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by Abbott, B. P and Acernese, F and Ackley, K and Affeldt, C and Afrough, M and Agarwal, B and Agathos, M and Agatsuma, K and Aggarwal, N and Aguiar, O. D and Ain, A and Allen, B and Allen, G and Allocca, A and Altin, P. A and Anderson, S. B and Arnaud, N and Ast, M and Aston, S. M and Atallah, D. V and Bader, M. K. M and Ballmer, S. W and Barclay, S. E and Barone, F and Barr, B and Bartlett, J and Basti, A and Batch, J. C and Bawaj, M and Bécsy, B and Beer, C and Bergmann, G and Bernuzzi, S and Berry, C. P. L and Bhandare, R and Billingsley, G and Birch, J and Birney, R and Birnholtz, O and Biscans, S and Bisht, A and Bitossi, M and Biwer, C and Blair, C. D and Blair, D. G and Blair, R. M and Bloemen, S and Bock, O and Bode, N and Boer, M and Boom, B. A and Bork, R and Bose, S and Bossie, K and Bouffanais, Y and Bozzi, A and Bradaschia, C and Brady, P. R and Branchesi, M and Briant, T and Brisson, V and Brooks, A. F and Buchanan, C. C and Bulik, T and Bulten, H. J and Buskulic, D and Byer, R. L and Cabero, M and Cahillane, C and Calderón Bustillo, J and Calloni, E and Canepa, M and Capano, C. D and Carbognani, F and Carullo, G and Casentini, C and Cavaglià, M and Cepeda, C. B and Cerdá-Durán, P and Cerretani, G and Cesarini, E and Chase, E and Chassande-Mottin, E and Chatterjee, D and Cheeseboro, B. D and Chen, X and Chia, H and Chincarini, A and Chiummo, A and Chua, A. J. K and Chung, A. K. W and Chung, S and Ciolfi, R and Cirone, A and Clark, J. A and Cohadon, P.-F and Cohen, D and Constancio, M and Costa, C. A and Countryman, S. T and ... and LIGO Scientific Collaboration and Virgo Collaboration and LIGO Sci Collaboration & Virgo and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC)
Physical review letters, ISSN 1079-7114, 10/2017, Volume 119, Issue 16, pp. 161101 - 161101
On August 17, 2017 at 12∶41:04 UTC the Advanced LIGO and Advanced Virgo gravitational-wave detectors made their first observation of a binary neutron star... 
Physics, Multidisciplinary | Physical Sciences | Physics | Science & Technology | General Relativity and Quantum Cosmology | Astrophysics | ASTRONOMY AND ASTROPHYSICS
Journal Article
by Wang, Zehua and Zhang, Min and Guo, Weiwei and Wu, Zhiyuan and Wang, Yue and Xie, Wen and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Naresh, Rashi and Sun, Qiang and Wan, Yunhu and Wu, Ye and Frazer, Scott and Heiman, David I and Kim, Jaegil and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Leinonen, Kalle and Liu, Yuexin and Miller, Michael and Reynolds, Sheila and Shmulevich, Ilya and Thorsson, Vesteinn and Zhang, Wei and Hegde, Apurva M and Ju, Zhenlin and Li, Jun and Liang, Han and Ling, Shiyun and Liu, Wenbin and Lu, Yiling and Mills, Gordon B and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and Zhang, Jiexin and Abeshouse, Adam and Chakravarty, Debyani and Chatila, Walid K and Bruijn, Inode and Gao, Jianjiong and Gross, Benjamin E and Heins, Zachary J and Kundra, Ritika and La, Konnor and Ladanyi, Marc and Luna, Augustin and Nissan, Moriah G and Phillips, Sarah M and Sanchez-Vega, Francisco and Sander, Chris and Schultz, Nikolaus and Sumer, S. Onur and Taylor, Barry S and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and Benz, Christopher and Stuart, Joshua M and Yau, Christina and Hayes, D. Neil and Parker, Joel S and Wilkerson, Matthew D and Ally, Adrian and Balasundaram, Miruna and Bowlby, Reanne and Brooks, Denise and Carlsen, Rebecca and Chuah, Eric and Dhalla, Noreen and Holt, Robert and Jones, Steven J.M and Kasaian, Katayoon and Lee, Darlene and Ma, Yussanne and Marra, Marco A and Mayo, Michael and Mungall, Andrew J and Mungall, Karen and Robertson, A. Gordon and Sipahimalani, Payal and Tam, Angela and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network
Cancer cell, ISSN 1535-6108, 04/2018, Volume 33, Issue 4, pp. 706 - 720.e9
We characterized the epigenetic landscape of genes encoding long noncoding RNAs (lncRNAs) across 6,475 tumors and 455 cancer cell lines. In stark contrast to... 
TCGA pan-cancer | MYC | CIMP | LOC284930 | long noncoding RNA | breast cancer | ENSG00000224271 | EPIC1 | P21 | Oncology | Cancer Research | Cell Biology | Life Sciences & Biomedicine | Science & Technology | Index Medicus
Journal Article
by Sokolov, Artem and Gentles, Andrew J and Burzykowski, Tomasz and Poisson, Laila and Weinstein, John N and Huelsken, Joerg and Omberg, Larsson and Colaprico, Antonio and Czerwińska, Patrycja and Mazurek, Sylwia and Krasnitz, Alex and Godwin, Andrew K and Lazar, Alexander J and Stuart, Joshua M and Hoadley, Katherine A and Laird, Peter W and Noushmehr, Houtan and Wiznerowicz, Maciej and Demchok, John A and Kasapi, Melpomeni and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Liu, Jia and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Getz, Gad and Heiman, David I and Lawrence, Michael S and Lin, Pei and Meier, Sam and Noble, Michael S and Saksena, Gordon and Voet, Doug and Zhang, Hailei and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Liu, Yuexin and Miller, Michael and Reynolds, Sheila and Thorsson, Vesteinn and Zhang, Wei and Hegde, Apurva M and Ju, Zhenlin and Korkut, Anil and Li, Jun and Ling, Shiyun and Liu, Wenbin and Lu, Yiling and Mills, Gordon B and Abeshouse, Adam and Chakravarty, Debyani and Chatila, Walid K and de Bruijn, Ino and Gao, Jianjiong and Gross, Benjamin E and Heins, Zachary J and Kundra, Ritika and La, Konnor and Ladanyi, Marc and Luna, Augustin and Nissan, Moriah G and Ochoa, Angelica and Sander, Chris and Sun, Yichao and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and Benz, Christopher and Yau, Christina and Hayes, D. Neil and Parker, Joel S and Balasundaram, Miruna and Bowlby, Reanne and Brooks, Denise and Carlsen, Rebecca and Dhalla, Noreen and Holt, Robert and Jones, Steven J.M and Kasaian, Katayoon and Lee, Darlene and Ma, Yussanne and Mayo, Michael and Mungall, Andrew J and Mungall, Karen and ... and The Cancer Genome Atlas Research Network and Cancer Genome Atlas Res Network
Cell (Cambridge), ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 338 - 354.e15
Cancer progression involves the gradual loss of a differentiated phenotype and acquisition of progenitor and stem-cell-like features. Here, we provide novel... 
pan-cancer | genomic | stemness | epigenomic | dedifferentiation | cancer stem cells | machine learning | The Cancer Genome Atlas | Biochemistry, Genetics and Molecular Biology(all) | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Index Medicus
Journal Article
by Kanchi, Rupa S and Hegde, Apurva M and Lenoir, Walter and Liu, Wenbin and Liu, Yuexin and Shen, Hui and Rao, Arvind and Schultz, Andre and Li, Xubin and Sumazin, Pavel and Mestdagh, Pieter and Gunaratne, Preethi H and Yau, Christina and Bowlby, Reanne and Robertson, A. Gordon and Tiezzi, Daniel G and Godwin, Andrew K and Sood, Anil K and Adebamowo, Clement and Baggerly, Keith A and Chiu, Hua-Sheng and Liu, Liang and MacKenzie, Karen and Orsulic, Sandra and Roszik, Jason and Shelley, Carl Simon and Song, Qianqian and Vellano, Christopher P and Wentzensen, Nicolas and Weinstein, John N and Mills, Gordon B and Levine, Douglas A and Caesar-Johnson, Samantha J and Kasapi, Melpomeni and Ferguson, Martin L and Sofia, Heidi J and Tarnuzzer, Roy and Wang, Zhining and Zenklusen, Jean C and Chudamani, Sudha and Liu, Jia and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Kim, Jaegil and Lawrence, Michael S and Lin, Pei and Noble, Michael S and Saksena, Gordon and Voet, Doug and Bernard, Brady and Chambwe, Nyasha and Dhankani, Varsha and Knijnenburg, Theo and Kramer, Roger and Miller, Michael and Reynolds, Sheila and Thorsson, Vesteinn and Broom, Bradley M and Ju, Zhenlin and Li, Jun and Ling, Shiyun and Lu, Yiling and Ryan, Michael and Zhang, Jiexin and Abeshouse, Adam and Armenia, Joshua and Chatila, Walid K and Gross, Benjamin E and Kundra, Ritika and La, Konnor and Luna, Augustin and Ochoa, Angelica and Phillips, Sarah M and Reznik, Ed and Sanchez-Vega, Francisco and Sander, Chris and Schultz, Nikolaus and Sheridan, Robert and Sumer, S. Onur and Taylor, Barry S and Wang, Jioajiao and Wong, Christopher K and Hayes, D. Neil and Parker, Joel S and Wilkerson, Matthew D and Ally, Adrian and Balasundaram, Miruna and Brooks, Denise and Chuah, Eric and Dhalla, Noreen and Lee, Darlene and Marra, Marco A and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Cancer cell, ISSN 1535-6108, 04/2018, Volume 33, Issue 4, pp. 690 - 705.e9
We analyzed molecular data on 2,579 tumors from The Cancer Genome Atlas (TCGA) of four gynecological types plus breast. Our aims were to identify shared and... 
omics | ovarian cancer | uterine cancer | gynecologic cancer | breast cancer | uterine carcinosarcoma | pan-gynecologic | cervical cancer | TCGA | The Cancer Genome Atlas | Oncology | Cell Biology | Cancer Research | Life Sciences & Biomedicine | Science & Technology | Index Medicus | molecular features | Pan-Gynecologic | Gynecologic cancer
Journal Article
by Ding, Li and Bailey, Matthew H and Thorsson, Vesteinn and Colaprico, Antonio and Bertrand, Denis and Gibbs, David L and Weerasinghe, Amila and Cortés-Ciriano, Isidro and Chen, Feng and Yu, Lihua and Olsen, Catharina and Cherniack, Andrew D and Akbani, Rehan and Suphavilai, Chayaporn and Mills, Gordon B and Wyczalkowski, Matthew A and Vincent, Benjamin G and Hutter, Carolyn M and Hoadley, Katherine A and Shmulevich, llya and Lazar, Alexander J and Wheeler, David A and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Sofia, Heidi J and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Naresh, Rashi and Sun, Qiang and Wan, Yunhu and Wu, Ye and DeFreitas, Timothy and Frazer, Scott and Heiman, David I and Lin, Pei and Meier, Sam and Saksena, Gordon and Zhang, Hailei and Bernard, Brady and Chambwe, Nyasha and Leinonen, Kalle and Liu, Yuexin and Miller, Michael and Shmulevich, Ilya and Zhang, Wei and Broom, Bradley M and Hegde, Apurva M and Ju, Zhenlin and Kanchi, Rupa S and Korkut, Anil and Li, Jun and Liang, Han and Liu, Wenbin and Lu, Yiling and Ng, Kwok-Shing and Rao, Arvind and Ryan, Michael and Wang, Jing and Weinstein, John N and Zhang, Jiexin and Abeshouse, Adam and Armenia, Joshua and Chakravarty, Debyani and Gao, Jianjiong and Gross, Benjamin E and Kundra, Ritika and La, Konnor and Ladanyi, Marc and Luna, Augustin and Ochoa, Angelica and Phillips, Sarah M and Reznik, Ed and Schultz, Nikolaus and Sheridan, Robert and Sumer, S. Onur and Taylor, Barry S and Wang, Jioajiao and Zhang, Hongxin and Anur, Pavana and Wong, Christopher K and Hayes, D. Neil and Parker, Joel S and Wilkerson, Matthew D and Ally, Adrian and Balasundaram, Miruna and Bowlby, Reanne and Carlsen, Rebecca and Chuah, Eric and Lee, Darlene and Marra, Marco A and Moore, Richard A and Mungall, Karen and Sadeghi, Sara and Tam, Angela and Thiessen, Nina and Tse, Kane and Wong, Tina and ... and The Cancer Genome Atlas Research Network and Cancer Genome Atlas Res Network and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Cell (Cambridge), ISSN 0092-8674, 04/2018, Volume 173, Issue 2, pp. 305 - 320.e10
The Cancer Genome Atlas (TCGA) has catalyzed systematic characterization of diverse genomic alterations underlying human cancers. At this historic junction... 
cancer genomics | oncogenic process | cancer | omics | TCGA | Biochemistry, Genetics and Molecular Biology(all) | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Index Medicus | Cancer Genomics | Oncogenic process | Omics | Cancer
Journal Article