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BMC Genomics, ISSN 1471-2164, 11/2011, Volume 12, Issue 1, pp. 574 - 574
Journal Article
Nature genetics, ISSN 1546-1718, 2017, Volume 49, Issue 6, pp. 866 - 875
... Kwon [9]; Cem Meydan [10]; Javier Perales-Paton [11]; Arora Arshi [12]; Mithat Gonen [12]; Christopher Famulare [13]; Minal Patel [13]; Elisabeth Paietta [14... 
GENE-EXPRESSION | DETERMINANT | FATE | GENETICS & HEREDITY | HIERARCHY | Leukemia, Biphenotypic, Acute - pathology | Myeloid Progenitor Cells - metabolism | RNA-Binding Proteins - genetics | Cell Survival | Humans | Leukemia, Myeloid - genetics | Mice, Inbred C57BL | Heterogeneous-Nuclear Ribonucleoproteins - metabolism | Hematopoiesis - genetics | Myeloid Progenitor Cells - pathology | Gene Expression Regulation, Leukemic | Homeodomain Proteins - genetics | Mice, Knockout | Heterogeneous-Nuclear Ribonucleoproteins - genetics | Leukemia, Myeloid - pathology | Xenograft Model Antitumor Assays | Animals | Female | RNA, Small Interfering | Leukemia, Biphenotypic, Acute - genetics | RNA-Binding Proteins - metabolism | Care and treatment | Myelocytic leukemia | Stem cells | Development and progression | Genetic aspects | Nonlymphoid leukemia | Binding proteins | Gene expression | Health aspects | Profiling | Transplants & implants | Transcription | Pathogenesis | Leukemia | Genes | Oncology | Biology | Proteins | Functional anatomy | Bone marrow | Genetics | Binding | Medical research | Hematology | Research & development--R&D | Myeloid leukemia | Biophysics | Ribonucleic acid--RNA | Medicine | Screening | Depletion | Medical prognosis | Leukemogenesis | Differentiation | Cancer | Apoptosis | Cell and Molecular Biology | Basic Medicine | Medical and Health Sciences | Medicin och hälsovetenskap | Cell- och molekylärbiologi | Medicinska och farmaceutiska grundvetenskaper
Journal Article
Nature communications, ISSN 2041-1723, 2019, Volume 10, Issue 1, pp. 5506 - 9
...ARTICLE Using somatic variant richness to mine signals from rare variants in the cancer genome Saptarshi Chakraborty 1, Arshi Arora1, Colin B. Begg 1... 
SAMPLE | NUMBER | MULTIDISCIPLINARY SCIENCES | Organ Specificity - genetics | Genetic Predisposition to Disease | Reproducibility of Results | Neoplasms - genetics | Humans | Probability | Phylogeny | Genome, Human | Mutation - genetics | Statistical analysis | Computer applications | Linguistics | Ecological monitoring | Genomes | Very Low Frequencies | Gene sequencing | Cancer
Journal Article
by Farshidfar, Farshad and Zheng, Siyuan and Gingras, Marie-Claude and Newton, Yulia and Shih, Juliann and Robertson, A. Gordon and Hinoue, Toshinori and Hoadley, Katherine A and Gibb, Ewan A and Roszik, Jason and Covington, Kyle R and Wu, Chia-Chin and Shinbrot, Eve and Stransky, Nicolas and Hegde, Apurva and Yang, Ju Dong and Reznik, Ed and Sadeghi, Sara and Pedamallu, Chandra Sekhar and Ojesina, Akinyemi I and Hess, Julian M and Auman, J. Todd and Rhie, Suhn K and Bowlby, Reanne and Borad, Mitesh J and Zhu, Andrew X and Stuart, Josh M and Sander, Chris and Akbani, Rehan and Cherniack, Andrew D and Deshpande, Vikram and Mounajjed, Taofic and Foo, Wai Chin and Torbenson, Michael S and Kleiner, David E and Laird, Peter W and Wheeler, David A and McRee, Autumn J and Bathe, Oliver F and Andersen, Jesper B and Bardeesy, Nabeel and Roberts, Lewis R and Kwong, Lawrence N and Allotey, Loretta K and Ally, Adrian and Alvaro, Domenico and Appelbaum, Elizabeth L and Arora, Arshi and Balasundaram, Miruna and Balu, Saianand and Baylin, Stephen B and Beroukhim, Rameen and Berrios, Mario and Bodenheimer, Tom and Boice, Lori and Bootwalla, Moiz S and Bowen, Jay and Bragazzi, Maria Consiglia and Brooks, Denise and Cardinale, Vincenzo and Carlsen, Rebecca and Carpino, Guido and Carvalho, Andre L and Chaiteerakij, Roongruedee and Chandan, Vishal C and Chin, Lynda and Cho, Juok and Choe, Gina and Chuah, Eric and Chudamani, Sudha and Cibulskis, Carrie and Cordes, Matthew G and Crain, Daniel and Curley, Erin and De Rose, Agostino Maria and Defreitas, Timothy and Demchok, John A and Dhalla, Noreen and Ding, Li and Evason, Kimberley and Felau, Ina and Ferguson, Martin L and Franchitto, Antonio and Frazer, Scott and Fronick, Catrina C and Fulton, Lucinda A and Fulton, Robert S and Gabriel, Stacey B and Gardner, Johanna and Gastier-Foster, Julie M and Gaudio, Eugenio and Gehlenborg, Nils and Genovese, Giannicola and Gerken, Mark and Getz, Gad and Giama, Nasra H and Gibbs, Richard A and Giuliante, Felice and Grazi, Gian Luca and Hayes, D. Neil and ... and The Cancer Genome Atlas Network and Canc Genome Atlas Network and Cancer Genome Atlas Network
Cell reports (Cambridge), ISSN 2211-1247, 2017, Volume 19, Issue 13, pp. 2878 - 2880
Cholangiocarcinoma (CCA) is an aggressive malignancy of the bile ducts, with poor prognosis and limited treatment options. Here, we describe the integrated... 
CELL BIOLOGY
Journal Article
by Kim, Jihun and Bowlby, Reanne and Mungall, Andrew J and Robertson, A. Gordon and Odze, Robert D and Cherniack, Andrew D and Shih, Juliann and Pedamallu, Chandra Sekhar and Cibulskis, Carrie and Dunford, Andrew and Meier, Samuel R and Kim, Jaegil and Raphael, J and Wu, Hsin-Ta and Wong, Alexandra M and Willis, Joseph E and Bass, Adam J and Derks, Sarah and Garman, Katherine and McCall, Shannon J and Wiznerowicz, MacIej and Pantazi, Angeliki and Parfenov, Michael and Thorsson, Vésteinn and Shmulevich, Ilya and Dhankani, Varsha and Miller, Michael and Sakai, Ku Leuven Ryo and Wang, Kenneth and Schultz, Nikolaus and Shen, Ronglai and Arora, Arshi and Weinhold, Nils and Sánchez-Vega, Francisco and Kelsen, David P and Zhang, Julia and Felau, Ina and Demchok, John and Rabkin, Charles S and Camargo, M. Constanza and Zenklusen, Jean Claude and Bowen, Jay and Leraas, Kristen and Lichtenberg, Tara M and Curtis, Christina and Seoane, Jose A and Ojesina, Akinyemi I and Beer, David G and Gulley, Margaret L and Pennathur, Arjun and Luketich, James D and Zhou, Zhongren and Weisenberger, Daniel J and Akbani, Rehan and Lee, Ju-Seog and Liu, Wenbin and Mills, Gordon B and Zhang, Wei and Reid, Brian J and Hinoue, Toshinori and Laird, Peter W and Shen, Hui and Piazuelo, M. Blanca and Schneider, Barbara G and McLellan, Michael and Taylor-Weiner, Amaro and Lawrence, Michael and Cibulskis, Kristian and Stewart, Chip and Getz, Gad and Lander, Eric and Gabriel, Stacey B and DIng, Li and McLellan, Michael D and Miller, Christopher A and Appelbaum, Elizabeth L and Cordes, Matthew G and Fronick, Catrina C and Fulton, Lucinda A and Mardis, Elaine R and Wilson, Richard K and Schmidt, Heather K and Fulton, Robert S and Ally, Adrian and Balasundaram, Miruna and Carlsen, Rebecca and Chuah, Eric and Dhalla, Noreen and Holt, Robert A and Jones, Steven J. M and Kasaian, Katayoon and Brooks, Denise and Li, Haiyan I and Ma, Yussanne and Marra, Marco A and Mayo, Michael and Moore, Richard A and Mungall, Karen L and Schein, Jacqueline E and Sipahimalani, Payal and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Data Coordination Center: CSRA Inc and Duke University and Ribeirão Preto Medical School and Israelitisches Krankenhaus Hamburg and Project Team: National Institutes of Health and Tissue Source Sites: Analytic Biologic Services and Nationwide Children’s Hospital and Greater Poland Cancer Centre and Brown University and University of Michigan and Mayo Clinic and Broad Institute and Keimyung University School of Medicine and Asan Medical Center and Barretos Cancer Hospital and University of Alabama and Indiana University School of Medicine and Invidumed and National Cancer Center Goyang and Yonsei University College of Medicine and Vanderbilt University and University of North Carolina at Chapel Hill and Cureline and Cancer Genome Atlas Research Network and Institute of Oncology of Moldova and University of Pittsburgh School of Medicine and University of Pittsburgh and Genome Characterization Centers: BC Cancer Agency and Analysis Working Group: Asan University and University of Texas MD Anderson Cancer Center and Case Western Reserve University and National Cancer Institute and Genome Data Analysis Centers: Broad Institute and St. Joseph’s Hospital &Medical Center and University of Southern California and Institute for Systems Biology and Ontario Tumour Bank and University of Washington and University of Rochester and Harvard Medical School and KU Leuven and Genome Sequencing Center: Broad Institute and Brigham and Women’s Hospital and Memorial Sloan Kettering Cancer Center and Disease Working Group: Duke University and Erasmus University and Christiana Care Health System and University of Kansas Medical Center and Research Institute at Nationwide Children’s Hospital and International Genomics Consortium and Tayside Tissue Bank and Peter MacCallum Cancer Centre and Pusan National University Medical School and Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University and BioreclamationIVT and Dana-Farber Cancer Institute and University of Southern California Epigenome Center and Stanford University and BC Cancer Agency and Chonnam National University Medical School and St. Petersburg Academic University and University of North Carolina and University of Dundee and Van Andel Research Institute and Washington University in St. Louis and Emory University and Washington University and University of California Santa Cruz and Biospecimen Core Resource: International Genomics Consortium and Asterand Bioscience and Botkin Municipal Clinic
Nature (London), ISSN 1476-4687, 2017, Volume 541, Issue 7636, pp. 169 - 175
Journal Article
by Ally, Adrian and Balasundaram, Miruna and Carlsen, Rebecca and Chuah, Eric and Clarke, Amanda and Dhalla, Noreen and Holt, Robert A and Jones, Steven J.M and Lee, Darlene and Ma, Yussanne and Marra, Marco A and Mayo, Michael and Moore, Richard A and Mungall, Andrew J and Schein, Jacqueline E and Sipahimalani, Payal and Tam, Angela and Thiessen, Nina and Cheung, Dorothy and Wong, Tina and Brooks, Denise and Robertson, A. Gordon and Bowlby, Reanne and Mungall, Karen and Sadeghi, Sara and Xi, Liu and Covington, Kyle and Shinbrot, Eve and Wheeler, David A and Gibbs, Richard A and Donehower, Lawrence A and Wang, Linghua and Bowen, Jay and Gastier-Foster, Julie M and Gerken, Mark and Helsel, Carmen and Leraas, Kristen M and Lichtenberg, Tara M and Ramirez, Nilsa C and Wise, Lisa and Zmuda, Erik and Gabriel, Stacey B and Meyerson, Matthew and Cibulskis, Carrie and Murray, Bradley A and Shih, Juliann and Beroukhim, Rameen and Cherniack, Andrew D and Schumacher, Steven E and Saksena, Gordon and Pedamallu, Chandra Sekhar and Chin, Lynda and Getz, Gad and Noble, Michael and Zhang, Hailei and Heiman, David and Cho, Juok and Gehlenborg, Nils and Voet, Douglas and Lin, Pei and Frazer, Scott and Defreitas, Timothy and Meier, Sam and Lawrence, Michael and Kim, Jaegil and Creighton, Chad J and Muzny, Donna and Doddapaneni, HarshaVardhan and Hu, Jianhong and Wang, Min and Morton, Donna and Korchina, Viktoriya and Han, Yi and Dinh, Huyen and Lewis, Lora and Bellair, Michelle and Liu, Xiuping and Santibanez, Jireh and Glenn, Robert and Lee, Sandra and Hale, Walker and Parker, Joel S and Wilkerson, Matthew D and Hayes, D. Neil and Reynolds, Sheila M and Shmulevich, Ilya and Zhang, Wei and Liu, Yuexin and Iype, Lisa and Makhlouf, Hala and Torbenson, Michael S and Kakar, Sanjay and Yeh, Matthew M and Jain, Dhanpat and Kleiner, David E and Dhanasekaran, Renumathy and El-Serag, Hashem B and Yim, Sun Young and Weinstein, John N and Mishra, Lopa and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network and Cancer Genome Atlas Research Network. Electronic address: wheeler@bcm.edu
Cell (Cambridge), ISSN 0092-8674, 2017, Volume 169, Issue 7, pp. 1327 - 1341.e23
Journal Article
Nature cell biology, ISSN 1476-4679, 2019, Volume 21, Issue 2, pp. 203 - 213
Drug-based strategies to overcome tumour resistance to radiotherapy (R-RT) remain limited by the single-agent toxicity of traditional radiosensitizers (for... 
SURVIVAL | HEAD | PIDDOSOME | DNA-DAMAGE | KINASE | PROLYL ISOMERASE PIN1 | SUPPRESSES | IONIZING-RADIATION | CANCER | P53 | CELL BIOLOGY | Neoplasms - metabolism | Interleukin-1 Receptor-Associated Kinases - metabolism | NIMA-Interacting Peptidylprolyl Isomerase - metabolism | Interleukin-1 Receptor-Associated Kinases - genetics | Humans | NIMA-Interacting Peptidylprolyl Isomerase - antagonists & inhibitors | Tumor Suppressor Protein p53 - genetics | MCF-7 Cells | Neoplasms - genetics | HEK293 Cells | Neoplasms - radiotherapy | Signal Transduction | HCT116 Cells | Radiation Tolerance - genetics | Zebrafish | NIMA-Interacting Peptidylprolyl Isomerase - genetics | Mice, SCID | Xenograft Model Antitumor Assays - methods | Mice, Knockout | Radiation Tolerance - drug effects | Animals | Interleukin-1 Receptor-Associated Kinases - antagonists & inhibitors | Cell Line, Tumor | Mice, Inbred NOD | HeLa Cells | Mutation | Care and treatment | Patient outcomes | Cytokine receptors | Toll-like receptors | Genetic aspects | Radiotherapy | Health aspects | Methods | Cancer | Radiosensitivity | Toxicity | p53 Protein | Interleukin | Interleukin 1 receptors | Pin1 protein | Caspase-2 | Proteins | Signal transduction | Ionizing radiation | Benzimidazole | Interleukin 1 | Immune system | IRAK protein | Peptidylprolyl isomerase | Immune response | TRAF6 protein | Caspase | Radiation therapy | Oxfendazole | Radiosensitizers | Inhibitors | Radiation tolerance | MyD88 protein | Tumors | Apoptosis | Index Medicus
Journal Article