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1. Full Text Examining the global distribution of dominant archaeal populations in soil
by Bates, Scott T and Berg-Lyons, Donna and Caporaso, J Gregory and Walters, William A and Knight, Rob and Fierer, Noah
The ISME Journal, ISSN 1751-7362, 05/2011, Volume 5, Issue 5, pp. 908 - 917
Crenarchaeota | pyrosequencing | soil | microbial ecology | archaea | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Antarctic Regions | Crenarchaeota - classification | South America | Genes, Bacterial | Nitrogen - metabolism | Crenarchaeota - isolation & purification | Gene Library | Soil Microbiology | Genes, Archaeal | Soil - analysis | Phylogeny | Bacteria - genetics | North America | Sequence Analysis, DNA | Bacteria - isolation & purification | Ecosystem | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Genes, rRNA | Crenarchaeota - genetics | Index Medicus | Original
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2. Full Text Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
by Caporaso, J. Gregory and Lauber, Christian L and Walters, William A and Berg-Lyons, Donna and Huntley, James and Fierer, Noah and Owens, Sarah M and Betley, Jason and Fraser, Louise and Bauer, Markus and Gormley, Niall and Gilbert, Jack A and Smith, Geoff and Knight, Rob
The ISME Journal, ISSN 1751-7362, 08/2012, Volume 6, Issue 8, pp. 1621 - 1624
illumine | QIIME | barcoded sequencing | Environmental Sciences & Ecology | Ecology | Life Sciences & Biomedicine | Microbiology | Science & Technology | High-Throughput Nucleotide Sequencing - economics | Reproducibility of Results | Environmental Microbiology | Ecosystem | High-Throughput Nucleotide Sequencing - instrumentation | High-Throughput Nucleotide Sequencing - methods | Bacteria - genetics | Index Medicus | Short Communication
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3. Full Text Cohabiting family members share microbiota with one another and with their dogs
by Song, Se Jin and Lauber, Christian and Costello, Elizabeth K and Lozupone, Catherine A and Humphrey, Gregory and Berg-Lyons, Donna and Gregory Caporaso, J and Knights, Dan and Clemente, Jose C and Nakielny, Sara and Gordon, Jeffrey I and Fierer, Noah and Knight, Rob
eLife, ISSN 2050-084X, 04/2013, Volume 2013, Issue 2, pp. e00458 - e00458
Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Residence Characteristics | Skin - microbiology | Age Factors | Humans | Middle Aged | Tongue - microbiology | Child, Preschool | Infant | Housing | Pets - microbiology | Feces - microbiology | Family Characteristics | Microbiota | Animals | Intestines - microbiology | Adolescent | Dogs | Aged, 80 and over | Adult | Family | Aged | Child | Laboratories | Households | Families & family life | Biochemistry | Reptiles & amphibians | Variance analysis | Computer science | Pets | Hypotheses | Microorganisms | Skin | Teenagers | Feces | Children | Age | Index Medicus
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4. Full Text Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
by Walters, William and Hyde, Embriette R and Berg-Lyons, Donna and Ackermann, Gail and Humphrey, Greg and Parada, Alma and Gilbert, Jack A and Jansson, Janet K and Gregory Caporaso, J and Fuhrman, Jed A and Apprill, Amy and Knight, Rob
mSystems, ISSN 2379-5077, 01/2016, Volume 1, Issue 1
Marker genes | Microbial ecology | ITS | Primers | 16S
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5. Full Text A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
by Metcalf, Jessica L and Wegener Parfrey, Laura and Gonzalez, Antonio and Lauber, Christian L and Knights, Dan and Ackermann, Gail and Humphrey, Gregory C and Gebert, Matthew J and Van Treuren, Will and Berg-Lyons, Donna and Keepers, Kyle and Guo, Yan and Bullard, James and Fierer, Noah and Carter, David O and Knight, Rob
eLife, ISSN 2050-084X, 2013, Volume 2, pp. e01104 - e01104
forensics | Mouse | postmortem interval | decomposition | microbial ecology | microbial succession | time since death | Biology | Life Sciences & Biomedicine - Other Topics | Life Sciences & Biomedicine | Science & Technology | Forensic Sciences | Models, Animal | Microbiota | Mice | Animals | Postmortem Changes | Computer science | Forensic science | Laboratories | Forensic sciences | Decomposition | Skin | Biochemistry | Deoxyribonucleic acid--DNA | Investigations | Abdomen | Index Medicus
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6. Full Text Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
by J. Gregory Caporaso and Christian L. Lauber and William A. Walters and Donna Berg-Lyons and Catherine A. Lozupone and Peter J. Turnbaugh and Noah Fierer and Rob Knight and Jeffrey I. Gordon
Proceedings of the National Academy of Sciences - PNAS, ISSN 0027-8424, 3/2011, Volume 108, Issue Supplement 1, pp. 4516 - 4522
Polymerase chain reaction | Datasets | Community structure | Sustainable communities | Species diversity | Taxa | Blasts | Soil samples | Phylogenetics | Sequencing | Colloquium Papers | Human microbiome | Microbial community analysis | Microbial ecology | Next-generation sequencing | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Reproducibility of Results | Species Specificity | Bacteria - genetics | Genetic Variation | Bacteria - isolation & purification | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Environment | Software | High-Throughput Nucleotide Sequencing - methods | DNA Barcoding, Taxonomic - methods | Sequence Analysis, DNA - methods | Cluster Analysis | Protein biosynthesis | Nucleotide sequencing | Research | Properties | Ribosomal RNA | Methods | Biosphere | Index Medicus | Papers | Biological Sciences | microbial community analysis | human microbiome | microbial ecology | next-generation sequencing
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7. Full Text Moving pictures of the human microbiome
by Caporaso, J Gregory and Lauber, Christian L and Costello, Elizabeth K and Berg-Lyons, Donna and Gonzalez, Antonio and Stombaugh, Jesse and Knights, Dan and Gajer, Pawel and Ravel, Jacques and Fierer, Noah and Gordon, Jeffrey I and Knight, Rob
Genome Biology, ISSN 1474-7596, 05/2011, Volume 12, Issue 5, pp. R50 - R50
Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Humans | Gastrointestinal Tract - microbiology | Organ Specificity | Bacteria - genetics | Obesity - microbiology | Metagenome - genetics | Time Factors | Computer Simulation | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Inflammatory Bowel Diseases - microbiology | High-Throughput Nucleotide Sequencing | Seasons | Genomics - methods | Index Medicus | Research
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8. Full Text PrimerProspector: De novo design and taxonomic analysis of barcoded polymerase chain reaction primers
by Walters, William A and Caporaso, J. Gregory and Lauber, Christian L and Berg-Lyons, Donna and Fierer, Noah and Knight, Rob
Bioinformatics, ISSN 1367-4803, 04/2011, Volume 27, Issue 8, pp. 1159 - 1161
Statistics & Probability | Biochemistry & Molecular Biology | Physical Sciences | Computer Science, Interdisciplinary Applications | Life Sciences & Biomedicine | Technology | Biochemical Research Methods | Computer Science | Mathematics | Biotechnology & Applied Microbiology | Science & Technology | Mathematical & Computational Biology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | General aspects | Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) | Sequence Alignment | Base Sequence | Humans | Polymerase Chain Reaction | Software | Phylogeny | DNA Primers - chemistry | Design engineering | Freeware | Software packages | Collection | On-line systems | Source code | Bioinformatics | Computer programs | Index Medicus | Applications Note
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9. Full Text A preliminary survey of lichen associated eukaryotes using pyrosequencing
by BATES, Scott T and BERG-LYONS, Donna and LAUBER, Christian L and WALTERS, William A and KNIGHT, Rob and FIERER, Noah
The Lichenologist (London), ISSN 0024-2829, 01/2012, Volume 44, Issue 1, pp. 137 - 146
Ascomycota | bacteria | endolichenic/lichenicolous fungi | invertebrates | Life Sciences & Biomedicine | Plant Sciences | Mycology | Science & Technology
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10. Full Text Advancing Our Understanding of the Human Microbiome Using QIIME
by Navas-Molina, José A and Peralta-Sánchez, Juan M and González, Antonio and McMurdie, Paul J and Vázquez-Baeza, Yoshiki and Xu, Zhenjiang and Ursell, Luke K and Lauber, Christian and Zhou, Hongwei and Song, Se Jin and Huntley, James and Ackermann, Gail L and Berg-Lyons, Donna and Holmes, Susan and Caporaso, J. Gregory and Knight, Rob
2013, ISBN 9780124078635, Volume 531, 74
Microbial ecology | Microbial community analyses | Highthroughput sequencing | QIIME | Microbiome | Evolutionary biology | Animals | Microbiota - genetics | Humans | Computational Biology | Bacteria - pathogenicity | Mice | Software | Phylogeny | High-Throughput Nucleotide Sequencing - methods | Bacteria - genetics | Index Medicus
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11. Full Text Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection
by Weingarden, Alexa and González, Antonio and Vázquez-Baeza, Yoshiki and Weiss, Sophie and Humphry, Gregory and Berg-Lyons, Donna and Knights, Dan and Unno, Tatsuya and Bobr, Aleh and Kang, Johnthomas and Khoruts, Alexander and Knight, Rob and Sadowsky, Michael J
Microbiome, ISSN 2049-2618, 03/2015, Volume 3, Issue 1, pp. 10 - 10
Short- and long-term changes in microbiota following FMT | Life Sciences & Biomedicine | Microbiology | Science & Technology | Infection | Care and treatment | Relapse | Antibiotics | Microbiota (Symbiotic organisms) | RNA | Analysis | Diseases
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