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1. Full Text Genomic Classification of Cutaneous Melanoma
by Akbani, Rehan and Akdemir, Kadir C and Aksoy, B. Arman and Albert, Monique and Ally, Adrian and Amin, Samirkumar B and Arachchi, Harindra and Arora, Arshi and Auman, J. Todd and Ayala, Brenda and Baboud, Julien and Balasundaram, Miruna and Balu, Saianand and Barnabas, Nandita and Bartlett, John and Bartlett, Pam and Bastian, Boris C and Baylin, Stephen B and Behera, Madhusmita and Belyaev, Dmitry and Benz, Christopher and Bernard, Brady and Beroukhim, Rameen and Bir, Natalie and Black, Aaron D and Bodenheimer, Tom and Boice, Lori and Boland, Genevieve M and Bono, Riccardo and Bootwalla, Moiz S and Bosenberg, Marcus and Bowen, Jay and Bowlby, Reanne and Bristow, Christopher A and Brockway-Lunardi, Laura and Brooks, Denise and Brzezinski, Jakub and Bshara, Wiam and Buda, Elizabeth and Burns, William R and Butterfield, Yaron S.N and Button, Michael and Calderone, Tiffany and Cappellini, Giancarlo Antonini and Carter, Candace and Carter, Scott L and Cherney, Lynn and Cherniack, Andrew D and Chevalier, Aaron and Chin, Lynda and Cho, Juok and Cho, Raymond J and Choi, Yoon-La and Chu, Andy and Chudamani, Sudha and Cibulskis, Kristian and Ciriello, Giovanni and Clarke, Amanda and Coons, Stephen and Cope, Leslie and Crain, Daniel and Curley, Erin and Danilova, Ludmila and D’Atri, Stefania and Davidsen, Tanja and Davies, Michael A and Delman, Keith A and Demchok, John A and Deng, Qixia A and Deribe, Yonathan Lissanu and Dhalla, Noreen and Dhir, Rajiv and DiCara, Daniel and Dinikin, Michael and Dubina, Michael and Ebrom, J. Stephen and Egea, Sophie and Eley, Greg and Engel, Jay and Eschbacher, Jennifer M and Fedosenko, Konstantin V and Felau, Ina and Fennell, Timothy and Ferguson, Martin L and Fisher, Sheila and Flaherty, Keith T and Frazer, Scott and Frick, Jessica and Fulidou, Victoria and Gabriel, Stacey B and Gao, Jianjiong and Gardner, Johanna and Garraway, Levi A and Gastier-Foster, Julie M and Gaudioso, Carmelo and Gehlenborg, Nils and Genovese, Giannicola and Gerken, Mark and Gershenwald, Jeffrey E and Getz, Gad and ... and The Cancer Genome Atlas Network and Canc Genome Atlas Network and Cancer Genome Atlas Network
Cell (Cambridge), ISSN 0092-8674, 06/2015, Volume 161, Issue 7, pp. 1681 - 1696
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Skin Neoplasms - classification | Melanoma - genetics | United States | Humans | Skin Neoplasms - genetics | Databases, Genetic | National Cancer Institute (U.S.) | Mutation | Melanoma - classification | RNA | Gene mutations | Gene expression | Analysis | Melanoma | Index Medicus
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2. Full Text Integrated Genomic Characterization of Papillary Thyroid Carcinoma
by Agrawal, Nishant and Akbani, Rehan and Aksoy, B. Arman and Ally, Adrian and Arachchi, Harindra and Asa, Sylvia L and Auman, J. Todd and Balasundaram, Miruna and Balu, Saianand and Baylin, Stephen B and Behera, Madhusmita and Bernard, Brady and Beroukhim, Rameen and Bishop, Justin A and Black, Aaron D and Bodenheimer, Tom and Boice, Lori and Bootwalla, Moiz S and Bowen, Jay and Bowlby, Reanne and Bristow, Christopher A and Brookens, Robin and Brooks, Denise and Bryant, Robert and Buda, Elizabeth and Butterfield, Yaron S.N and Carling, Tobias and Carlsen, Rebecca and Carter, Scott L and Carty, Sally E and Chan, Timothy A and Chen, Amy Y and Cherniack, Andrew D and Cheung, Dorothy and Chin, Lynda and Cho, Juok and Chu, Andy and Chuah, Eric and Cibulskis, Kristian and Ciriello, Giovanni and Clarke, Amanda and Clayman, Gary L and Cope, Leslie and Copland, John A and Covington, Kyle and Danilova, Ludmila and Davidsen, Tanja and Demchok, John A and DiCara, Daniel and Dhalla, Noreen and Dhir, Rajiv and Dookran, Sheliann S and Dresdner, Gideon and Eldridge, Jonathan and Eley, Greg and El-Naggar, Adel K and Eng, Stephanie and Fagin, James A and Fennell, Timothy and Ferris, Robert L and Fisher, Sheila and Frazer, Scott and Frick, Jessica and Gabriel, Stacey B and Ganly, Ian and Gao, Jianjiong and Garraway, Levi A and Gastier-Foster, Julie M and Getz, Gad and Gehlenborg, Nils and Ghossein, Ronald and Gibbs, Richard A and Giordano, Thomas J and Gomez-Hernandez, Karen and Grimsby, Jonna and Gross, Benjamin and Guin, Ranabir and Hadjipanayis, Angela and Harper, Hollie A and Hayes, D. Neil and Heiman, David I and Herman, James G and Hoadley, Katherine A and Hofree, Matan and Holt, Robert A and Hoyle, Alan P and Huang, Franklin W and Huang, Mei and Hutter, Carolyn M and Ideker, Trey and Iype, Lisa and Jacobsen, Anders and Jefferys, Stuart R and Jones, Corbin D and Jones, Steven J.M and Kasaian, Katayoon and Kebebew, Electron and Khuri, Fadlo R and Kim, Jaegil and Kramer, Roger and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell (Cambridge), ISSN 0092-8674, 10/2014, Volume 159, Issue 3, pp. 676 - 690
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Thyroid Neoplasms - genetics | Carcinoma, Papillary | Humans | Carcinoma - genetics | Gene Fusion | Mutation | Carcinoma - pathology | Thyroid Gland - cytology | Thyroid Gland - metabolism | DNA Copy Number Variations | Thyroid Cancer, Papillary | Thyroid Neoplasms - pathology | Thyroid cancer | Carcinoma | Genetic aspects | Chemical properties | Methylation | Gene expression | Cancer | Index Medicus
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3. Full Text An Integrated Metabolic Atlas of Clear Cell Renal Cell Carcinoma
by Hakimi, A. Ari and Reznik, Ed and Lee, Chung-Han and Creighton, Chad J and Brannon, A. Rose and Luna, Augustin and Aksoy, B. Arman and Liu, Eric Minwei and Shen, Ronglai and Lee, William and Chen, Yang and Stirdivant, Steve M and Russo, Paul and Chen, Ying-Bei and Tickoo, Satish K and Reuter, Victor E and Cheng, Emily H and Sander, Chris and Hsieh, James J
Cancer cell, ISSN 1535-6108, 01/2016, Volume 29, Issue 1, pp. 104 - 116
Oncology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Genetic Predisposition to Disease - genetics | Kidney Neoplasms - genetics | Prognosis | Carcinoma, Renal Cell - diagnosis | Humans | Carcinoma, Renal Cell - genetics | Gene Expression Profiling - methods | Biomarkers, Tumor - genetics | Neoplasm Staging | Metabolomics - methods | Gene Expression Regulation, Neoplastic - genetics | Kidney Neoplasms - diagnosis | Antioxidants | Metabolites | Genomics | Development and progression | Carcinoma, Renal cell | Nucleotide sequencing | DNA sequencing | Medical colleges | Resveratrol | Amino acids | Metastasis | Index Medicus
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4. Full Text Pileup.js: A JavaScript library for interactive and in-browser visualization of genomic data
by Vanderkam, Dan and Aksoy, B. Arman and Hodes, Isaac and Perrone, Jaclyn and Hammerbacher, Jeff
Bioinformatics, ISSN 1367-4803, 08/2016, Volume 32, Issue 15, pp. 2378 - 2379
Programming Languages | Computer Graphics | Software | Internet | Genome | Genomics | Index Medicus | Applications Notes
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5. Full Text Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas
by Brat, Daniel J and Verhaak, Roel G. W and Aldape, Kenneth D and Yung, W. K. Alfred and Salama, Sofie R and Cooper, Lee A. D and Rheinbay, Esther and Miller, C. Ryan and Vitucci, Mark and Morozova, Olena and Robertson, A. Gordon and Noushmehr, Houtan and Laird, Peter W and Cherniack, Andrew D and Akbani, Rehan and Huse, Jason T and Ciriello, Giovanni and Poisson, Laila M and Barnholtz-Sloan, Jill S and Berger, Mitchel S and Brennan, Cameron and Colen, Rivka R and Colman, Howard and Flanders, Adam E and Giannini, Caterina and Grifford, Mia and Iavarone, Antonio and Jain, Rajan and Joseph, Isaac and Kim, Jaegil and Kasaian, Katayoon and Mikkelsen, Tom and Murray, Bradley A and O'Neill, Brian Patrick and Pachter, Lior and Parsons, Donald W and Sougnez, Carrie and Sulman, Erik P and Vandenberg, Scott R and Van Meir, Erwin G and Von Deimling, Andreas and Zhang, Hailei and Crain, Daniel and Lau, Kevin and Mallery, David and Morris, Scott and Paulauskis, Joseph and Penny, Robert and Shelton, Troy and Sherman, Mark and Yena, Peggy and Black, Aaron and Bowen, Jay and Dicostanzo, Katie and Gastier-Foster, Julie and Leraas, Kristen M and Lichtenberg, Tara M and Pierson, Christopher R and Ramirez, Nilsa C and Taylor, Cynthia and Weaver, Stephanie and Wise, Lisa and Zmuda, Erik and Davidsen, Tanja and Demchok, John A and Eley, Greg and Ferguson, Martin L and Hutter, Carolyn M and Shaw, Kenna R. Mills and Ozenberger, Bradley A and Sheth, Margi and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean Claude and Ayala, Brenda and Baboud, Julien and Chudamani, Sudha and Jensen, Mark A and Liu, Jia and Pihl, Todd and Raman, Rohini and Wan, Yunhu and Wu, Ye and Ally, Adrian and Auman, J. Todd and Balasundaram, Miruna and Balu, Saianand and Baylin, Stephen B and Beroukhim, Rameen and Bootwalla, Moiz S and Bowlby, Reanne and Bristow, Christopher A and Brooks, Denise and Butterfield, Yaron and Carlsen, Rebecca and Carter, Scott and Chin, Lynda and Chu, Andy and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
The New England journal of medicine, ISSN 0028-4793, 06/2015, Volume 372, Issue 26, pp. 2481 - 2498
Medicine, General & Internal | Life Sciences & Biomedicine | General & Internal Medicine | Science & Technology | Glioma - mortality | Signal Transduction | Humans | Middle Aged | Kaplan-Meier Estimate | Proportional Hazards Models | Male | Sequence Analysis, DNA | Glioma - metabolism | Glioma - genetics | Chromosomes, Human, Pair 19 | Genes, p53 | Chromosomes, Human, Pair 1 | Neoplasm Grading | Glioblastoma - genetics | Adolescent | Adult | Female | Aged | DNA, Neoplasm - analysis | Mutation | Cluster Analysis | Usage | Gene mutations | Gliomas | Analysis | Exome sequencing | Genetic aspects | Diagnosis | Research | Risk factors | Genomic analysis | Nucleotide sequence | Copy number | p53 Protein | Genomics | Glioblastoma | Gene expression | Glioma | DNA methylation | miRNA | Cancer | Tumors | Statistical analysis | Brain cancer | Genomes | Cancer therapies | Consent | Medical prognosis | MicroRNAs | Classification | Deoxyribonucleic acid--DNA | Index Medicus | Abridged Index Medicus
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6. Full Text Mutations in an Innate Immunity Pathway Are Associated with Poor Overall Survival Outcomes and Hypoxic Signaling in Cancer
by Olcina, Monica M and Balanis, Nikolas G and Kim, Ryan K and Aksoy, B. Arman and Kodysh, Julia and Thompson, Michael J and Hammerbacher, Jeff and Graeber, Thomas G and Giaccia, Amato J
Cell reports (Cambridge), ISSN 2211-1247, 12/2018, Volume 25, Issue 13, pp. 3721 - 3732.e6
hypoxia | cancer | mutations | innate immunity | complement-mediated cytotoxicity | complement system | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Cytotoxicity, Immunologic - genetics | Signal Transduction | Colorectal Neoplasms - genetics | HCT116 Cells | Humans | Immunity, Innate - genetics | Male | Mutation - genetics | Tumor Hypoxia - genetics | Animals | Colorectal Neoplasms - immunology | Survival Analysis | Antigens, Neoplasm - metabolism | Adult | Complement System Proteins - genetics | Mice | Colorectal Neoplasms - pathology | Index Medicus
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7. Full Text The Somatic Genomic Landscape of Glioblastoma
by Brennan, Cameron W and Verhaak, Roel G.W and McKenna, Aaron and Campos, Benito and Noushmehr, Houtan and Salama, Sofie R and Zheng, Siyuan and Chakravarty, Debyani and Sanborn, J. Zachary and Berman, Samuel H and Beroukhim, Rameen and Bernard, Brady and Wu, Chang-Jiun and Genovese, Giannicola and Shmulevich, Ilya and Barnholtz-Sloan, Jill and Zou, Lihua and Vegesna, Rahulsimham and Shukla, Sachet A and Ciriello, Giovanni and Yung, W.K and Zhang, Wei and Sougnez, Carrie and Mikkelsen, Tom and Aldape, Kenneth and Bigner, Darell D and Van Meir, Erwin G and Prados, Michael and Sloan, Andrew and Black, Keith L and Eschbacher, Jennifer and Finocchiaro, Gaetano and Friedman, William and Andrews, David W and Guha, Abhijit and Iacocca, Mary and O’Neill, Brian P and Foltz, Greg and Myers, Jerome and Weisenberger, Daniel J and Penny, Robert and Kucherlapati, Raju and Perou, Charles M and Hayes, D. Neil and Gibbs, Richard and Marra, Marco and Mills, Gordon B and Lander, Eric and Spellman, Paul and Wilson, Richard and Sander, Chris and Weinstein, John and Meyerson, Matthew and Gabriel, Stacey and Laird, Peter W and Haussler, David and Getz, Gad and Chin, Lynda and Benz, Christopher and Barnholtz-Sloan, Jill and Barrett, Wendi and Ostrom, Quinn and Wolinsky, Yingli and Black, Keith L and Bose, Bikash and Boulos, Paul T and Boulos, Madgy and Brown, Jenn and Czerinski, Christine and Eppley, Matthew and Iacocca, Mary and Kempista, Thelma and Kitko, Teresa and Koyfman, Yakov and Rabeno, Brenda and Rastogi, Pawan and Sugarman, Michael and Swanson, Patricia and Yalamanchii, Kennedy and Otey, Ilana P and Liu, Yingchun Spring and Xiao, Yonghong and Auman, J.Todd and Chen, Peng-Chieh and Hadjipanayis, Angela and Lee, Eunjung and Lee, Semin and Park, Peter J and Seidman, Jonathan and Yang, Lixing and Kucherlapati, Raju and Kalkanis, Steven and Mikkelsen, Tom and Poisson, Laila M and Raghunathan, Aditya and Scarpace, Lisa and Bernard, Brady and Bressler, Ryan and Eakin, Andrea and Iype, Lisa and ... and TCGA Research Network and TCGA Res Network