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Proceedings of the National Academy of Sciences, ISSN 0027-8424, 11/2015, Volume 112, Issue 47, pp. 14734 - 14739
Journal Article
BMC BIOINFORMATICS, ISSN 1471-2105, 08/2019, Volume 20, Issue 1, pp. 440 - 14
BackgroundWith every new genome that is sequenced, thousands of species-specific genes (orphans) are found, some originating from ultra-rapid mutations of... 
Orphan | DE-NOVO | de novo | Synteny | BIOCHEMICAL RESEARCH METHODS | IDENTIFICATION | And RNA-Seq | ORIGIN | QQS | EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Software | Genome | PROTEINS | BINDING | UNCOVER | RNA sequencing | Arabidopsis thaliana | Algorithms | Analysis | Genes | Genomics | Genomes | Genetic aspects | Queries | Divergence | Species classification | Homology | Perturbation | Mutation | Gene mapping | Species
Journal Article
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 07/2013, Volume 30, Issue 7, pp. 1713 - 1719
Journal Article
Bioinformatics, ISSN 1367-4803, 10/2019, Volume 35, Issue 19, pp. 3617 - 3627
Abstract Motivation The goal of phylostratigraphy is to infer the evolutionary origin of each gene in an organism. This is done by searching for homologs... 
DE-NOVO GENES | ORIGINS | EVOLUTION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | PATTERNS | HOURGLASS | UNCOVER
Journal Article
Plant Science, ISSN 0168-9452, 02/2018, Volume 267, pp. 32 - 47
•Tips, tools, and pitfalls in accessing and harvesting knowledge from public datasets.•Case study using meta-analysis: exploring the behavior and function of... 
Metadata | Metabolomics | Orphan genes | Transcriptomics | Omics | Meta-analysis | NCBI GEO ARCHIVE | ARRAYEXPRESS | BIOCHEMISTRY & MOLECULAR BIOLOGY | MAIZE GENETICS | IDENTIFICATION | PLANT SCIENCES | ENCYCLOPEDIA | GENOMICS | EVOLUTION | GENES | DNA ELEMENTS | EXPRESSION | RNA sequencing | Case studies | Orphans | RNA | Genes | Genomics | Gene expression | Cells
Journal Article
Molecular Biology and Evolution, ISSN 0737-4038, 07/2013, Volume 30, Issue 7, p. 1713
  DIVERGE is a software system for phylogeny-based analyses of protein family evolution and functional divergence. It provides a suite of statistical tools for... 
Proteins | Genes | Phylogenetics | Amino acids | Software
Journal Article
BMC genomics, ISSN 1471-2164, 2015, Volume 16, Issue 3, pp. S9 - S9
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 11/2015, Volume 112, Issue 47, p. 14734
  The allocation of carbon and nitrogen resources to the synthesis of plant proteins, carbohydrates, and lipids is complex and under the control of many genes;... 
Proteins | Carbohydrates | Soybeans | Nitrogen dioxide | Photosynthesis | Carbon
Journal Article
Proceedings of the National Academy of Sciences, USA, ISSN 0027-8424, 11/2015, Volume 112, Issue 47, pp. 14734 - 14734
The allocation of carbon and nitrogen resources to the synthesis of plant proteins, carbohydrates, and lipids is complex and under the control of many genes;... 
Journal Article
Genome Biology and Evolution, ISSN 1759-6653, 2013, Volume 5, Issue 9, pp. 1746 - 1753
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 11/2015, Volume 112, Issue 47, pp. 14734 - 14739
The allocation of carbon and nitrogen resources to the synthesis of plant proteins, carbohydrates, and lipids is complex and under the control of many genes;... 
Journal Article
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