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BMJ Open, ISSN 2044-6055, 05/2016, Volume 6, Issue 5, p. e011144
Journal Article
by Bultet, Lisandra Aguilar and Aguilar-Rodríguez, José and Ahrens, Christian H and Ahrné, Erik Lennart and Ai, Ni and Aimo, Lucila and Akalin, Altuna and Aleksiev, Tyanko and Alocci, Davide and Altenhoff, Adrian and Alves, Isabel and Ambrosini, Giovanna and Pedone, Pascale Anderle and Angelino, Paolo and Anisimova, Maria and Appel, Ron and Argoud-Puy, Ghislaine and Arnold, Konstantin and Arpat, Bulak and Artimo, Panu and Ascencao, Kelly and Auchincloss, Andrea and Axelsen, Kristian and Gerritsen, Vivienne Baillie and Bairoch, Amos and Bansal, Parit and Baratin, Delphine and Barbato, Alessandro and Barbié, Valérie and Barras, David and Barreiro, Maria and Barret, Sophie and Bastian, Frederic and Neto, Teresamanuela Batista and Baudis, Michael and Beaudoing, Emmanuel and Beckmann, Jacques S and Bekkar, Amel Kawter and Ben Hamida Cammoun, Leila and Benmohammed, Sara and Bernard, Madeleine and Bertelli, Claire and Bertoni, Martino and Bienert, Stefan and Bignucolo, Olivier and Bilbao, Aivett and Bilican, Adem and Blank, Diana and Blatter, Marie-Claude and Blum, Lorenz and Bocquet, Jocelyne and Boeckmann, Brigitte and Bolleman, Jerven Tjalling and Bordoli, Lorenza and Bosshard, Lars and Bouchet, Gerard and Bougueleret, Lydie and Boutet, Emmanuel and Bovigny, Christophe and Bratulic, Sinisa and Breuza, Lionel and Bridge, Alan James and Britan, Aurore and Brito, Francisco and Frazão, Josias Brito and Bruggmann, Rémy and Bucher, Philipp and Burdet, Frédéric and Burger, Lukas and Cabello, Elena Maria and Gomez, Ruben Martin Cabezon and Calderon, Sandra and Cannarozzi, Gina and Carl, Sarah and Casas, Cristina Casals and Catherinet, Sebastien and Périer, Rouayda Cavin and Charpilloz, Christophe and Chaskar, Prasad Datatray and Chen, Weihua and Pepe, Anush Chiappino and Chopard, Bastien and Chu, Hoi Yee and Civic, Natacha and Claassen, Manfred and Clottu, Sylvie and Colombo, Martino and Cosandier, Isabelle and Coudert, Elisabeth and Crespo, Isaac and Creus, Marc and Cuche, Béatrice and Cuendet, Michel A and Cusin, Isabelle and Daga, Neha and Daina, Antoine and Dauvillier, Jér Ôme and David, Fabrice and Davydov, Iakov and De Sa Ricca Manadelo Ferreira, Mariana and ... and SIB Swiss Inst Bioinformatics
Nucleic Acids Research, ISSN 0305-1048, 2016, Volume 44, Issue 1, pp. D27 - D37
The SIB Swiss Institute of Bioinformatics (www.isb-sib.ch) provides world-class bioinformatics databases, software tools, services and training to the... 
PROTEIN MODELS | QUALITY | REGULATORY SITES | LANDSCAPE | KNOWLEDGEBASE | ARCHIVE | BIOCHEMISTRY & MOLECULAR BIOLOGY | REPOSITORY | EXPRESSION DATA | TOOLS | PREDICTION | Database Issue
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2014, Volume 42, Issue 1, pp. W252 - W258
Protein structure homology modelling has become a routine technique to generate 3D models for proteins when experimental structures are not available. Fully... 
QUALITY | SINGLE | SCORE | RECOGNITION | PDBVIEWER | WEB | SERVER | BIOCHEMISTRY & MOLECULAR BIOLOGY | ENVIRONMENT | SECONDARY STRUCTURE | STRUCTURE PREDICTION | Protein Structure, Tertiary | Protein Structure, Quaternary | Models, Molecular | Software | Structural Homology, Protein | Internet | Evolution, Molecular
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2017, Volume 45, Issue 1, pp. D313 - D319
Journal Article
Methods in Molecular Biology, ISSN 1064-3745, 2019, Volume 1851, pp. 301 - 316
Proteins are subject to evolutionary forces that shape their three-dimensional structure to meet specific functional demands. The knowledge of the structure of... 
SWISS-MODEL | Oligomeric proteins | Homology modeling | Quaternary structure | Protein structure prediction | Model quality assessment | Model quality estimates | Sequence Homology, Amino Acid | Models, Molecular | Proteins - classification | Structural Homology, Protein | Proteins - chemistry | Computational Biology
Journal Article
Journal of Cerebral Blood Flow & Metabolism, ISSN 0271-678X, 2/2019, Volume 39, Issue 2, pp. 313 - 323
Lesion volume measurements with magnetic resonance imaging are widely used to assess outcome in rodent models of stroke. In this study, we improved a... 
brain edema | animal models | magnetic resonance imaging | Stroke | neuroanatomy | RAT | TEMPORAL EVOLUTION | QUANTIFICATION | ISCHEMIA | NEUROSCIENCES | VOXEL-BASED MORPHOMETRY | INFARCT VOLUME | CEREBRAL-ARTERY OCCLUSION | ENDOCRINOLOGY & METABOLISM | HEMATOLOGY | CHLORIDE | Original
Journal Article
ECS Transactions, ISSN 1938-5862, 05/2017, Volume 78, Issue 1, pp. 3089 - 3102
Conference Proceeding
Bioinformatics, ISSN 1367-4803, 03/2013, Volume 29, Issue 5, pp. 588 - 596
Journal Article
Journal of Chemical Theory and Computation, ISSN 1549-9618, 10/2012, Volume 8, Issue 10, pp. 3663 - 3670
We have implemented a method for the design of RNA sequences that should fold to arbitrary secondary structures. A popular energy model allows one to take the... 
MONTE-CARLO APPROACH | MOLECULAR-DYNAMICS | NOVO PROTEIN DESIGN | ENERGY MINIMIZATION | SEARCH | ALGORITHM | PHYSICS, ATOMIC, MOLECULAR & CHEMICAL | LAMBDA-DYNAMICS | CHEMISTRY, PHYSICAL | OPTIMIZATION | POTENTIALS | PREDICTION
Journal Article
European Journal of Forest Research, ISSN 1612-4669, 1/2012, Volume 131, Issue 1, pp. 165 - 176
Applications of flow models to tall plant canopies are limited, amongst other factors, by the lack of detailed information on vegetation structure. A method is... 
Life Sciences | Momentum flux | Forestry | Terrestrial laser scanning | Vegetation model | Plant Sciences | Drag coefficient | Plant Ecology | 2ND-ORDER CLOSURE | PINE FOREST | STATISTICS | MODEL | LARGE-EDDY SIMULATION | ADVECTION | TURBULENT-FLOW | PLANT CANOPIES | FORESTRY | 1ST-ORDER | Hydrology | Meteorological photography | Tundra ecology | Analysis | Parameter estimation | Wind power | 3-D graphics | Vegetation
Journal Article
Acta Crystallographica Section A Foundations and Advances, ISSN 2053-2733, 08/2014, Volume 70, Issue a1, pp. C491 - C491
Computational modeling and prediction of three-dimensional macromolecular structures and complexes from their sequence has been a long standing goal in... 
Journal Article