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Theoretical Population Biology, ISSN 0040-5809, 10/2019, Volume 129, pp. 68 - 80
Advances in structural biology of aminoacyl-tRNA synthetases (aaRSs) have revealed incredible diversity in how aaRSs bind their tRNA substrates. The causes of... 
Hamming code | Modifier model | Rugged landscapes | Interaction network | Anti-determinants | SIGN EPISTASIS | COEVOLUTION THEORY | YEAST | EVOLUTIONARY BIOLOGY | GENETIC-CODE | ORIGIN | EVOLUTION | BINARY-CODES | MUTATION | GENETICS & HEREDITY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | ECOLOGY | ERROR | HISTORY
Journal Article
by Clark, Andrew G and Eisen, Michael B and Smith, Douglas R and Bergman, Casey M and Oliver, Brian and Markow, Therese A and Kaufman, Thomas C and Kellis, Manolis and Gelbart, William and Iyer, Venky N and Pollard, Daniel A and Sackton, Timothy B and Larracuente, Amanda M and Singh, Nadia D and Abad, Jose P and Abt, Dawn N and Adryan, Boris and Aguade, Montserrat and Akashi, Hiroshi and Anderson, Wyatt W and Aquadro, Charles F and Ardell, David H and Arguello, Roman and Artieri, Carlo G and Barbash, Daniel A and Barker, Daniel and Barsanti, Paolo and Batterham, Phil and Batzoglou, Serafim and Begun, Dave and Bhutkar, Arjun and Blanco, Enrico and Bosak, Stephanie A and Bradley, Robert K and Brand, Adrianne D and Brent, Michael R and Brooks, Angela N and Brown, Randall H and Butlin, Roger K and Caggese, Corrado and Calvi, Brian R and Bernardo De Carvalho, A and Caspi, Anat and Castrezana, Sergio and Celniker, Susan E and Chang, Jean L and Chapple, Charles and Chatterji, Sourav and Chinwalla, Asif and Civetta, Alberto and Clifton, Sandra W and Comeron, Josep M and Costello, James C and Coyne, Jerry A and Daub, Jennifer and David, Robert G and Delcher, Arthur L and Delehaunty, Kim and Do, Chuong B and Ebling, Heather and Edwards, Kevin and Eickbush, Thomas and Evans, Jay D and Filipski, Alan and Findeiß, Sven and Freyhult, Eva and Fulton, Lucinda and Fulton, Robert and Garcia, Ana C. L and Gardiner, Anastasia and Garfield, David A and Garvin, Barry E and Gibson, Greg and Gilbert, Don and Gnerre, Sante and Godfrey, Jennifer and Good, Robert and Gotea, Valer and Gravely, Brenton and Greenberg, Anthony J and Griffiths-Jones, Sam and Gross, Samuel and Guigo, Roderic and Gustafson, Erik A and Haerty, Wilfried and Hahn, Matthew W and Halligan, Daniel L and Halpern, Aaron L and Halter, Gillian M and Han, Mira V and Heger, Andreas and Hillier, LaDeana and Hinrichs, Angie S and Holmes, Ian and Hoskins, Roger A and Hubisz, Melissa J and Hultmark, Dan and Huntley, Melanie A and Jaffe, David B and Jagadeeshan, Santosh and ... and Drosophila 12 Genomes Consor and Broad Inst Whole Genome Ass and Broad Inst Genome Sequencing and Drosophila 12 Genomes Consortium and Medicinska fakulteten and Umeå centrum för molekylär patogenes (UCMP) (Medicinska fakulteten) and Umeå universitet
Nature, ISSN 0028-0836, 11/2007, Volume 450, Issue 7167, pp. 203 - 218
Journal Article
BMC genomics, 12/2016, Volume 17, Issue 1, p. 1003
While the CCA sequence at the mature 3' end of tRNAs is conserved and critical for translational function, a genetic template for this sequence is not always... 
RNA Precursors - chemistry | Genes, Bacterial | RNA, Transfer, Met - chemistry | Base Pairing | Base Sequence | Genes, Archaeal | RNA, Transfer, Met - metabolism | Databases, Genetic | RNA Precursors - metabolism | Archaea - genetics | Anticodon | Bacteria - genetics
Journal Article
PLoS Computational Biology, ISSN 1553-734X, 02/2014, Volume 10, Issue 2
  Molecular phylogenetics and phylogenomics are subject to noise from horizontal gene transfer (HGT) and bias from convergence in macromolecular compositions.... 
Phylogenetics | Evolution | Genomics | Bias | Genes
Journal Article
05/2013
Phylogenomic analyses are subject to bias from compositional convergence and noise from horizontal gene transfer (HGT). Compositional convergence is a likely... 
Quantitative Biology - Populations and Evolution
Journal Article
Theoretical population biology, 04/2019
Advances in structural biology of aminoacyl-tRNA synthetases (aaRSs) have revealed incredible diversity in how aaRSs bind their tRNA substrates. The causes of... 
Journal Article
BMC Genomics, ISSN 1471-2164, 12/2016, Volume 17, Issue 1
Background: While the CCA sequence at the mature 3' end of tRNAs is conserved and critical for translational function, a genetic template for this sequence is... 
CCA | Initiator tRNA | Bacteria | ESCHERICHIA-COLI | QUALITY-CONTROL | TRANSLATION | PROTEIN-SYNTHESIS | ADDING ENZYME | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ANNOTATION | IN-VIVO | GENETICS & HEREDITY | INTERACTIVE TREE | SYNTHETASE | CODON USAGE | Research | Genetic transcription | Bacterial genetics | Transfer RNA
Journal Article
FEBS Letters, ISSN 0014-5793, 2010, Volume 584, Issue 2, pp. 325 - 333
Journal Article
Proteins, ISSN 1097-0134, 2009, Volume 77, Issue 3, p. 499
Protein structures change during evolution in response to mutations. Here, we analyze the mapping between sequence and structure in a set of structurally... 
protein structure | secondary structure | Biological Sciences | Naturvetenskap | accessibility | Biologiska vetenskaper | RMSD | Biology | Biologi | Natural Sciences | evolution | residue contacts
Journal Article
BMC Bioinformatics, ISSN 1471-2105, 08/2009, Volume 10, p. 271
Promoter identification is a first step in the quest to explain gene regulation in bacteria. It has been demonstrated that the initiation of bacterial... 
Usage | Promoters (Genetics) | Markov processes | Chlamydia trachomatis | Genetic aspects | Research | Genetic regulation
Journal Article