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Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. 2585 - 2585
Journal Article
Cancer Research, ISSN 0008-5472, 07/2018, Volume 78, Issue 13 Supplement, pp. LB-392 - LB-392
Journal Article
Frontiers in Microbiology, ISSN 1664-302X, 06/2018, Volume 9, pp. 1172 - 1172
An estimated 17% of cancers worldwide are associated with infectious causes. The extent and biological significance of viral presence/infection in actual tumor... 
Liver cancer | Next-generation sequencing | RNA-seq | Cancer immunology | Variant analysis | Viral detection | TCGA | READ ALIGNMENT | IDENTIFY | VIRUS | SEQUENCES | next-generation sequencing | cancer immunology | MICROBIOLOGY | variant analysis | CANCER | SOFTWARE | ENDOGENOUS RETROVIRUS K | DISEASE | HERV-K113 | liver cancer | viral detection | HEPATITIS-B
Journal Article
BMC CANCER, ISSN 1471-2407, 04/2019, Volume 19, Issue 1, pp. 357 - 357
Background: Osteosarcoma is the most common malignant bone tumor in children. Survival remains poor among histologically poor responders, and there is a need... 
SURVIVAL | PROGNOSTIC-FACTORS | Whole genome sequencing | Childhood cancers | TOXICITY | POLYMORPHISM | Drug resistance | IFOSFAMIDE | CHEMOTHERAPY | ETOPOSIDE | ONCOLOGY | Osteosarcoma | EXTREMITY | Genetics | EXPRESSION | Pharmacogenomics | Haplotypes | Usage | Genetic research | Genetic aspects | Research | Nucleotide sequencing | Drug therapy | DNA sequencing
Journal Article
Cancer Research, ISSN 0008-5472, 07/2018, Volume 78, Issue 13 Supplement, pp. 3426 - 3426
Journal Article
Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. 548 - 548
Journal Article
Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. 3568 - 3568
Journal Article
Cancer Research, ISSN 0008-5472, 07/2017, Volume 77, Issue 13 Supplement, pp. 2604 - 2604
Journal Article
by Costello, James C and Heiser, Laura M and Georgii, Elisabeth and Gönen, Mehmet and Menden, Michael P and Wang, Nicholas J and Bansal, Mukesh and Ammad-Ud-Din, Muhammad and Hintsanen, Petteri and Khan, Suleiman A and Mpindi, John-Patrick and Kallioniemi, Olli and Honkela, Antti and Aittokallio, Tero and Wennerberg, Krister and Collins, James J and Gallahan, Dan and Singer, Dinah and Saez-Rodriguez, Julio and Kaski, Samuel and Gray, Joe W and Stolovitzky, Gustavo and Abbuehl, Jean-Paul and Allen, Jeffrey and Altman, Russ B and Balcome, Shawn and Battle, Alexis and Bender, Andreas and Berger, Bonnie and Bernard, Jonathan and Bhattacharjee, Madhuchhanda and Bhuvaneshwar, Krithika and Bieberich, Andrew A and Boehm, Fred and Califano, Andrea and Chan, Christina and Chen, Beibei and Chen, Ting-Huei and Choi, Jaejoon and Coelho, Luis Pedro and Cokelaer, Thomas and Collins, James C and Creighton, Chad J and Cui, Jike and Dampier, Will and Davisson, V. Jo and De Baets, Bernard and Deshpande, Raamesh and DiCamillo, Barbara and Dundar, Murat and Duren, Zhana and Ertel, Adam and Fan, Haoyang and Fang, Hongbin and Gauba, Robinder and Gottlieb, Assaf and Grau, Michael and Gusev, Yuriy and Ha, Min Jin and Han, Leng and Harris, Michael and Henderson, Nicholas and Hejase, Hussein A and Homicsko, Krisztian and Hou, Jack P and Hwang, Woochang and IJzerman, Adriaan P and Karacali, Bilge and Keles, Sunduz and Kendziorski, Christina and Kim, Junho and Kim, Min and Kim, Youngchul and Knowles, David A and Koller, Daphne and Lee, Junehawk and Lee, Jae K and Lenselink, Eelke B and Li, Biao and Li, Bin and Li, Jun and Liang, Han and Ma, Jian and Madhavan, Subha and Mooney, Sean and Myers, Chad L and Newton, Michael A and Overington, John P and Pal, Ranadip and Peng, Jian and Pestell, Richard and Prill, Robert J and Qiu, Peng and Rajwa, Bartek and Sadanandam, Anguraj and Sambo, Francesco and Shin, Hyunjin and Song, Jiuzhou and Song, Lei and Sridhar, Arvind and ... and NCI DREAM Community
Nature Biotechnology, ISSN 1087-0156, 12/2014, Volume 32, Issue 12, pp. 1202 - 1212
Journal Article
Cancer Informatics, ISSN 1176-9351, 12/2017, Volume 16, pp. 1176935117746637 - 1176935117746637
The CINdex Bioconductor package addresses an important area of high-throughput genomic analysis. It calculates the chromosome instability (CIN) index, a novel... 
cancer genomics | copy number variation | genomic instability | DNA copy number | bioconductor | chromosome instability | Genomic analysis | Stability | Authorship | Copy number | Colorectal carcinoma | Values | Genomes | Stability analysis | Gene expression | Patients | Biological activity | Algorithms | Network analysis | Chromosomes | Deoxyribonucleic acid--DNA | Cancer | Tumors
Journal Article
The American Journal of Pathology, ISSN 0002-9440, 09/2019, Volume 189, Issue 9, pp. 1846 - 1862
The mammalian target of rapamycin (mTOR) and associated phosphatidylinositol 3-kinase/AKT/mTOR signaling pathway is commonly up-regulated in cancer, including... 
Journal Article
Cancer Research, ISSN 0008-5472, 07/2016, Volume 76, Issue 14 Supplement, pp. 1508 - 1508
Breast cancer is the most commonly diagnosed cancer in women. About 70 of all breast cancers are estrogen receptor alpha positive (ER) and are treated with... 
Journal Article
JOURNAL OF CLINICAL ONCOLOGY, ISSN 0732-183X, 05/2017, Volume 35, Issue 15_suppl, pp. e15630 - e15630
Conference Proceeding
Journal Article
Cancer Research, ISSN 0008-5472, 11/2015, Volume 75, Issue 22 Supplement 2, pp. B1 - B1-44
Journal Article
Computational and Structural Biotechnology Journal, ISSN 2001-0370, 2015, Volume 13, Issue C, pp. 64 - 74
Next generation sequencing (NGS) technologies produce massive amounts of data requiring a powerful computational infrastructure, high quality bioinformatics... 
Galaxy | Cloud computing | Translational research | Next generation sequencing | READ ALIGNMENT | RNA-SEQ | FORMAT | QUANTIFICATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENERATION | SEQUENCING DATA | MATHEMATICS AND COMPUTING | translational research | galaxy | cloud computing | next generation sequencing
Journal Article