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BMC Bioinformatics, ISSN 1471-2105, 12/2010, Volume 11, Issue 12, pp. S4 - S4
Background: Widespread adoption of high-throughput sequencing has greatly increased the scale and sophistication of computational infrastructure needed to... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Computational Biology - methods | Software | Internet | Cluster Analysis | Computer science | Cloud computing | Linux | User interface | Infrastructure | Life sciences | Grants | Deoxyribonucleic acid--DNA
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2018, Volume 46, Issue W1, pp. W537 - W544
Abstract Galaxy (homepage: https://galaxyproject.org, main public server: https://usegalaxy.org) is a web-based scientific analysis platform used by tens of... 
FRAMEWORK | BIOINFORMATICS | RNA | WEB | BIOCHEMISTRY & MOLECULAR BIOLOGY | TOOLS | Web Server Issue
Journal Article
Genome Biology, ISSN 1474-760X, 08/2010, Volume 11, Issue 8, pp. R86 - R86
Increased reliance on computational approaches in the life sciences has revealed grave concerns about how accessible and reproducible computation-reliant... 
CHIP-SEQ | BIOINFORMATICS | CHROMATIN | RNA-SEQ | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOLOGY | GENETICS & HEREDITY | FRAMEWORK | TOOL | Computational Biology - methods | Algorithms | Animals | Humans | Internet | Genomics - methods | Databases, Nucleic Acid | Software
Journal Article
by Dunham, Ian and Kundaje, Anshul and Aldred, Shelley F and Collins, Patrick J and Davis, Carrie A and Doyle, Francis and Epstein, Charles B and Frietze, Seth and Harrow, Jennifer and Kaul, Rajinder and Khatun, Jainab and Lajoie, Bryan R and Landt, Stephen G and Lee, Bum-Kyu and Pauli, Florencia and Rosenbloom, Kate R and Sabo, Peter and Safi, Alexias and Sanyal, Amartya and Shoresh, Noam and Simon, Jeremy M and Song, Lingyun and Trinklein, Nathan D and Altshuler, Robert C and Birney, Ewan and Brown, James B and Cheng, Chao and Djebali, Sarah and Dong, Xianjun and Ernst, Jason and Furey, Terrence S and Gerstein, Mark and Giardine, Belinda and Greven, Melissa and Hardison, Ross C and Harris, Robert S and Herrero, Javier and Hoffman, Michael M and Iyer, Sowmya and Kellis, Manolis and Kheradpour, Pouya and Lassmann, Timo and Li, Qunhua and Lin, Xinying and Marinov, Georgi K and Merkel, Angelika and Mortazavi, Ali and Parker, Stephen C. J and Reddy, Timothy E and Rozowsky, Joel and Schlesinger, Felix and Thurman, Robert E and Wang, Jie and Ward, Lucas D and Whitfield, Troy W and Wilder, Steven P and Wu, Weisheng and Xi, Hualin S and Yip, Kevin Y and Zhuang, Jiali and Bernstein, Bradley E and Green, Eric D and Gunter, Chris and Snyder, Michael and Pazin, Michael J and Lowdon, Rebecca F and Dillon, Laura A. L and Adams, Leslie B and Kelly, Caroline J and Zhang, Julia and Wexler, Judith R and Good, Peter J and Feingold, Elise A and Crawford, Gregory E and Dekker, Job and Elnitski, Laura and Farnham, Peggy J and Giddings, Morgan C and Gingeras, Thomas R and Guigó, Roderic and Hubbard, Timothy J and Kent, W. James and Lieb, Jason D and Margulies, Elliott H and Myers, Richard M and Stamatoyannopoulos, John A and Tenenbaum, Scott A and Weng, Zhiping and White, Kevin P and Wold, Barbara and Yu, Yanbao and Wrobel, John and Risk, Brian A and Gunawardena, Harsha P and Kuiper, Heather C and Maier, Christopher W and Xie, Ling and Chen, Xian and Mikkelsen, Tarjei S and Gillespie, Shawn and ... and ENCODE Project Consortium and The ENCODE Project Consortium
Nature, ISSN 0028-0836, 09/2012, Volume 489, Issue 7414, pp. 57 - 74
Journal Article
Genome Biology, ISSN 1465-6906, 02/2014, Volume 15, Issue 2, pp. 403 - 403
The proliferation of web-based integrative analysis frameworks has enabled users to perform complex analyses directly through the web. Unfortunately, it also... 
TRANSCRIPTOME | RNA | MITOCHONDRIAL | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | HETEROPLASMY | GENETICS & HEREDITY | Science | Software | Internet | Computational Biology | Open Letter
Journal Article
F1000Research, ISSN 2046-1402, 2016, Volume 5, p. 2757
Galaxy provides a web-based platform for interactive, large-scale data analyses, which integrates bioinformatics tools written in a variety of languages. A... 
Bioinformatics
Journal Article
Concurrency and Computation: Practice and Experience, ISSN 1532-0626, 11/2015, Volume 27, Issue 16, pp. 4330 - 4343
Summary Fueled by the radically increased capacity to generate data over the past decade, the field of biomedical research has been constrained by the ability... 
federation | data analysis | performance | accessibility | experimentation | design | cloud bursting | genomics | cloud computing | COMPUTER SCIENCE, SOFTWARE ENGINEERING | COMPUTER SCIENCE, THEORY & METHODS | CHALLENGES | Analysis | Genomics | Information management | Freeware | Cloud computing | Platforms | Concurrency | Data integration | Data processing | Life sciences | Bursting
Journal Article