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index medicus (20) 20
cell biology (12) 12
proteins (12) 12
vacuole (12) 12
autophagy (11) 11
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stress (8) 8
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phosphorylation (3) 3
physiological aspects (3) 3
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research (3) 3
saccharomyces cerevisiae - cytology (3) 3
saccharomyces cerevisiae - genetics (3) 3
saccharomyces cerevisiae proteins - genetics (3) 3
agricultural and biological sciences (2) 2
amino acid sequence (2) 2
aminopeptidase-i (2) 2
arabidopsis (2) 2
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autolysosome (2) 2
autophagosomes - metabolism (2) 2
autophagosomes - ultrastructure (2) 2
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autophagy-related protein 8 family (2) 2
autophagy-related proteins (2) 2
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basic research paper (2) 2
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1. Full Text Guidelines for the use and interpretation of assays for monitoring autophagy
by Klionsky, Daniel J and Abdalla, Fabio C and Abeliovich, Hagai and Abraham, Robert T and Acevedo-Arozena, Abraham and Adeli, Khosrow and Agholme, Lotta and Agnello, Maria and Agostinis, Patrizia and Aguirre-Ghiso, Julio A and Ahn, Hyung Jun and Ait-Mohamed, Ouardia and Ait-Si-Ali, Slimane and Akematsu, Takahiko and Akira, Shizuo and Al-Younes, Hesham M and Al-Zeer, Munir A and Albert, Matthew L and Albin, Roger L and Alegre-Abarrategui, Javier and Aleo, Maria Francesca and Alirezaei, Mehrdad and Almasan, Alexandru and Almonte-Becerril, Maylin and Amano, Atsuo and Amaravadi, Ravi K and Amarnath, Shoba and Amer, Amal O and Andrieu-Abadie, Nathalie and Anantharam, Vellareddy and Ann, David K and Anoopkumar-Dukie, Shailendra and Aoki, Hiroshi and Apostolova, Nadezda and Arancia, Giuseppe and Aris, John P and Asanuma, Katsuhiko and Asare, Nana Y.O and Ashida, Hisashi and Askanas, Valerie and Askew, David S and Auberger, Patrick and Baba, Misuzu and Backues, Steven K and Baehrecke, Eric H and Bahr, Ben A and Bai, Xue-Yuan and Bailly, Yannick and Baiocchi, Robert and Baldini, Giulia and Balduini, Walter and Ballabio, Andrea and Bamber, Bruce A and Bampton, Edward T.W and Juhász, Gábor and Bartholomew, Clinton R and Bassham, Diane C and Bast, Robert C and Batoko, Henri and Bay, Boon-Huat and Beau, Isabelle and Béchet, Daniel M and Begley, Thomas J and Behl, Christian and Behrends, Christian and Bekri, Soumeya and Bellaire, Bryan and Bendall, Linda J and Benetti, Luca and Berliocchi, Laura and Bernardi, Henri and Bernassola, Francesca and Besteiro, Sébastien and Bhatia-Kissova, Ingrid and Bi, Xiaoning and Biard-Piechaczyk, Martine and Blum, Janice S and Boise, Lawrence H and Bonaldo, Paolo and Boone, David L and Bornhauser, Beat C and Bortoluci, Karina R and Bossis, Ioannis and Bost, Frédéric and Bourquin, Jean-Pierre and Boya, Patricia and Boyer-Guittaut, Michaël and Bozhkov, Peter V and Brady, Nathan R and Brancolini, Claudio and Brech, Andreas and Brenman, Jay E and Brennand, Ana and Bresnick, Emery H and Brest, Patrick and Bridges, Dave and Bristol, Molly L and Brookes, Paul S and Brown, Eric J and Brumell, John H and ... and Linköpings universitet and Institutionen för klinisk och experimentell medicin and Geriatrik and Institutionen för medicin och hälsa and Farmakologi and Experimentell patologi and Hälsouniversitetet and Cellbiologi
Autophagy, ISSN 1554-8627, 04/2012, Volume 8, Issue 4, pp. 445 - 544
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and... 
stress | vacuole | autolysosome | flux | LC3 | autophagosome | lysosome | phagophore | Proteins | Binding | Landes | Calcium | Biology | Bioscience | Cell | Cycle | Organogenesis | Cancer | Phagophore | Lysosome | Autolysosome | Flux | Autophagosome | Vacuole | Stress | ACTIVATED PROTEIN-KINASE | CHAPERONE-MEDIATED AUTOPHAGY | VACUOLE TARGETING PATHWAY | ENDOPLASMIC-RETICULUM STRESS | ISOLATED RAT HEPATOCYTES | STARVATION-INDUCED AUTOPHAGY | GLUCAGON-INDUCED AUTOPHAGY | CELL BIOLOGY | PROGRAMMED CELL-DEATH | BREAST-CANCER CELLS | BETAINE HOMOCYSTEINE METHYLTRANSFERASE | Biological Assay - methods | Animals | Autophagy - genetics | Models, Biological | Humans | Index Medicus | Life Sciences | Cellular Biology | Review | Medical and Health Sciences | Medicin och hälsovetenskap
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2. Full Text Dynamics of Arabidopsis Dynamin-Related Protein 1C and a Clathrin Light Chain at the Plasma Membrane
by Catherine A. Konopka and Steven K. Backues and Sebastian Y. Bednarek
The Plant Cell, ISSN 1040-4651, 5/2008, Volume 20, Issue 5, pp. 1363 - 1380
Plant morphogenesis depends on polarized exocytic and endocytic membrane trafficking. Members of the Arabidopsis thaliana dynamin-related protein 1 (DRP1)... 
Endocytosis | Epidermal cells | Imaging | Fluorescence | Actins | Root hairs | Cell membranes | Plants | Plant cells | Seedlings | MULTIPLE STAGES | COATED VESICLES | BIOCHEMISTRY & MOLECULAR BIOLOGY | PLANT-CELLS | ROOT HAIRS | PLANT SCIENCES | CELL BIOLOGY | CELL PLATE FORMATION | AP-2 ADAPTER COMPLEX | MEDIATED ENDOCYTOSIS | TRANS-GOLGI NETWORK | FLUORESCENT-PROTEIN | ACTIN CYTOSKELETON | Recombinant Proteins - metabolism | Green Fluorescent Proteins - metabolism | Arabidopsis Proteins - genetics | Dynamins - metabolism | Plant Roots - metabolism | Dynamins - genetics | Cytoplasm - metabolism | Immunoblotting | Green Fluorescent Proteins - genetics | Recombinant Proteins - genetics | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | Microscopy, Confocal | Clathrin Light Chains - metabolism | Cell Membrane - metabolism | Clathrin Light Chains - genetics | Microscopy, Fluorescence | Arabidopsis thaliana | Clathrin | Utrophin | Index Medicus
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3. Full Text Transcriptional Regulation by Pho23 Modulates the Frequency of Autophagosome Formation
by Jin, Meiyan and He, Ding and Backues, Steven K and Freeberg, Mallory A and Liu, Xu and Kim, John K and Klionsky, Daniel J
Current Biology, ISSN 0960-9822, 06/2014, Volume 24, Issue 12, pp. 1314 - 1322
Autophagy as a conserved lysosomal/vacuolar degradation and recycling pathway is important in normal development and physiology, and defects in this process... 
YEAST | VACUOLE | TRANSPORT | GENETIC-ANALYSIS | BIOCHEMISTRY & MOLECULAR BIOLOGY | EARLY STEPS | TARGETING PATHWAY | CYTOPLASM | ATG9 | SACCHAROMYCES-CEREVISIAE | HISTONE DEACETYLASE | CELL BIOLOGY | Gene Expression Regulation, Fungal | Microscopy, Electron, Transmission | Autophagy-Related Proteins | Saccharomyces cerevisiae - physiology | Membrane Proteins - genetics | Saccharomyces cerevisiae - genetics | Phagosomes - physiology | Nuclear Proteins - metabolism | Gene Expression Profiling | Saccharomyces cerevisiae Proteins - genetics | Autophagy | Saccharomyces cerevisiae Proteins - metabolism | Membrane Proteins - metabolism | Nuclear Proteins - genetics | Real-Time Polymerase Chain Reaction | Developmental biology | Genetic aspects | Genetic transcription | RNA sequencing | Index Medicus
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4. Full Text Rph1/KDM4 Mediates Nutrient-Limitation Signaling that Leads to the Transcriptional Induction of Autophagy
by Bernard, Amélie and Jin, Meiyan and González-Rodríguez, Patricia and Füllgrabe, Jens and Delorme-Axford, Elizabeth and Backues, Steven K and Joseph, Bertrand and Klionsky, Daniel J
Current Biology, ISSN 0960-9822, 03/2015, Volume 25, Issue 5, pp. 546 - 555
Autophagy is a conserved process mediating vacuolar degradation and recycling. Autophagy is highly upregulated upon various stresses and is essential for cell... 
PATHWAYS | GIS1 | GENE | BIOCHEMISTRY & MOLECULAR BIOLOGY | DISEASE | ADAPTATIONS | PROTEINS | SACCHAROMYCES-CEREVISIAE | JMJC-DOMAIN | SELF-DIGESTION | REVEALS | CELL BIOLOGY | Microscopy, Electron, Transmission | Phosphorylation | Histone Demethylases - antagonists & inhibitors | Saccharomyces cerevisiae Proteins - antagonists & inhibitors | Humans | Gene Expression Regulation - physiology | Nitrogen - deficiency | Autophagy - physiology | Blotting, Western | Repressor Proteins - antagonists & inhibitors | Histone Demethylases - metabolism | Jumonji Domain-Containing Histone Demethylases - antagonists & inhibitors | Saccharomyces cerevisiae Proteins - metabolism | Signal Transduction - physiology | Autophagy - genetics | Cell Culture Techniques | HeLa Cells | Jumonji Domain-Containing Histone Demethylases - metabolism | Real-Time Polymerase Chain Reaction | Saccharomyces cerevisiae | Cell Survival - physiology | Repressor Proteins - metabolism | Developmental biology | Genetic aspects | Genetic transcription | Index Medicus | stress | autophagy | vacuole | lysosome | yeast
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5. Full Text Loss of Arabidopsis thaliana Dynamin-Related Protein 2B Reveals Separation of Innate Immune Signaling Pathways
by Smith, John M and Leslie, Michelle E and Robinson, Samuel J and Korasick, David A and Zhang, Tong and Backues, Steven K and Cornish, Peter V and Koo, Abraham J and Bednarek, Sebastian Y and Heese, Antje
PLoS Pathogens, ISSN 1553-7366, 12/2014, Volume 10, Issue 12, pp. e1004578 - e1004578
Vesicular trafficking has emerged as an important means by which eukaryotes modulate responses to microbial pathogens, likely by contributing to the correct... 
OXYGEN SPECIES PRODUCTION | PLANT-DEFENSE ELICITOR | CLATHRIN-INDEPENDENT ENDOCYTOSIS | MICROBIOLOGY | PLASMA-MEMBRANE | COATED VESICLE FORMATION | NADPH OXIDASE RBOHD | PSEUDOMONAS-SYRINGAE EFFECTOR | MOLECULAR-PATTERNS | VIROLOGY | PATTERN-RECOGNITION RECEPTORS | TRANSCRIPTION FACTOR | PARASITOLOGY | Arabidopsis - physiology | Arabidopsis Proteins - genetics | Arabidopsis Proteins - physiology | Flagellin - immunology | GTP-Binding Proteins - physiology | Signal Transduction | GTP-Binding Proteins - deficiency | Plant Immunity - physiology | Arabidopsis Proteins - immunology | Mutation - genetics | GTP-Binding Proteins - genetics | Arabidopsis - genetics | Protein Kinases - immunology | Immunity, Innate - physiology | NADPH Oxidases - physiology | Arabidopsis thaliana | Plant proteins | Botanical research | Immune response | Research | Health aspects | Immunological research | Index Medicus | Proteins | Studies | Genotype & phenotype | Statistical analysis | Bacteria | Ligands | Kinases | Experiments | Defense
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6. Full Text Control of autophagosome size and number by Atg7
by Cawthon, Hayley and Chakraborty, Ronith and Roberts, Jacquelyn R and Backues, Steven K
Biochemical and Biophysical Research Communications, ISSN 0006-291X, 09/2018, Volume 503, Issue 2, pp. 651 - 656
The induction of bulk autophagy by nitrogen starvation in baker's yeast ( ) involves the upregulation of many autophagy related proteins, including Atg7. One... 
Autophagic body | Simulation | Autophagosome | Atg7 | Autophagy | TEM | MECHANISM | BIOCHEMISTRY & MOLECULAR BIOLOGY | REGULATES AUTOPHAGY | PHAGOPHORE | INDUCTION | SACCHAROMYCES-CEREVISIAE | YEAST | DENSITY | VACUOLE | PROTEIN LIPIDATION | BIOPHYSICS | EXPANSION | Saccharomyces cerevisiae - cytology | Saccharomyces cerevisiae - metabolism | Microscopy, Electron, Transmission | Autophagy-Related Protein 7 - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Saccharomyces cerevisiae - ultrastructure | Autophagosomes - metabolism | Autophagy-Related Protein 8 Family - metabolism | Autophagosomes - ultrastructure | Proteins | Index Medicus
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7. Full Text Atg41/Icy2 regulates autophagosome formation
by Yao, Zhiyuan and Delorme-Axford, Elizabeth and Backues, Steven K and Klionsky, Daniel J
Autophagy, ISSN 1554-8627, 12/2015, Volume 11, Issue 12, pp. 2288 - 2299
Macroautophagy (hereafter autophagy) is one of the major degradation systems in eukaryotic cells, and its dysfunction may result in diseases ranging from... 
stress | autophagy | vacuole | lysosome | yeast | Yeast | Vacuole | Autophagy | Stress | Lysosome | COMPLEX | MACHINERY | SACCHAROMYCES-CEREVISIAE | CELL BIOLOGY | TRANSPORT | PATHWAY | ATG9 | PROTEINS | TRANSCRIPTIONAL REGULATION | MASTER REGULATOR | Saccharomyces cerevisiae - metabolism | Carrier Proteins - metabolism | Lysosomes - metabolism | Phagosomes - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Vacuoles - metabolism | Autophagy - physiology | Index Medicus
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8. Full Text Ume6 transcription factor is part of a signaling cascade that regulates autophagy
by Clinton R. Bartholomew and Tsukasa Suzuki and Zhou Du and Steven K. Backues and Meiyan Jin and Melinda A. Lynch-Day and Midori Umekawa and Avani Kamath and Mantong Zhao and Zhiping Xie and Ken Inoki and Daniel J. Klionsky
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 7/2012, Volume 109, Issue 28, pp. 11206 - 11210
Autophagy has been implicated in a number of physiological processes important for human heath and disease. Autophagy involves the formation of a... 
Yeasts | Starvation | Phosphorylation | Genes | Cell lines | HeLa cells | Gene expression regulation | Promoter regions | Physiological regulation | Nitrogen | Phagophore | Vacuole | Stress | Lysosome | Membrane biogenesis | PATHWAYS | stress | APOPTOSIS | vacuole | PROTEIN-KINASE | MULTIDISCIPLINARY SCIENCES | MACHINERY | membrane biogenesis | INDUCTION | SACCHAROMYCES-CEREVISIAE | YEAST | REPRESSION | GENE-EXPRESSION | lysosome | phagophore | Protein Kinases - metabolism | Promoter Regions, Genetic | Signal Transduction | Microtubule-Associated Proteins - metabolism | Humans | Sin3 Histone Deacetylase and Corepressor Complex - metabolism | Histone Deacetylases - metabolism | Autophagy | Saccharomyces cerevisiae - metabolism | Autophagy-Related Protein 8 Family | Lysosomes - metabolism | Models, Biological | Gene Deletion | Saccharomyces cerevisiae Proteins - metabolism | Vacuoles - metabolism | Transcription, Genetic | Models, Genetic | HeLa Cells | Repressor Proteins - metabolism | Physiological aspects | Autophagy (Cytology) | Transcription factors | Genetic aspects | Research | Genetic regulation | Proteins | Signal transduction | Membranes | Gene expression | Cells | Index Medicus | Biological Sciences
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9. Full Text Atg23 and Atg27 Act at the Early Stages of Atg9 Trafficking in S. cerevisiae
by Backues, Steven K and Orban, Daniel P and Bernard, Amélie and Singh, Kushal and Cao, Yang and Klionsky, Daniel J
Traffic, ISSN 1398-9219, 02/2015, Volume 16, Issue 2, pp. 172 - 190
Atg9 is a conserved multipass transmembrane protein with an essential role in autophagy. In Saccharomyces cerevisiae , it travels through the secretory pathway... 
autophagy | phagophore assembly site | sorting | clustering | Golgi | Cvt pathway | trafficking | Trafficking | Phagophore assembly site | Clustering | Autophagy | Sorting | PRE-AUTOPHAGOSOMAL STRUCTURE | COMPLEX | AMINOPEPTIDASE-I | BUDDING YEAST | EARLY STEPS | MEMBRANE-PROTEIN | SACCHAROMYCES-CEREVISIAE | SELECTIVE AUTOPHAGY | CELL BIOLOGY | VACUOLE | VESICLE FORMATION | Autophagy-Related Proteins | Membrane Proteins - genetics | Saccharomyces cerevisiae - genetics | Vesicular Transport Proteins - metabolism | Phagosomes - metabolism | Vesicular Transport Proteins - genetics | Receptors, Cell Surface - metabolism | Saccharomyces cerevisiae Proteins - genetics | Protein Transport | Saccharomyces cerevisiae - metabolism | Carrier Proteins - genetics | Carrier Proteins - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Protein Binding | Membrane Proteins - metabolism | Receptors, Cell Surface - genetics | Proteins | Analysis | Index Medicus
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