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PLoS ONE, ISSN 1932-6203, 09/2018, Volume 13, Issue 9, p. e0203323
The emergence of carbapenem resistant Escherichia coli represents a serious public health concern. This study investigated the resistome, virulence, plasmids... 
INCF PLASMIDS | BLA(CTX-M-15) | MULTIDISCIPLINARY SCIENCES | CTX-M-15 | OXA-181 | BETA-LACTAMASES | IDENTIFICATION | VIRULENCE | EMERGENCE | KLEBSIELLA-PNEUMONIAE | ENTEROBACTERIACEAE | Escherichia coli Infections - drug therapy | Genes, Bacterial | Carbapenem-Resistant Enterobacteriaceae - isolation & purification | Tertiary Care Centers | Escherichia coli - drug effects | Humans | Bacterial Proteins - genetics | Escherichia coli Infections - microbiology | Phylogeny | Multilocus Sequence Typing | Electrophoresis, Gel, Pulsed-Field | Lebanon | Carbapenem-Resistant Enterobacteriaceae - genetics | Carbapenems - pharmacology | DNA, Bacterial - genetics | beta-Lactamases - genetics | Virulence - genetics | Escherichia coli - genetics | Escherichia coli - isolation & purification | Polymorphism, Single Nucleotide | beta-Lactam Resistance - genetics | Carbapenem-Resistant Enterobacteriaceae - drug effects | Serotyping | Drug resistance in microorganisms | Usage | Escherichia coli | Analysis | Genetic aspects | Dosage and administration | Nucleotide sequencing | Research | Virulence (Microbiology) | Gene expression | Carbapenems | DNA sequencing | Enzymes | Nucleotide sequence | Laboratories | Gel electrophoresis | Genomics | Virulence | Antimicrobial agents | Infections | Genomes | Genetic diversity | Single-nucleotide polymorphism | Drug resistance | Gene sequencing | Medical centres | E coli | Antibiotics | Plasmids | Phylogenetics | Bacteria | Electrophoresis | Multilocus sequence typing | Public health
Journal Article
Scientific reports, ISSN 2045-2322, 12/2019, Volume 9, Issue 1, pp. 531 - 12
Klebsiella pneumoniae is a Gram-negative organism and a major public health threat. In this study, we used whole-genome sequences to characterize 32... 
PLASMIDS | VIRULENCE FACTORS | MULTIDISCIPLINARY SCIENCES | ESCHERICHIA-COLI | SPECTRUM BETA-LACTAMASE | MECHANISMS | IDENTIFICATION | ANTIMICROBIAL RESISTANCE | NUCLEOTIDE-SEQUENCE | GENOME | ENTEROBACTERIACEAE
Journal Article
BMC Infectious Diseases, ISSN 1471-2334, 12/2018, Volume 18, Issue 1, pp. 710 - 9
BackgroundLebanon hosts a heterogeneous population coming from underdeveloped and developing countries, resulting in increasing incidences of tuberculosis over... 
SNPs | MDR-TB | WGS | End-TB | Mycobacterium tuberculosis | DIAGNOSIS | INFECTIOUS DISEASES | READ ALIGNMENT | GENOTYPE | DRUG-RESISTANCE | EMERGENCE | TRANSMISSION | EVOLUTION | OUTBREAKS | STRAIN | TOOL | Mycobacterium tuberculosis - classification | Humans | Middle Aged | Genotype | Male | Phylogeny | Tuberculosis, Multidrug-Resistant - epidemiology | Mycobacterium tuberculosis - isolation & purification | Minisatellite Repeats | Genetic Variation | Lebanon - epidemiology | Tuberculosis, Multidrug-Resistant - microbiology | Bacterial Typing Techniques | Adult | Female | Isoniazid - therapeutic use | Rifampin - therapeutic use | Polymorphism, Single Nucleotide | Mutation | Mycobacterium tuberculosis - genetics | Tuberculosis, Multidrug-Resistant - drug therapy | Drug resistance in microorganisms | Genetic aspects | Single nucleotide polymorphisms | Identification and classification | Health aspects | Laboratories | Spoligotyping | Insertion | Genomes | Drug resistance | Epidemiology | Clinical outcomes | Developing countries--LDCs | Gene sequencing | Quinolones | Heterogeneity | Acquired immune deficiency syndrome--AIDS | Human immunodeficiency virus--HIV | Phylogenetics | Population | Isoniazid | Automation | Streptomycin | Mortality | Antimicrobial agents | Genetic diversity | Zoonoses | Medical centres | Tuberculosis | Ethambutol | Determinants | Rifampin
Journal Article
BIOMED RESEARCH INTERNATIONAL, ISSN 2314-6133, 2018
Escherichia coli is responsible for a wide variety of community and hospital acquired extraintestinal infections, and the emergence of ESBL resistant isolates... 
MEDICINE, RESEARCH & EXPERIMENTAL | GENE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | QUINOLONE RESISTANCE | EXTRAINTESTINAL INFECTIONS | BETA-LACTAMASES | SPREAD | IDENTIFICATION | OXA-48 | LEBANON | KLEBSIELLA-PNEUMONIAE | ENTEROBACTERIACEAE
Journal Article
Journal of Infection in Developing Countries, ISSN 2036-6590, 08/2018, Volume 12, Issue 8, pp. 673 - 675
We describe an unusual case of a urinary tract infection (UTI) in a 52-year-old woman caused by Vibrio fluvialis. To our knowledge, this is the first report of... 
Vibrio fluvialis | Urinary tract infection | Vibrio species | INFECTIOUS DISEASES | PUBLIC-HEALTH | urinary tract infection
Journal Article
Journal of Infection in Developing Countries, ISSN 2036-6590, 03/2018, Volume 12, Issue 3, pp. 164 - 170
Introduction: It is not yet clear which antimicrobial agents should be used to treat the ominously increasing infections with carbapenem-resistant (CR)... 
Lebanon | K. pneumoniae | In vitro testing | Antimicrobial resistance | Carbapenem-resistance | E. coli | MORTALITY | INFECTIOUS DISEASES | MULTIDRUG-RESISTANT | INFECTIONS | BACTERIA | COMBINATION THERAPY | in vitro testing | GRAM-NEGATIVE PATHOGENS | TIGECYCLINE | PANDRUG-RESISTANT | antimicrobial resistance | FOSFOMYCIN | ENTEROBACTERIACEAE
Journal Article
FRONTIERS IN MICROBIOLOGY, ISSN 1664-302X, 04/2019, Volume 10, p. 933
Background: Carbapenem-resistant Gram-negative bacteria are a major clinical concern as they cause virtually untreatable infections since carbapenems are among... 
PREVALENT OXA CARBAPENEMASES | COMBINATION THERAPY | ESCHERICHIA-COLI | Avibactam | MICROBIOLOGY | NDM-1 | calcium-EDTA | MURINE MODEL | Relebactam | carbapenem | IMIPENEM | antimicrobial resistance | BETA-LACTAMASE | PENICILLIN-BINDING PROTEINS | OXA-48 | KLEBSIELLA-PNEUMONIAE | KPC
Journal Article
JOURNAL OF INFECTION IN DEVELOPING COUNTRIES, ISSN 1972-2680, 07/2019, Volume 13, Issue 7, pp. 612 - 618
Introduction: Infection with non-tuberculosis mycobacteria (NTM) has been on the rise globally causing a wide spectrum of respiratory and extrapulmonary... 
ANTIMICROBIAL SUSCEPTIBILITY | STRAINS | INFECTIOUS DISEASES | TUBERCULOSIS | Lebanon | atypical mycobacteria | Mycobacterium simiae | antimicrobial resistance | Nontuberculous mycobacteria | DISEASE | DRUG SUSCEPTIBILITY | INFECTION | SIMIAE | EPIDEMIOLOGY | CLINICAL-SIGNIFICANCE
Journal Article
International Journal of Infectious Diseases, ISSN 1201-9712, 2013, Volume 19, Issue 1, pp. 33 - 38
Summary Objectives The occurrence and dissemination of methicillin-resistant Staphylococcus aureus (MRSA) in healthcare settings and the community and its risk... 
Infectious Disease | Pulmonary/Respiratory | PFGE | ST80-MRSA-IV | SCCmec | spa typing | MLST | Staphylococcus aureus | Spa typing | STRAINS | INFECTIOUS DISEASES | VIRULENCE DETERMINANT | SKIN INFECTIONS | MULTIPLEX PCR ASSAY | KUWAIT HOSPITALS | COMMUNITY | PANTON-VALENTINE LEUKOCIDIN | GENES | FIELD GEL-ELECTROPHORESIS | EPIDEMIOLOGY | Humans | Methicillin-Resistant Staphylococcus aureus - classification | Male | DNA, Bacterial - chemistry | Multilocus Sequence Typing | Microbial Sensitivity Tests | Lebanon - epidemiology | Penicillin-Binding Proteins | Bacterial Toxins | Bacterial Typing Techniques | Female | Staphylococcal Infections - microbiology | Methicillin-Resistant Staphylococcus aureus - genetics | Staphylococcus aureus - genetics | Staphylococcus aureus - isolation & purification | Methicillin-Resistant Staphylococcus aureus - drug effects | Bacterial Proteins - genetics | Genotype | Antigens, Bacterial | Electrophoresis, Gel, Pulsed-Field | Leukocidins | Virulence Factors | DNA, Bacterial - genetics | Staphylococcal Infections - epidemiology | Exotoxins | Molecular Epidemiology | Staphylococcus aureus - classification | Anti-Bacterial Agents - pharmacology | Methicillin-Resistant Staphylococcus aureus - isolation & purification | Staphylococcus aureus - drug effects | Cluster Analysis | Cross infection | Nosocomial infections | Analysis | Staphylococcus aureus infections | Hospitals
Journal Article
Journal of Infection and Public Health, ISSN 1876-0341, 09/2019, Volume 12, Issue 5, pp. 712 - 713
Infections with non-O1 non-O139 strains have been reported to affect different extra intestinal sites including the urinary tract infection. We report the... 
Lebanon | Vibrio albensis | Urinary tract infection | Vibrio species | INFECTIOUS DISEASES | PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH | Case studies | Causes of | Urinary tract infections | Vibrio infections
Journal Article
International Journal of Medical Microbiology, ISSN 1438-4221, 04/2018, Volume 308, Issue 3, pp. 358 - 363
( ) is the main cause for nosocomial diarrhoea in industrialised nations. Epidemiologic data on the pathogen’s occurrence in other world regions are still... 
Middle East | Prevalence | MLST | Epidemiology | BI/NAP1/027 | Distribution | STRAINS | REDUCED SUSCEPTIBILITY | INFECTIONS | MICROBIOLOGY | KOREA | ANTIMICROBIAL RESISTANCE | EMERGENCE | VIROLOGY
Journal Article
International Journal of Tuberculosis and Lung Disease, ISSN 1027-3719, 12/2011, Volume 15, Issue 12, pp. 1688 - 1690
A total of 103 Lebanese tuberculosis (TB) cases and 38 controls without TB were studied for the killer cell immunoglobulin-like receptors (KIR) genotypic... 
Tuberculosis | Genotyping | KIR | Lebanese | GENOTYPES | INFECTIOUS DISEASES | RESPIRATORY SYSTEM | genotyping | tuberculosis | KILLER | Haplotypes | Tuberculosis - epidemiology | Receptors, KIR2DL3 - genetics | Receptors, KIR - genetics | Gene Frequency | Humans | Male | Case-Control Studies | Lebanon | Tuberculosis - genetics | Polymerase Chain Reaction | Adult | Female
Journal Article