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1. Full Text Structure, function and diversity of the healthy human microbiome
by Huttenhower, Curtis and Gevers, Dirk and Knight, Rob and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Creasy, Heather H and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Giglio, Michelle G and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien and Paul Brooks, J and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S. G and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, Wm and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry J and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and Goll, Johannes and Gonzalez, Antonio and Griggs, Allison and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature, ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 207 - 214
Studies of the human microbiome have revealed that even healthy individuals differ remarkably in the microbes that occupy habitats such as the gut, skin and... 
IDENTIFICATION | BACTERIA | MULTIDISCIPLINARY SCIENCES | Metagenomics | Health | Humans | Male | Biodiversity | Bacteria - genetics | Young Adult | Phenotype | Ecosystem | Adolescent | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adult | Female | Metabolic Networks and Pathways - physiology | Metagenome | Microbiota (Symbiotic organisms) | Research | Biological diversity | Microbiology | Disease | Habitats | Taxonomy | Data processing | Skin | Life sciences | Genomes
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2. Full Text A framework for human microbiome research
by Methé, Barbara A and Nelson, Karen E and Pop, Mihai and Creasy, Heather H and Giglio, Michelle G and Huttenhower, Curtis and Gevers, Dirk and Petrosino, Joseph F and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien R and Brooks, Paul and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, W and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature, ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 215 - 221
A variety of microbial communities and their genes (the microbiome) exist throughout the human body, with fundamental roles in human health and disease. The... 
MULTIDISCIPLINARY SCIENCES | CATALOG | Young Adult | Reference Standards | Humans | Adolescent | Metagenomics - methods | RNA, Ribosomal, 16S - genetics | Adult | Female | Male | Statistics as Topic | Bacteria - genetics | Metagenome | Genetic research | Microbiological research | Genomes | Research | Microbiota (Symbiotic organisms) | Studies | Medicine | Microbiology | Publications | Taxonomy | Genomics | Data processing | Manuscripts
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3. Full Text Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
by Yonatan H. Grad and Marc Lipsitch and Michael Feldgarden and Harindra M. Arachchi and Gustavo C. Cerqueira and Michael FitzGerald and Paul Godfrey and Brian J. Haas and Cheryl I. Murphy and Carsten Russ and Sean Sykes and Bruce J. Walker and Jennifer R. Wortman and Sarah Young and Qiandong Zeng and Amr Abouelleil and James Bochicchio and Sara Chauvin and Timothy DeSmet and Sharvari Gujja and Caryn McCowan and Anna Montmayeur and Scott Steelman and Jakob Frimodt-Møller and Andreas M. Petersen and Carsten Struve and Karen A. Krogfelt and Edouard Bingen and François-Xavier Weill and Eric S. Lander and Chad Nusbaum and Bruce W. Birren and Deborah T. Hung and William P. Hanage
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 2/2012, Volume 109, Issue 8, pp. 3065 - 3070
The degree to which molecular epidemiology reveals information about the sources and transmission patterns of an outbreak depends on the resolution of the... 
Infectious diseases | Sprouts | Hemolytic uremic syndrome | Surveillance | Escherichia coli | Genomes | Crop diversity | Sequencing | Epidemiology | Shipments | Enteroaggregative E. Coli | Enterohemorrhagic E. Coli | Shiga toxin | Food-borne outbreak | enteroaggregative E. coli | HEMOLYTIC-UREMIC SYNDROME | GERMANY | MULTIDISCIPLINARY SCIENCES | FRAMEWORK | food-borne outbreak | enterohemorrhagic E. coli | DNA-SEQUENCING DATA | FRANCE | Escherichia coli Infections - epidemiology | Escherichia coli Infections - genetics | Escherichia coli - genetics | Escherichia coli - isolation & purification | Humans | Escherichia coli Infections - microbiology | Europe - epidemiology | Polymorphism, Single Nucleotide - genetics | Disease Outbreaks - statistics & numerical data | Models, Genetic | Phylogeny | Epidemics | United States | Genomics | Physiological aspects | Genetic aspects | Research | Bacterial genetics | Life Sciences | Escherichia coli Infections | Disease Outbreaks | Europe | Santé publique et épidémiologie | Polymorphism, Single Nucleotide | Biological Sciences
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4. Full Text High quality draft genome sequence of Segniliparus rugosus CDC 945 T= (ATCC BAA-974 T)
by Earl, Ashlee M and Desjardins, Christopher A and Fitzgerald, Michael G and Arachchi, Harindra M and Zeng, Qiandong and Mehta, Teena and Griggs, Allison and Birren, Bruce W and Toney, Nadege C and Carr, Janice and Posey, James and Ray Butler, W
Standards in Genomic Sciences, ISSN 1944-3277, 2011, Volume 5, Issue 3, pp. 389 - 397
Genome sequencing | Human microbiome project | Segniliparaceae
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5. Full Text Closing gaps in the human genome using sequencing by synthesis
by Garber, Manuel and Zody, Michael C and Arachchi, Harindra M and Berlin, Aaron and Gnerre, Sante and Green, Lisa M and Lennon, Niall and Nusbaum, Chad and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Uppsala universitet
Genome Biology, ISSN 1474-7596, 06/2009, Volume 10, Issue 6, pp. R60 - R60
The most recent release of the finished human genome contains 260 euchromatic gaps (excluding chromosome Y). Recent work has helped explain a large number of... 
HIGH-DENSITY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | Cell Line | Chromosomes, Human, Pair 15 - genetics | Genome, Human | Sequence Analysis, DNA - methods | Base Sequence | Humans | Method | Medical and Health Sciences | MEDICINE | Medicin och hälsovetenskap | MEDICIN
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6. Full Text Analysis of the DNA sequence and duplication history of human chromosome 15
by Engels, Reinhard and Nicol, Robert and Kamal, Michael and DeArellano, Kurt and Rounsley, Steven and Sougnez, Carrie and Locke, Devin P and Arachchi, Harindra M and Munson, Glen and Mauceli, Evan and Bloom, Scott and Jaffe, David B and Abbasi, Nissa and Macdonald, Pendexter and Sharpe, Ted and Fleetwood, Peter and Dewar, Ken and Eichler, Evan E and Nusbaum, Chad and She, Xinwei and Fahey, Jessica and Hensley, Grace and Lui, Annie and Borowsky, Mark L and Lander, Eric S and Ratcliffe, Amber and Sneddon, Katherine M. B and DeCaprio, David and Naylor, Jerome W and Topham, Kerri and Nesbitt, Ryan and FitzGerald, Michael G and Wang, Shunguang and Chang, Jean L and Birren, Bruce W and Cuomo, Christina A and Dorris, Lester and Gearin, Gary and Madan, Anuradha and Cook, April and Vincent, Dascena and Johnson, Ericka and Kodira, Chinnappa D and Baradarani, Lida and Zimmer, Andrew R and Yang, Xiaoping and Birditt, Brian and Rowen, Lee and O'Leary, Sinéad B and Zody, Michael C and Young, Sarah K and Hood, Leroy and Dors, Monica and Qin, Shizhen and Abouelleil, Amr and Stone, Sabrina M and O'Neill, Keith and Friedman, Cynthia and Hall, Jennifer L and Bloom, Toby and Kaur, Amardeep and Burke, Jeremy and Kamat, Asha and Jones, Charlien and Stewart, Sandra and Butler, Jonathan and Garber, Manuel and Whittaker, Charles A and Madan, Anup
Nature, ISSN 0028-0836, 03/2006, Volume 440, Issue 7084, pp. 671 - 675
Here we present a finished sequence of human chromosome 15, together with a high-quality gene catalogue. As chromosome 15 is one of seven human chromosomes... 
DATABASE | MULTIDISCIPLINARY SCIENCES | DISEASE | SEGMENTAL DUPLICATIONS | GENERATION | HUMAN-GENOME | MAP | Gene Duplication | Multigene Family - genetics | Conserved Sequence - genetics | Synteny - genetics | Genes | Humans | Molecular Sequence Data | Phylogeny | Chromosomes, Human, Pair 15 - genetics | Sequence Analysis, DNA | Haplotypes - genetics | Animals | Macaca mulatta - genetics | Polymorphism, Genetic - genetics | Genome, Human | Evolution, Molecular | Genetic research | Chromosomes | Deoxyribonucleic acid | DNA | Genetik | Biological Sciences | Naturvetenskap | Biologiska vetenskaper | Cell and molecular biology | Genetics | Biology | Biologi | Natural Sciences | Cell- och molekylärbiologi
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7. Full Text Erratum: Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011 (Proceedings of the National Academy of Sciences of the United States of America (2012) 109, 8, (3065-3070) doi:10.1073/pnas.1121491109)
by Grad, Yonatan H and Lipsitch, Marc and Feldgarden, Michael and Arachchi, Harindra M and Cerqueira, Gustavo C and FitzGerald, Michael and Godfrey, Paul and Haas, Brian J and Murphy, Cheryl I and Russ, Carsten and Sykes, Sean and Walker, Bruce J and Wortman, Jennifer R and Young, Sarah and Zeng, Qiandong and Abouelleil, Amr and Bochicchio, James and Chauvin, Sara and DeSmet, Timothy and Gujja, Sharvari and McCowan, Caryn and Montmayeur, Anna and Steelman, Scott and Frimodt-Møller, Jakob and Petersen, Andreas M and Struve, Carsten and Krogfelt, Karen A and Bingen, Edouard and Weill, François-Xavier and Lander, Eric S and Nusbaum, Chad and Birren, Bruce W and Hung, Deborah T and Hanage, William P
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 04/2012, Volume 109, Issue 14, p. 5547
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8. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
by Yonatan H Grad and Marc Lipsitch and Michael Feldgarden and Harindra M Arachchi and Gustavo C Cerqueira and Michael FitzGerald and Paul Godfrey and Brian J Haas and Cheryl I Murphy and Carsten Russ and Sean Sykes and Bruce J Walker and Jennifer R Wortman and Sarah Young and Qiandong Zeng and Amr Abouelleil and James Bochicchio and Sara Chauvin and Timothy DeSmet and Sharvari Gujja and Caryn McCowan and Anna Montmayeur and Scott Steelman and Jakob Frimodt-Møller and Andreas M Petersen and Carsten Struve and Karen A Krogfelt and Edouard Bingen and François-Xavier Weill and Eric S Lander and Chad Nusbaum and Bruce W Birren and Deborah T Hung and William P Hanage
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 02/2012, Volume 109, Issue 8, p. 3065
The degree to which molecular epidemiology reveals information about the sources and transmission patterns of an outbreak depends on the resolution of the... 
Epidemics | E coli | Genomics | Mutation | Polymorphism
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9. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
by Grad, Yonatan H and Lipsitch, Marc and Feldgarden, Michael and Arachchi, Harindra M and Cerqueira, Gustavo C and FitzGerald, Michael and Godfrey, Paul and Haas, Brian J and Murphy, Cheryl I and Russ, Carsten and Sykes, Sean and Walker, Bruce J and Wortman, Jennifer R and Young, Sarah and Zeng, Qiandong and Abouelleil, Amr and Bochicchio, James and Chauvin, Sara and DeSmet, Timothy and Gujja, Sharvari and McCowan, Caryn and Montmayeur, Anna and Steelman, Scott and Frimodt-Moeller, Jakob and Petersen, Andreas M and Struve, Carsten and Krogfelt, Karen A and Bingen, Edouard and Weill, Francois-Xavier and Lander, Eric S and Nusbaum, Chad and Birren, Bruce W and Hung, Deborah T and Hanage, William P
Proceedings of the National Academy of Sciences, USA, ISSN 0027-8424, 02/2012, Volume 109, Issue 8, pp. 3065 - 3070
The degree to which molecular epidemiology reveals information about the sources and transmission patterns of an outbreak depends on the resolution of the... 
Disease transmission | Seeds | genomics | Mutation rates | Single-nucleotide polymorphism | Epidemiology
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10. Full Text High quality draft genome sequence of Segniliparus rugosus CDC 945T= (ATCC BAA-974T)
by Earl, Ashlee M and Desjardins, Christopher A and Fitzgerald, Michael G and Arachchi, Harindra M and Zeng, Qiandong and Mehta, Teena and Griggs, Allison and Birren, Bruce W and Toney, Nadege C and Carr, Janice and Posey, James and Butler, W. Ray
Standards in Genomic Sciences, ISSN 1944-3277, 12/2011, Volume 5, Issue 3, pp. 389 - 397
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11. Full Text High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T))
by Earl, AM and Desjardins, CA and Fitzgerald, MG and Arachchi, HM and Zeng, QD and Mehta, T and Griggs, A and Birren, BW and Toney, NC and Carr, J and Posey, J and Butler, WR
STANDARDS IN GENOMIC SCIENCES, ISSN 1944-3277, 2011, Volume 5, Issue 3, pp. 389 - 397
Segniliparus rugosus represents one of two species in the genus Segniliparus, the sole genus in the family Segniliparaceae. A unique and interesting feature of... 
SYSTEM | BACTERIA | PROJECT | RNA GENES | Human Microbiome Project | MICROBIOLOGY | Segniliparaceae | PROPOSAL | IDENTIFICATION | 16S | NOV | GENETICS & HEREDITY | genome sequencing | UPDATE | ACTINOBACTERIA
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12. Analysis of the DNA sequence and duplication history of human chromosome 15
by Zody, Michael C and Garber, Manuel and Sharpe, Ted and Young, Sarah K and Rowen, Lee and O'Neill, Keith and Whittaker, Charles A and Kamal, Michael and Chang, Jean L and Cuomo, Christina A and Dewar, Ken and FitzGerald, Michael G and Kodira, Chinnappa D and Madan, Anup and Qin, Shizhen and Yang, Xiaoping and Abbasi, Nissa and Abouelleil, Amr and Arachchi, Harindra M
Nature, ISSN 0028-0836, 03/2006, Volume 440, Issue 7084, pp. 671 - 675
Here we present a finished sequence of human chromosome 15, together with a high-quality gene catalogue. As chromosome 15 is one of seven human chromosomes... 
Journal Article
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13. Analysis of the DNA sequence and duplication history of human chromosome 15
by Zody, Michael C and Garber, Manuel and Sharpe, Ted and Young, Sarah K and Rowen, Lee and O'Neill, Keith and Whittaker, Charles A and Kamal, Michael and Chang, Jean L and Cuomo, Christina A and Dewar, Ken and FitzGerald, Michael G and Kodira, Chinnappa D and Madan, Anup and Qin, Shizhen and Yang, Xiaoping and Abbasi, Nissa and Abouelleil, Amr and Arachchi, Harindra M and Baradarani, Lida and Birditt, Brian and Bloom, Scott and Bloom, Toby and Borowsky, Mark L and Burke, Jeremy and Butler, Jonathan and Cook, April and DeArellano, Kurt and DeCaprio, David and Dorris III, Lester and Dors, Monica and Eichler, Evan E and Engels, Reinhard and Fahey, Jessica and Fleetwood, Peter and Friedman, Cynthia and Gearin, Gary and Hall, Jennifer L and Hensley, Grace and Johnson, Ericka and Jones, Charlien and Kamat, Asha and Kaur, Amardeep and Locke, Devin P and Madan, Anuradha and Munson, Glen and Jaffe, David B and Lui, Annie and Macdonald, Pendexter and Mauceli, Evan and Naylor, Jerome W and Nesbitt, Ryan and Nicol, Robert and O'Leary, Sinead B and Ratcliffe, Amber and Rounsley, Steven and She, Xinwei and Sneddon, Katherine MB and Stewart, Sandra and Sougnez, Carrie and Stone, Sabrina M and Topham, Kerri and Vincent, Dascena and Wang, Shunguang and Zimmer, Andrew R and Birren, Bruce W and Hood, Leroy and Lander, Eric S and Nusbaum, Chad
Nature, ISSN 0028-0836, 03/2006, Volume 440, Issue 7084, pp. 671 - 675
Here we present a finished sequence of human chromosome 15, together with a high-quality gene catalogue. As chromosome 15 is one of seven human chromosomes... 
Journal Article
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