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by Jiang, Yuxiang and Oron, Tal Ronnen and Clark, Wyatt T and Bankapur, Asma R and Anea, D', Daniel and Lepore, Rosalba and Funk, Christopher S and Kahanda, Indika and Verspoor, Karin M and Ben-Hur, Asa and Koo, Da Chen Emily and Penfold-Brown, Duncan and Shasha, Dennis and Youngs, Noah and Bonneau, Richard and Lin, Alexana and Sahraeian, Sayed M.E and Martelli, Pier Luigi and ti, Giuseppe and Casadio, Rita and Cao, Renzhi and Zhong, Zhaolong and Cheng, Jianlin and Altenhoff, Aian and Skunca, Nives and Dessimoz, Christophe and Dogan, Tunca and Hakala, Kai and Kaewphan, Suwisa and Mehryary, Farrokh and Salakoski, Tapio and Ginter, Filip and Fang, Hai and Smithers, Ben and Oates, Matt and Gough, Julian and Törönen, Petri and Koskinen, Patrik and Holm, Liisa and Chen, Ching Tai and Hsu, Wen Lian and Bryson, Kevin and Cozzetto, Domenico and Minneci, Federico and Jones, David T and Chapman, Samuel and BKC, Dukka and Khan, Ishita K and Kihara, Daisuke and Ofer, Dan and Rappoport, Nadav and Stern, Amos and Cibrian-Uhalte, Elena and Denny, Paul and Foulger, Rebecca E and Hieta, Reija and Legge, Duncan and Lovering, Ruth C and Magrane, Michele and Melidoni, Anna N and Mutowo-Meullenet, Prudence and Pichler, Klemens and Shypitsyna, Aleksana and Li, Biao and Zakeri, Pooya and ElShal, Sarah and Tranchevent, Léon Charles and Das, Sayoni and Dawson, Natalie L and Lee, David and Lees, Jonathan G and Sillitoe, Ian and Bhat, Prajwal and Nepusz, Tamás and Romero, Alfonso E and Sasidharan, Rajkumar and Yang, Haixuan and Paccanaro, Alberto and Gillis, Jesse and Sedeño-Cortés, Aiana E and Pavlidis, Paul and Feng, Shou and Cejuela, Juan M and Goldberg, Tatyana and Hamp, Tobias and Richter, Lothar and Salamov, Asaf and Gabaldon, Toni and Marcet-Houben, Marina and Supek, Fran and Gong, Qingtian and Ning, Wei and Zhou, Yuanpeng and Tian, Weidong and Falda, Marco and Fontana, Paolo and Lavezzo, Enrico and Toppo, Stefano and Ferrari, Carlo and Giollo, Manuel and ...
Genome Biology, ISSN 1474-7596, 2016, Volume 17, Issue 1, p. 184
Journal Article
BMC Structural Biology, ISSN 1472-6807, 2009, Volume 9, Issue 1, pp. 12 - 12
Background: Common structural biology methods (i.e., NMR and molecular dynamics) often produce ensembles of molecular structures. Consequently, averaging of 3D... 
ENSEMBLE | BIOPHYSICS | MODELS | PROTEIN-STRUCTURE | RECONSTRUCTION | ALGORITHM | TASSER | BACKBONE | FOLDS | STRUCTURE PREDICTION | GEOMETRY | Computational Biology - methods | Algorithms | Computer Simulation | Models, Molecular | Protein Conformation | Proteins - chemistry | Monte Carlo Method | Proteins | Three-dimensional display systems | Usage | Research | Structure
Journal Article
Molecular BioSystems, ISSN 1742-206X, 2016, Volume 12, Issue 8, pp. 2427 - 2435
Journal Article
Molecular BioSystems, ISSN 1742-206X, 07/2016, Volume 12, Issue 8, pp. 2427 - 2435
Protein hydroxylation is an emerging posttranslational modification involved in both normal cellular processes and a growing number of pathological states,... 
Journal Article
by Jiang, Yuxiang and Oron, Ronnen Tal and Clark, T Wyatt and Bankapur, R Asma and D’Andrea, Daniel and Lepore, Rosalba and Funk, S Christopher and Kahanda, Indika and Verspoor, M Karin and Ben-Hur, Asa and Koo, Emily Da Chen and Penfold-Brown, Duncan and Shasha, Dennis and Youngs, Noah and Bonneau, Richard and Lin, Alexandra and Sahraeian, E Sayed M and Martelli, Luigi Pier and Profiti, Giuseppe and Casadio, Rita and Cao, Renzhi and Zhong, Zhaolong and Cheng, Jianlin and Altenhoff, Adrian and Skunca, Nives and Dessimoz, Christophe and Dogan, Tunca and Hakala, Kai and Kaewphan, Suwisa and Mehryary, Farrokh and Salakoski, Tapio and Ginter, Filip and Fang, Hai and Smithers, Ben and Oates, Matt and Gough, Julian and Törönen, Petri and Koskinen, Patrik and Holm, Liisa and Chen, Ching-Tai and Hsu, Wen-Lian and Bryson, Kevin and Cozzetto, Domenico and Minneci, Federico and Jones, T David and Chapman, Samuel and BKC, Dukka and Khan, K Ishita and Kihara, Daisuke and Ofer, Dan and Rappoport, Nadav and Stern, Amos and Cibrian-Uhalte, Elena and Denny, Paul and Foulger, E Rebecca and Hieta, Reija and Legge, Duncan and Lovering, C Ruth and Magrane, Michele and Melidoni, N Anna and Mutowo-Meullenet, Prudence and Pichler, Klemens and Shypitsyna, Aleksandra and Li, Biao and Zakeri, Pooya and ElShal, Sarah and Tranchevent, Léon-Charles and Das, Sayoni and Dawson, L Natalie and Lee, David and Lees, G Jonathan and Sillitoe, Ian and Bhat, Prajwal and Nepusz, Tamás and Romero, E Alfonso and Sasidharan, Rajkumar and Yang, Haixuan and Paccanaro, Alberto and Gillis, Jesse and Sedeño-Cortés, E Adriana and Pavlidis, Paul and Feng, Shou and Cejuela, M Juan and Goldberg, Tatyana and Hamp, Tobias and Richter, Lothar and Salamov, Asaf and Gabaldon, Toni and Marcet-Houben, Marina and Supek, Fran and Gong, Qingtian and Ning, Wei and Zhou, Yuanpeng and Tian, Weidong and Falda, Marco and Fontana, Paolo and Lavezzo, Enrico and Toppo, Stefano and Ferrari, Carlo and Giollo, Manuel and ...
ISSN 1474-7596, 2016
Background: A major bottleneck in our understanding of the molecular underpinnings of life is the assignment of function to proteins. While molecular... 
disease gene prioritization | protein function prediction
Journal Article
Journal of Bioinformatics and Computational Biology, ISSN 0219-7200, 02/2006, Volume 4, Issue 1, pp. 19 - 42
With the advent of experimental technologies like chemical cross-linking, it has become possible to obtain distances between specific residues of a newly... 
Journal Article
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