dunn, Sandra and Hukin, Juliette and Dunham, Chris and Scheinemann, Katrin and Michaud, Jean and Zelcer, Shayna and Ramsay, David and Cain, Jason and Brennan, Cameron and Souweidane, Mark M and Jones, Chris and Allis, C David and Brudno, Michael and Becher, Oren and Hawkins, Cynthia
Nature Genetics, ISSN 1061-4036, 2014, Volume 46, Issue 5, pp. 451 - 456
Diffuse intrinsic pontine glioma (DIPG) is a fatal brain cancer that arises in the brainstem of children, with no effective treatment and near 100% fatality.... 
BONE MORPHOGENETIC PROTEIN | GENES | GENETICS & HEREDITY | CELL-PROLIFERATION | ID2 EXPRESSION | HISTONE H3.3 | DIFFERENTIATION | BRAIN-STEM GLIOMAS | CANCER | FIBRODYSPLASIA OSSIFICANS PROGRESSIVA | FEATURES | Phosphorylation | Glioma - classification | Humans | Zebrafish | Brain Stem Neoplasms - classification | Gene Expression Profiling | Inhibitor of Differentiation Protein 1 - metabolism | Activin Receptors, Type I - genetics | Inhibitor of Differentiation Protein 2 - metabolism | Sequence Analysis, DNA | Genome, Human - genetics | DNA Copy Number Variations | Glioma - genetics | DNA Methylation | Animals | Brain Stem Neoplasms - genetics | Child | Smad Proteins - metabolism | Gene Expression Regulation, Neoplastic - genetics | Gene mutations | Gliomas | Genomics | Genetic research | Activins | Genetic aspects | Research | Identification and classification | Health aspects | Medical research | Pediatrics | Biomedical research | Brain cancer | Genomes | Histology | Kinases | Gene expression | Cancer therapies | Gene amplification | Brain research | Epigenetics | Tumorigenesis | Mutation | Tumors | Cancer | Index Medicus | ACVR1 | PDGFRA | MYCN | ID2 | H3F3A | ALT | DIPG | K27M-H3.3
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3. Full Text Erratum: Targeting Metabolic Remodeling in Glioblastoma Multiforme
by Wolf, Amparo and Agnihotri, Sameer and Guha, Abhijit
Oncotarget, ISSN 1949-2553, 10/2018, Volume 9, Issue 78, pp. 34855 - 34855
[This corrects the article DOI: 10.18632/oncotarget.190.]. 
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4. Full Text Hexokinase 2 is a key mediator of aerobic glycolysis and promotes tumor growth in human glioblastoma multiforme
by Wolf, Amparo and Agnihotri, Sameer and Micallef, Johann and Mukherjee, Joydeep and Sabha, Nesrin and Cairns, Rob and Hawkins, Cynthia and Guha, Abhijit
Journal of Experimental Medicine, ISSN 0022-1007, 02/2011, Volume 208, Issue 2, pp. 313 - 326
Proliferating embryonic and cancer cells preferentially use aerobic glycolysis to support growth, a metabolic alteration commonly referred to as the "Warburg... 
CANCER-CELLS | MEDICINE, RESEARCH & EXPERIMENTAL | GLUCOSE CATABOLISM | MITOCHONDRIAL HEXOKINASE | PYRUVATE-KINASE | METABOLISM | IDH1 | INTEGRATED GENOMIC ANALYSIS | II HEXOKINASE | IMMUNOLOGY | EXPRESSION | BRAIN-TUMORS | Immunohistochemistry | Phosphorylation | Cell Proliferation | Humans | DNA Primers - genetics | Vascular Endothelial Growth Factor A - metabolism | Reverse Transcriptase Polymerase Chain Reaction | Blotting, Western | Glycolysis - physiology | Flow Cytometry | Hypoxia-Inducible Factor 1, alpha Subunit - metabolism | Dacarbazine - analogs & derivatives | Fluorescent Antibody Technique | Cell Line, Tumor | Glioblastoma - metabolism | Neovascularization, Pathologic - metabolism | Hexokinase - metabolism | Glioblastoma - physiopathology | Index Medicus
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5. Full Text Alkylpurine - DNA - N-glycosylase confers resistance to temozolomide in xenograft models of glioblastoma multiforme and is associated with poor survival in patients
by Agnihotri, Sameer and Gajadhar, Aaron S and Ternamian, Christian and Gorlia, Thierry and Diefes, Kristin L and Mischel, Paul S and Kelly, Joanna and McGown, Gail and Thorncroft, Mary and Carlson, Brett L and Sarkaria, Jann N and Margison, Geoffrey P and Aldape, Kenneth and Hawkins, Cynthia and Hegi, Monika and Guha, Abhijit
Journal of Clinical Investigation, ISSN 0021-9738, 01/2012, Volume 122, Issue 1, pp. 253 - 266
Glioblastoma multiforme (GBM) is the most common and lethal of all gliomas. The current standard of care includes surgery followed by concomitant radiation and... 
MEDICINE, RESEARCH & EXPERIMENTAL | BASE-EXCISION-REPAIR | MOUSE CELLS | IN-VIVO | CONCOMITANT | 3-METHYLADENINE | MGMT PROMOTER METHYLATION | CENTRAL-NERVOUS-SYSTEM | RADIOTHERAPY | EXPRESSION | ADJUVANT TEMOZOLOMIDE | RNA, Small Interfering - genetics | Glioblastoma - enzymology | Tumor Suppressor Proteins - antagonists & inhibitors | DNA Modification Methylases - antagonists & inhibitors | Humans | DNA Repair Enzymes - genetics | Antineoplastic Agents, Alkylating - pharmacology | Gene Knockdown Techniques | Dacarbazine - pharmacology | Tumor Suppressor Proteins - genetics | DNA Repair Enzymes - metabolism | Dacarbazine - analogs & derivatives | DNA Repair Enzymes - antagonists & inhibitors | DNA Glycosylases - metabolism | Gene Expression | Tumor Suppressor Proteins - metabolism | DNA Modification Methylases - metabolism | DNA Glycosylases - genetics | Mice, SCID | Xenograft Model Antitumor Assays | DNA Modification Methylases - genetics | Drug Resistance, Neoplasm - genetics | Animals | DNA Glycosylases - antagonists & inhibitors | DNA Repair | Cell Line, Tumor | Mice, Inbred NOD | Mice | Glioblastoma - drug therapy | Care and treatment | Patient outcomes | Research | Diagnosis | Methylation | Radiotherapy | Glioblastoma multiforme | Health aspects | Index Medicus | Abridged Index Medicus
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6. Full Text Malignant rhabdoid tumors originating within and outside the central nervous system are clinically and molecularly heterogeneous
by Pinto, Emilia M and Hamideh, Dima and Bahrami, Armita and Orr, Brent A and Lin, Tong and Pounds, Stanley and Zambetti, Gerard P and Pappo, Alberto S and Gajjar, Amar and Agnihotri, Sameer and Broniscer, Alberto
Acta Neuropathologica, ISSN 0001-6322, 8/2018, Volume 136, Issue 2, pp. 315 - 326
Multifocal synchronous or metachronous atypical teratoid rhabdoid tumors (ATRTs) and non-central nervous system malignant rhabdoid tumors (extra-CNS MRTs) are... 
Malignant rhabdoid tumor | Pathology | Multifocal | Neurosciences | Atypical teratoid rhabdoid tumor | Medicine & Public Health | DNA methylation | Children | GERM-LINE | SUBGROUPS | PATHOLOGY | NEUROSCIENCES | CLINICAL NEUROLOGY | PRIMITIVE NEUROECTODERMAL TUMOR | HSNF5/INI1 GENE | MUTATIONS | SPECTRUM | ATYPICAL TERATOID/RHABDOID TUMORS | KIDNEY | NATIONAL-WILMS-TUMOR | BRAIN | Genomics | Central nervous system | Development and progression | Genomes | Methylation | Health aspects | Cancer | Kidneys | Copy number | Nervous system | Myc protein | Metastases | Genotyping | Hedgehog protein | Deoxyribonucleic acid--DNA | Tumors | malignant rhabdoid tumor | atypical teratoid rhabdoid tumor | children | multifocal
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7. Full Text Spatial heterogeneity in medulloblastoma
by Morrissy, A. Sorana and Cavalli, Florence M. G and Remke, Marc and Ramaswamy, Vijay and Shih, David J. H and Holgado, Borja L and Farooq, Hamza and Donovan, Laura K and Garzia, Livia and Agnihotri, Sameer and Kiehna, Erin N and Mercier, Eloi and Mayoh, Chelsea and Papillon-Cavanagh, Simon and Nikbakht, Hamid and Gayden, Tenzin and Torchia, Jonathon and Picard, Daniel and Merino, Diana M and Vladoiu, Maria and Luu, Betty and Wu, Xiaochong and Daniels, Craig and Horswell, Stuart and Thompson, Yuan Yao and Hovestadt, Volker and Northcott, Paul A and Jones, David T. W and Peacock, John and Wang, Xin and Mack, Stephen C and Reimand, Jüri and Albrecht, Steffen and Fontebasso, Adam M and Thiessen, Nina and Li, Yisu and Schein, Jacqueline E and Lee, Darlene and Carlsen, Rebecca and Mayo, Michael and Tse, Kane and Tam, Angela and Dhalla, Noreen and Ally, Adrian and Chuah, Eric and Cheng, Young and Plettner, Patrick and Li, Haiyan I and Corbett, Richard D and Wong, Tina and Long, William and Loukides, James and Buczkowicz, Pawel and Hawkins, Cynthia E and Tabori, Uri and Rood, Brian R and Myseros, John S and Packer, Roger J and Korshunov, Andrey and Lichter, Peter and Kool, Marcel and Pfister, Stefan M and Schüller, Ulrich and Dirks, Peter and Huang, Annie and Bouffet, Eric and Rutka, James T and Bader, Gary D and Swanton, Charles and Ma, Yusanne and Moore, Richard A and Mungall, Andrew J and Majewski, Jacek and Jones, Steven J. M and Das, Sunit and Malkin, David and Jabado, Nada and Marra, Marco A and Taylor, Michael D
Nature Genetics, ISSN 1061-4036, 05/2017, Volume 49, Issue 5, pp. 780 - 788
Spatial heterogeneity of transcriptional and genetic markers between physically isolated biopsies of a single tumor poses major barriers to the identification... 
IN-VITRO | EVOLUTION | SOLID TUMORS | SUBTYPES | INTRATUMOR HETEROGENEITY | GROWTH | GENETICS & HEREDITY | EXPRESSION | RENAL-CELL CARCINOMA | T-CELLS | LYMPHOCYTES | Humans | Middle Aged | Gene Expression Regulation, Neoplastic | Transcriptome | Child, Preschool | Male | INDEL Mutation | DNA Copy Number Variations | Medulloblastoma - pathology | Aged, 80 and over | Adult | Female | Cerebellar Neoplasms - pathology | Medulloblastoma - genetics | Child | Principal Component Analysis | Genome-Wide Association Study | Gene Expression Profiling - methods | Cerebellar Neoplasms - genetics | Reverse Transcriptase Polymerase Chain Reaction | Genetic Heterogeneity | Aged | Polymorphism, Single Nucleotide | Mutation | Cluster Analysis | Brain | Gene mutations | Biopsy | Medulloblastoma | Genetic aspects | Diagnosis | Health aspects | Methods | Pediatrics | Laboratories | Neuropathology | Brain cancer | Colleges & universities | Oncology | Genomes | Biology | Neurosurgery | Consortia | Heterogeneity | Immunology | Renal cell carcinoma | Genetics | Bioindicators | Research centers | Medical research | Hematology | Gene expression | Children & youth | Genetic markers | Hospitals | Glioma | Biomarkers | Tumors | Index Medicus | Spatial heterogeneity | glioblastoma multiforme | renal cell carcinoma | gene expression profiling | medulloblastoma | whole exome sequencing
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8. Full Text CIC protein instability contributes to tumorigenesis in glioblastoma
by Bunda, Severa and Heir, Pardeep and Metcalf, Julie and Li, Annie Si Cong and Agnihotri, Sameer and Pusch, Stefan and Yasin, Mamatjan and Li, Mira and Burrell, Kelly and Mansouri, Sheila and Singh, Olivia and Wilson, Mark and Alamsahebpour, Amir and Nejad, Romina and Choi, Bethany and Kim, David and von Deimling, Andreas and Zadeh, Gelareh and Aldape, Kenneth
Nature Communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 661 - 17
Capicua (CIC) is a transcriptional repressor that counteracts activation of genes downstream of receptor tyrosine kinase (RTK)/Ras/ERK signaling. It is... 
STEM-CELLS | RAS | PATHWAY | UBIQUITIN | GLIOMA | MULTIDISCIPLINARY SCIENCES | TRANSCRIPTION | MODEL | REPRESSOR CAPICUA | EGFR | ERK | Tyrosine | Phosphorylation | Stability | Transcription | Glioblastoma | Extracellular signal-regulated kinase | Ras protein | Kinases | Degradation | Proteins | Signaling | Clonal deletion | Transcription activation | Deletion | Protein-tyrosine kinase receptors | Tumorigenesis | Protein-tyrosine kinase | Binding sites | Ubiquitin-protein ligase | Deoxyribonucleic acid--DNA | Tumors | Index Medicus
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9. Full Text Developmental profile and regulation of the glycolytic enzyme hexokinase 2 in normal brain and glioblastoma multiforme
by Wolf, Amparo and Agnihotri, Sameer and Munoz, Diana and Guha, Abhijit
Neurobiology of Disease, ISSN 0969-9961, 2011, Volume 44, Issue 1, pp. 84 - 91
Abstract Highly proliferating cells, normal or transformed, undergo aerobic glycolysis whereby glucose is metabolized to lactate rather than by oxidative... 
Neurology | Hexokinase 2 | Embryonic development | Aerobic glycolysis | Glioblastoma multiforme | CANCER-CELLS | GLIOMAS | NEUROSCIENCES | GLUCOSE CATABOLISM | PYRUVATE-KINASE | METABOLISM | GENE | II HEXOKINASE | TUMOR-GROWTH | EXPRESSION | EMBRYOS | Brain - embryology | Glioblastoma - enzymology | Humans | Brain - enzymology | Gene Expression Regulation, Developmental - genetics | Brain - growth & development | Sulfites - pharmacology | Central Nervous System - growth & development | DNA Methylation | Glioblastoma - genetics | Hexokinase - genetics | Brain Chemistry - genetics | Gene Expression Regulation, Developmental - physiology | Cell Line | Brain Neoplasms - enzymology | Introns - genetics | Isoenzymes - genetics | Mice, Inbred C57BL | Brain Neoplasms - genetics | Reverse Transcriptase Polymerase Chain Reaction | Animals | CpG Islands - genetics | Mice | Hexokinase - metabolism | Methylation | Central Nervous System - enzymology | Enzymes | Lactates | Brain | Glucose metabolism | Analysis | Physiological aspects | Glucose | Dextrose | Index Medicus
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10. Full Text The genomic landscape of schwannoma
by Agnihotri, Sameer and Jalali, Shahrzad and Wilson, Mark R and Danesh, Arnavaz and Li, Mira and Klironomos, George and Krieger, Jonathan R and Mansouri, Alireza and Khan, Osaama and Mamatjan, Yasin and Landon-Brace, Natalie and Tung, Takyee and Dowar, Mark and Li, Tiantian and Bruce, Jeffrey P and Burrell, Kelly E and Tonge, Peter D and Alamsahebpour, Amir and Krischek, Boris and Agarwalla, Pankaj Kumar and Bi, Wenya Linda and Dunn, Ian F and Beroukhim, Rameen and Fehlings, Michael G and Bril, Vera and Pagnotta, Stefano M and Iavarone, Antonio and Pugh, Trevor J and Aldape, Kenneth D and Zadeh, Gelareh
Nature Genetics, ISSN 1061-4036, 11/2016, Volume 48, Issue 11, pp. 1339 - 1348
Schwannomas are common peripheral nerve sheath tumors that can cause debilitating morbidities. We performed an integrative analysis to determine genomic... 
ADENOCARCINOMA | COMPLEXITY | GENETICS & HEREDITY | GENE-EXPRESSION | RESISTANCE | CLASSIFICATION | INHIBITORS | ESTABLISHMENT | CANCER | TUMORS | DRIVER MUTATIONS | Humans | Adaptor Proteins, Vesicular Transport - genetics | Male | RNA, Neoplasm | Exome | DNA Methylation | Ear Neoplasms - genetics | Neurilemmoma - genetics | DNA Mutational Analysis | DNA, Neoplasm | Serine Endopeptidases - genetics | Female | Vestibule, Labyrinth | High-Temperature Requirement A Serine Peptidase 1 | Gene Fusion | Mice, SCID | Sequence Analysis, DNA | Animals | Sequence Analysis, RNA | Spinal Neoplasms - genetics | Cell Line, Tumor | Mice, Inbred NOD | Mice | Mutation | Genome, Human | Genotype | Cellular signal transduction | Genetic aspects | Gene expression | Health aspects | Proteins | Studies | Genomics | Genomes | Kinases | Hearing impairment | Tumors | Cancer | Index Medicus
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11. Full Text Therapeutic radiation for childhood cancer drives structural aberrations of NF2 in meningiomas
by Agnihotri, Sameer and Suppiah, Suganth and Tonge, Peter D and Jalali, Shahrzad and Danesh, Arnavaz and Bruce, Jeffery P and Mamatjan, Yasin and Klironomos, George and Gonen, Lior and Au, Karolyn and Mansouri, Sheila and Karimi, Sharin and Sahm, Felix and Von Deimling, Andreas and Taylor, Michael D and Laperriere, Normand J and Pugh, Trevor J and Aldape, Kenneth D and Zadeh, Gelareh
Nature Communications, ISSN 2041-1723, 12/2017, Volume 8, Issue 1, pp. 186 - 7
Cranial radiotherapy improves survival of the most common childhood cancers, including brain tumors and leukemia. Unfortunately, long-term survivors are faced... 
SMO | SIGNATURES | NEOPLASMS | MULTIDISCIPLINARY SCIENCES | AKT1 | CENTRAL-NERVOUS-SYSTEM | MUTATIONS | RADIOTHERAPY | OF-THE-LITERATURE | SURVIVORS | BRAIN-TUMORS | Radiation effects | Brain cancer | Radiation | Neurofibromin 2 | Ribonucleic acid--RNA | DNA methylation | Children | Aberration | Methylation | Chromosomes | Meningioma | Tumors | Cancer | Index Medicus
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12. Full Text DIPG-22. GENETIC MODELING IMPLICATES RAS AND MYC AS KEY EPIGENETICALLY ACTIVATED TRANSCRIPTIONAL TARGETS OF H3K27M-DRIVEN CANCER
by Siddaway, Robert and Pajovic, Sanja and Kim, Byungjin and Ryall, Scott and Agnihotri, Sameer and Li, Christopher and Hawkins, Cynthia
Neuro-Oncology, ISSN 1522-8517, 04/2019, Volume 21, Issue Supplement_2, pp. ii73 - ii73
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13. Full Text TERT promoter mutations are highly recurrent in SHH subgroup medulloblastoma
by Remke, Marc and Ramaswamy, E.A and Peacock, Munro and Shih, David J and Koelsche, Christian and Northcott, Paul A and Hill, Nadia and Cavalli, Silvia and Kool, Marcel and Wang, Xin and Mack, Stephen and Barszczyk, Mark and Morrissy, A. Sorana and Wu, Xiaochong and Agnihotri, Sameer and Luu, Phan and Jones, David and Garzia, Livia and Dubuc, Aian and Zhukova, Nataliya and Vanner, Robert and Kros, Johan and French, Pim and Meir, Erwin and Vibhakar, Rajeev and Zitterbart, Karel and Chan, Jennifer and Bognár, László and Klekner, Almos and Lach, Boleslaw and Jung, Shin and Saad, Fred and Liau, Linda and Albrecht, Steffen and Zollo, Maurizio and Cooper, Michael and Thompson, Reid and Delattre, Olivier and Bourdeaut, Franck and Doz, François and Garami, Miklós and Hauser, Peter and Carlotti, Carlos and Van Meter, Timothy and Massimi, Luca and Fults, Daniel and Pomeroy, Laura and Kumabe, Toshiro and Ra, Young Shin and Leonard, Jeffrey and Elbabaa, Samer and Mora, Jaume and Rubin, Joshua and Cho, Yoon-Jae and McLendon, Roger and Bigner, Darell and Eberhart, Charles and Fouladi, Maryam and Wechsler-Reya, Robert and Faria, Rui and Croul, Sidney and Huang, Anding and Bouffet, Eric and Hawkins, Cynthia and Dirks, Maaike and Weiss, William and Schüller, Ulrich and Pollack, Aaron and Rutkowski, Piotr and Meyronet, David and Jouvet, Anne and Fèvre-Montange, Michelle and Jabado, Nada and Perek-Polnik, Marta and Grajkowska, Wieslawa and Kim, Seung-Ki and Rutka, James and Malkin, Elissa and Tabori, Uri and Pfister, Stefan and Korshunov, Aney and Deimling, Aneas and Taylor, Michael
Acta Neuropathologica, ISSN 0001-6322, 10/2013, Volume 126, Issue 6, pp. 917 - 929
textabstractTelomerase reverse transcriptase (TERT) promoter mutations were recently shown to drive telomerase activity in various cancer types, including... 
TERT promoter mutations | Pathology | Neurosciences | Medicine & Public Health | Medulloblastoma | Adult | SHH pathway | GLIOMAS | CELLS | METHYLATION | DISTINCT | PATHOLOGY | TUMORS | NEUROSCIENCES | CLINICAL NEUROLOGY | GENOMICS | OCCUR | TELOMERASE ACTIVITY | Promoter Regions, Genetic | Prognosis | Humans | Middle Aged | Brain Neoplasms - pathology | Brain Neoplasms - genetics | Child, Preschool | Genotype | Infant | Male | Gene Expression Profiling | Telomerase - genetics | DNA Mutational Analysis | Medulloblastoma - pathology | Adolescent | Female | Mutation | Medulloblastoma - genetics | Child | Gene mutations | Analysis | Genomics | Cytogenetics | Genetic aspects | Telomerase | Tumors | Index Medicus | Age | Original Paper
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