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PLoS Biology, ISSN 1544-9173, 07/2012, Volume 10, Issue 7, pp. 11 - e1001364
Journal Article
Journal Article
Development (Cambridge), ISSN 0950-1991, 03/2014, Volume 141, Issue 6, pp. 1381 - 1391
How signaling gradients supply positional information in a field of moving cells is an unsolved question in patterning and morphogenesis. Here, we ask how a... 
Signal gradient | Wnt signaling | Embryonic elongation | Fgf signaling | Segmentation clock | Time-lapse microscopy | WAVE-FRONT ACTIVITY | SIGNALING PATHWAYS | MOUSE EMBRYOS | NOTCH | DEVELOPMENTAL BIOLOGY | BOUNDARY FORMATION | GENE-EXPRESSION | BODY FORMATION | PRESOMITIC MESODERM | VERTEBRATE SEGMENTATION | T-Box Domain Proteins - physiology | Fibroblast Growth Factors - genetics | Wnt Signaling Pathway - physiology | Zebrafish - embryology | Intercellular Signaling Peptides and Proteins - physiology | Somites - embryology | Wnt Proteins - genetics | Gene Expression Regulation, Developmental | Fibroblast Growth Factors - physiology | Somites - metabolism | Basic Helix-Loop-Helix Transcription Factors - physiology | Basic Helix-Loop-Helix Transcription Factors - genetics | Animals, Genetically Modified | Zebrafish Proteins - antagonists & inhibitors | Intercellular Signaling Peptides and Proteins - genetics | Heat-Shock Response - physiology | T-Box Domain Proteins - genetics | Zebrafish - genetics | Zebrafish Proteins - physiology | Body Patterning - physiology | Heat-Shock Response - genetics | Animals | Wnt Signaling Pathway - genetics | Models, Biological | Zebrafish - metabolism | Wnt Proteins - physiology | Zebrafish Proteins - genetics | Wnt Proteins - antagonists & inhibitors | Body Patterning - genetics | Index Medicus | Life Sciences | Genetics
Journal Article
Physical Review Letters, ISSN 0031-9007, 04/2014, Volume 112, Issue 17, pp. 174101 - 174101
In systems of coupled oscillators, the effects of complex signaling can be captured by time delays and phase shifts. Here, we show how time delays and phase... 
PHYSICS, MULTIDISCIPLINARY | OSCILLATORS | MUTUAL ENTRAINMENT | SYSTEMS | KURAMOTO MODEL | TIME-DELAY | VERTEBRATE SEGMENTATION | CLOCK | LAMBERT-W-FUNCTION | Models, Theoretical | Signal Transduction | Phase Transition | Index Medicus | Phase shift | Dynamics | Synchronism | Joining | Time delay | Synchronization | Dynamical systems | Oscillators | Physics - Adaptation and Self-Organizing Systems
Journal Article
Current Biology, ISSN 0960-9822, 2010, Volume 20, Issue 14, pp. 1254 - 1258
Background: Coupled biological oscillators can tick with the same period. How this collective period is established is a key question in understanding... 
DEVBIO
Journal Article
Physical Review Letters, ISSN 0031-9007, 05/2012, Volume 108, Issue 20, pp. 204101 - 204101
We study the effects of delayed coupling on timing and pattern formation in spatially extended systems of dynamic oscillators. Starting from a discrete lattice... 
PATTERN-FORMATION | PHYSICS, MULTIDISCIPLINARY | SEGMENTATION CLOCK | DYNAMICS | SYSTEMS | NETWORKS | LIMIT-CYCLE OSCILLATORS | SOMITOGENESIS | TIME-DELAY | VERTEBRATE SEGMENTATION
Journal Article
Cell, ISSN 0092-8674, 05/2011, Volume 145, Issue 5, pp. 800 - 800.e1
Journal Article
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, ISSN 1539-3755, 03/2013, Volume 87, Issue 3
We study the transient synchronization dynamics of locally coupled phase oscillators moving on a one-dimensional lattice. Analysis of spatial phase correlation... 
BIODIVERSITY | ROCK-PAPER-SCISSORS | SYNCHRONIZATION | PHYSICS, FLUIDS & PLASMAS | SEGMENTATION | POPULATIONS | NETWORKS | MODEL | PHYSICS, MATHEMATICAL | PROMOTES
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 12/2018, Volume 46, Issue 22, pp. 11910 - 11926
Abstract The principal route for dissemination of antibiotic resistance genes is conjugation by which a conjugative DNA element is transferred from a donor to... 
RESTRICTION-MODIFICATION SYSTEMS | ARC REPRESSOR | PROTEIN | MESSENGER-RNA | SOS INHIBITOR | BIOCHEMISTRY & MOLECULAR BIOLOGY | ESCHERICHIA-COLI | TRANSCRIPTION | PSIB | PROMOTER | REGION | Index Medicus | Molecular Biology
Journal Article
Journal Article
Journal Article
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, ISSN 1539-3755, 12/2004, Volume 70, Issue 6, pp. 1 - 61607
We present a modified version of the one-dimensional sine-Gordon model that exhibits a thermodynamic, roughening phase transition, in analogy with the... 
SURFACE | DISORDERED SUBSTRATE | STATIC PROPERTIES | PHASE | PHYSICS, MATHEMATICAL | PHYSICS, FLUIDS & PLASMAS
Journal Article
Physical Biology, ISSN 1478-3967, 06/2012, Volume 9, Issue 3, pp. 036006 - 036006
Cell movement and intercellular signaling occur simultaneously during the development of tissues, but little is known about how movement affects signaling.... 
ZEBRAFISH | BOUNDARIES | BIOPHYSICS | SEGMENTATION CLOCK | ELONGATION | NOTCH | SOMITOGENESIS | SIMULATION | VERTEBRATE SEGMENTATION | OSCILLATOR | EXPRESSION | Morphogenesis | Animals | Signal Transduction | Models, Biological | Computer Simulation | Humans | Cell Communication | Biological Clocks | Cell Movement | Index Medicus
Journal Article
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, ISSN 1063-651X, 04/2003, Volume 67, Issue 4, pp. 461081 - 461086
We study the one-dimensional sine-Gordon model as a prototype of roughening phenomena. In spite of the fact that it has been recently proven that this model... 
CHAIN | STATISTICAL-MECHANICS | MODELS | PHYSICS, FLUIDS & PLASMAS | GROWTH | OVERDAMPED SOLITON MOTION | INTERFACES | DYNAMICS | NUCLEATION THEORY | PHYSICS, MATHEMATICAL
Journal Article