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1. Full Text Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease
by Nativio, Raffaella and Donahue, Greg and Berson, Amit and Lan, Yemin and Amlie-Wolf, Alexandre and Tuzer, Ferit and Toledo, Jon B and Gosai, Sager J and Gregory, Brian D and Torres, Claudio and Trojanowski, John Q and Wang, Li-San and Johnson, F. Brad and Bonini, Nancy M and Berger, Shelley L
Nature neuroscience, ISSN 1097-6256, 04/2018, Volume 21, Issue 4, pp. 497 - 505
Neurosciences | Neurosciences & Neurology | Life Sciences & Biomedicine | Science & Technology | Alzheimer Disease - physiopathology | Genome-Wide Association Study | Humans | Middle Aged | Male | Alzheimer Disease - pathology | Brain - metabolism | Epigenesis, Genetic - physiology | Analysis of Variance | Chromatin Immunoprecipitation | Epigenomics - methods | Aging | Brain - pathology | Female | Aged | Alzheimer Disease - genetics | Histone Deacetylase 1 - genetics | Histone Deacetylase 1 - metabolism | Chromatin | Genomes | Research | Comparative analysis | Gene expression | Alzheimer's disease | Risk factors | Enrichment | Temporal lobe | Health risks | Quantitative trait loci | Genetic variance | Genotype & phenotype | Neurodegeneration | Older people | Epigenetics | Geriatrics | Index Medicus
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2. Full Text Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons
by Liu, Elaine Y and Russ, Jenny and Cali, Christopher P and Phan, Jessica M and Amlie-Wolf, Alexandre and Lee, Edward B
Cell reports (Cambridge), ISSN 2211-1247, 04/2019, Volume 27, Issue 5, pp. 1409 - 1421.e6
motor neuron disease | RNA | reverse transcriptase | frontotemporal dementia | autoregulation | splicing | histone | chromatin | amyotrophic lateral sclerosis | ATAC-seq | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Index Medicus
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3. Full Text An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer’s disease
by Nativio, Raffaella and Lan, Yemin and Donahue, Greg and Sidoli, Simone and Berson, Amit and Srinivasan, Ananth R and Shcherbakova, Oksana and Amlie-Wolf, Alexandre and Nie, Ji and Cui, Xiaolong and He, Chuan and Wang, Li-San and Garcia, Benjamin A and Trojanowski, John Q and Bonini, Nancy M and Berger, Shelley L
Nature genetics, ISSN 1061-4036, 10/2020, Volume 52, Issue 10, pp. 1024 - 1035
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | RNA sequencing | Epigenetic inheritance | Brain | Chromatin | RNA | Genomics | Genes | Development and progression | Genomes | Genetic transcription | Advertising executives | Analysis | Genetic aspects | Alzheimer's disease | Flow cytometry | Transcription factors | Profiling | Transcription | Feedback loops | Gene sequencing | Datasets | Consortia | Pathways | Neurodegeneration | Autopsy | Cell cycle | DNA methylation | Histones | Aging | Amyloid | Age | Neurodegenerative diseases | Medical treatment | Ribonucleic acid--RNA | Gene expression | Molecular modelling | Epigenetics | Alzheimers disease | Protein interaction | Histone H3 | Apoptosis | Reconfiguration | Index Medicus
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4. Full Text Publisher Correction: Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease
by Nativio, Raffaella and Donahue, Greg and Berson, Amit and Lan, Yemin and Amlie-Wolf, Alexandre and Tuzer, Ferit and Toledo, Jon B and Gosai, Sager J and Gregory, Brian D and Torres, Claudio and Trojanowski, John Q and Wang, Li-San and Johnson, F. Brad and Bonini, Nancy M and Berger, Shelley L
Nature neuroscience, ISSN 1097-6256, 03/2018, Volume 21, Issue 7, pp. 1 - 1018
Aging | Error correction
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5. Full Text Activity of the poly(A) binding protein MSUT2 determines susceptibility to pathological tau in the mammalian brain
by Wheeler, Jeanna M and McMillan, Pamela and Strovas, Timothy J and Liachko, Nicole F and Amlie-Wolf, Alexandre and Kow, Rebecca L and Klein, Ronald L and Szot, Patricia and Robinson, Linda and Guthrie, Chris and Saxton, Aleen and Kanaan, Nicholas M and Raskind, Murray and Peskind, Elaine and Trojanowski, John Q and Lee, Virginia M. Y and Wang, Li-San and Keene, C. Dirk and Bird, Thomas and Schellenberg, Gerard D and Kraemer, Brian
Science translational medicine, ISSN 1946-6234, 12/2019, Volume 11, Issue 523, p. eaao6545
Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Cell Biology | Research & Experimental Medicine | Poly(A) | Animal models | Neurodegenerative diseases | Toxicity | Macromolecules | Transgenic mice | Inflammation | Ribonucleic acid--RNA | Neuromodulation | RNA-binding protein | Tau protein | Neurodegeneration | Autopsy | Polyadenylation | Alzheimer's disease | Index Medicus
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6. Full Text Inferring the Molecular Mechanisms of Noncoding Alzheimer's Disease-Associated Genetic Variants
by Amlie-Wolf, Alexandre and Tang, Mitchell and Way, Jessica and Dombroski, Beth and Jiang, Ming and Vrettos, Nicholas and Chou, Yi-Fan and Zhao, Yi and Kuzma, Amanda and Mlynarski, Elisabeth E and Leung, Yuk Yee and Brown, Christopher D and Wang, Li-San and Schellenberg, Gerard D
Journal of Alzheimer's disease, ISSN 1387-2877, 01/2019, Volume 72, Issue 1, pp. 301 - 318
Neurosciences | Neurosciences & Neurology | Life Sciences & Biomedicine | Science & Technology | Target recognition | Statistical analysis | Downstream effects | Genes | Genomics | Linkage disequilibrium | Genetic diversity | Ribonucleic acid--RNA | Gene expression | Tissues | Loci | Biological activity | Genetic variance | Enhancers | Biological effects | Algorithms | Molecular modelling | Apolipoprotein E | Regulatory mechanisms (biology) | Localization | Bayesian analysis | Index Medicus | Genetics | Alzheimer’s Disease | Long noncoding RNA | Bioinformatics
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7. Full Text DASHR: Database of Small human noncoding RNAs
by Leung, Yuk Yee and Kuksa, Pavel P and Amlie-Wolf, Alexandre and Valladares, Otto and Ungar, Lyle H and Kannan, Sampath and Gregory, Brian D and Wang, Li-San
Nucleic acids research, ISSN 0305-1048, 2016, Volume 44, Issue 1, pp. D216 - D222
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | RNA Processing, Post-Transcriptional | Humans | Molecular Sequence Annotation | RNA, Small Untranslated - chemistry | RNA, Small Untranslated - genetics | Databases, Nucleic Acid | RNA, Small Untranslated - metabolism | Index Medicus | Database Issue
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8. Full Text DASHR 2.0: integrated database of human small non-coding RNA genes and mature products
by Kuksa, Pavel P and Amlie-Wolf, Alexandre and Katanić, Živadin and Valladares, Otto and Wang, Li-San and Leung, Yuk Yee
Bioinformatics, ISSN 1367-4803, 03/2019, Volume 35, Issue 6, pp. 1033 - 1039
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Sequence Analysis, RNA | Genomics | Humans | RNA, Long Noncoding | Software | RNA, Small Untranslated - supply & distribution | Databases, Nucleic Acid | Index Medicus | Original Papers
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9. Full Text Genome‐wide profiling of the noncoding regulatory mechanisms in Alzheimer’s disease
by Kleidermacher, Lauren and Kuksa, Pavel and Lee, Chien‐Yueh and Amlie‐Wolf, Alexandre and Schellenberg, Gerard D and Wang, Li‐San and Leung, Yuk Yee
Alzheimer's & dementia, ISSN 1552-5260, 12/2020, Volume 16, p. n/a
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10. Full Text P3-122: INFERRING THE NONCODING REGULATORY MECHANISMS UNDERLYING GENETIC SUSCEPTIBILITY CONTRIBUTED BY DIFFERENT CSF ENDOPHENOTYPES IN AD
by Leung, Yuk Yee and Amlie-Wolf, Alexandre and Wang, Li-San and Schellenberg, Gerard D
Alzheimer's & dementia, ISSN 1552-5260, 07/2019, Volume 15, pp. P977 - P977
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11. Full Text INFERNO: inferring the molecular mechanisms of noncoding genetic variants
by Amlie-Wolf, Alexandre and Tang, Mitchell and Mlynarski, Elisabeth E and Kuksa, Pavel P and Valladares, Otto and Katanic, Zivadin and Tsuang, Debby and Brown, Christopher D and Schellenberg, Gerard D and Wang, Li-San
Nucleic acids research, ISSN 0305-1048, 09/2018, Volume 46, Issue 17, pp. 8740 - 8753
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Computational Biology
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