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Cold Spring Harbor Protocols, ISSN 1940-3402, 06/2015, Volume 2015, Issue 6, pp. 593 - 598
Chromosome conformation capture carbon copy (5C) is a high-throughput method for detecting ligation products of interest in a chromosome conformation capture... 
Chromatin | Gene Library | Chromosome Mapping - methods | Chromosomes - metabolism | DNA Primers - metabolism | Saccharomycetales - physiology | Saccharomycetales - ultrastructure | Nucleic Acid Conformation | Carbon
Journal Article
Cold Spring Harbor Protocols, ISSN 1940-3402, 06/2015, Volume 2015, Issue 6, pp. 587 - 592
In experiments using chromosome conformation capture followed by PCR (3C-PCR) or chromosome conformation capture carbon copy (5C), it is critical to control... 
Yeasts | Gene Library | Polymerase Chain Reaction | Chromosome Mapping | DNA Primers | Genomics - methods | Nucleic Acid Conformation | Chromosomes
Journal Article
Cold Spring Harbor Protocols, ISSN 1940-3402, 07/2015, Volume 2015, Issue 7, pp. 614 - 618
Chromosome conformation capture (3C) has revolutionized the ways in which the conformation of chromatin and its relationship to other molecular functions can... 
Chromatin - metabolism | Saccharomycetales - genetics | Chromosomes, Fungal - chemistry | Saccharomycetales - chemistry | Chromosomes, Fungal - metabolism | Nucleic Acid Conformation | Chromatin - chemistry
Journal Article
Nature Cell Biology, ISSN 1465-7392, 09/2017, Volume 19, Issue 9, pp. 1071 - 1080
Structural maintenance of chromosomes (SMC) protein complexes are key determinants of chromosome conformation. Using Hi-C and polymer modelling, we study how... 
ORGANIZATION | 3D GENOME | BUDDING YEAST | COHESIN SUBUNIT SCC1 | LOOP EXTRUSION | S-PHASE | CONDENSATION | CELL-CYCLE | SISTER-CHROMATID SEPARATION | SACCHAROMYCES-CEREVISIAE | CELL BIOLOGY | Chromatin - metabolism | DNA, Fungal - genetics | Mitosis | Saccharomyces cerevisiae - genetics | DNA, Ribosomal - metabolism | Multiprotein Complexes - genetics | DNA, Fungal - chemistry | Structure-Activity Relationship | DNA, Ribosomal - chemistry | Chromosome Structures | DNA-Binding Proteins - metabolism | Saccharomyces cerevisiae - metabolism | Multiprotein Complexes - metabolism | Chromosomes, Fungal - metabolism | Computer Simulation | Cell Cycle Proteins - genetics | Nucleic Acid Conformation | Chromatin - chemistry | DNA, Ribosomal - genetics | Chromosomal Proteins, Non-Histone - metabolism | Cell Cycle Proteins - metabolism | Adenosine Triphosphatases - metabolism | Chromatin Assembly and Disassembly | Models, Molecular | Saccharomyces cerevisiae Proteins - genetics | DNA-Binding Proteins - genetics | Chromosomal Proteins, Non-Histone - genetics | Chromosomes, Fungal - chemistry | Chromosomes, Fungal - genetics | DNA, Fungal - metabolism | Saccharomyces cerevisiae Proteins - metabolism | Adenosine Triphosphatases - genetics | Models, Genetic | Chromatin - genetics | Saccharomyces cerevisiae - growth & development | Cohesion | Chromatin | Yeast | Sister chromatids | Computer simulation | Compacts | Compaction | Saccharomyces | Condensin | Compacting | Chromatids | Cohesin | Chromosomes | Saccharomyces cerevisiae
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 05/2017, Volume 114, Issue 21, p. 5479
The dynamic nature of genome organization impacts critical nuclear functions including the regulation of gene expression, replication, and DNA damage repair.... 
Stresses | High resolution | Yeast | Stability | DNA damage | Genomes | Gene expression | DNA repair | Cells | Defects | Proteins | DNA biosynthesis | Telomeres | Replication origins | DNA-binding protein | Replication | Mutation | Aberration | Chromosomes | Binding sites | Nuclear capture | Deoxyribonucleic acid--DNA
Journal Article
Cold Spring Harbor Protocols, ISSN 1940-3402, 06/2015, Volume 2015, Issue 6, pp. 580 - 586
Chromosome conformation capture (3C) is a method for studying chromosomal organization that takes advantage of formaldehyde cross-linking to measure the... 
Chromatin - metabolism | Chromosomes - drug effects | Cross-Linking Reagents - pharmacology | Molecular Conformation | Formaldehyde - pharmacology | Saccharomycetales - ultrastructure | Chromatin - chemistry
Journal Article
Cold Spring Harbor Protocols, ISSN 1940-3402, 07/2015, Volume 2015, Issue 7, pp. 649 - 662
Hi-C enables simultaneous detection of interaction frequencies between all possible pairs of restriction fragments in the genome. The Hi-C method is based on... 
Chromatin - metabolism | Saccharomycetales - genetics | Chromosomes, Fungal - chemistry | Nucleic Acid Conformation | Chromosomes, Fungal - metabolism | Chromatin - chemistry
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 05/2017, Volume 114, Issue 21, pp. 5479 - 5484
The dynamic nature of genome organization impacts critical nuclear functions including the regulation of gene expression, replication, and DNA damage repair.... 
Telomeres | Replication | Genome organization | DNA damage | Shelterin | replication | LOCALIZATION | PROTEIN | RIF1 | MULTIDISCIPLINARY SCIENCES | telomeres | DNA-DAMAGE | CHROMOSOMES | CENTROMERES | ORGANIZATION | genome organization | ARCHITECTURE | CELL-CYCLE | ANCHOR TELOMERES | DNA replication | Gene expression | Health aspects | Biological Sciences
Journal Article
Biophysical Journal, ISSN 0006-3495, 01/2013, Volume 104, Issue 2, pp. 581a - 582a
Journal Article
Methods, ISSN 1046-2023, 11/2012, Volume 58, Issue 3, pp. 268 - 276
We describe a method, HiaC, to comprehensively detect chromatin interactions in the mammalian nucleus. This method is based on Chromosome Conformation Capture,... 
Chromatin | Purification | Nucleotide sequence | DNA | genomics | Genomes | Nucleotides | Chromosomes | Nuclei | Formaldehyde | Conformation | DNA sequencing
Journal Article
Epigenetics & Chromatin, ISSN 1756-8935, 03/2013, Volume 6, Issue S1, pp. P129 - P129
  Doc number: P129 
Epigenetics | Genomes
Journal Article
Epigenetics & Chromatin, ISSN 1756-8935, 03/2013, Volume 6, Issue S1, pp. P128 - P128
  Doc number: P128 
Epigenetics | Genetics | Gene loci | Fractals | Yeast | Chromosomes
Journal Article
Epigenetics & Chromatin, ISSN 1756-8935, 03/2013, Volume 6, Issue S1
Journal Article
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