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Nature protocols, ISSN 1750-2799, 2009, Volume 4, Issue 8, pp. 1184 - 1191
.... We demonstrate how to use the computational environment R to integrate and jointly analyze experimental datasets, employing BioMart web services to provide the molecule mappings... 
DATABASE | BIOCHEMICAL RESEARCH METHODS | BIOCONDUCTOR | Cell Line | Humans | Databases, Genetic | Chromosome Mapping | Software | Genomics - methods | RNA, Messenger - metabolism | Cluster Analysis | Public software | Mapping | Bioconductor | Ensembl | Identifiers | BioMart | Data Integration
Journal Article
by Myers, Richard M and Stamatoyannopoulos, John and Snyder, Michael and Dunham, Ian and Hardison, Ross C and Bernstein, Bradley E and Gingeras, Thomas R and Kent, W. James and Birney, Ewan and Wold, Barbara and Crawford, Gregory E and Epstein, Charles B and Shoresh, Noam and Ernst, Jason and Mikkelsen, Tarjei S and Kheradpour, Pouya and Zhang, Xiaolan and Wang, Li and Issner, Robbyn and Coyne, Michael J and Durham, Timothy and Ku, Manching and Truong, Thanh and Ward, Lucas D and Altshuler, Robert C and Lin, Michael F and Kellis, Manolis and Davis, Carrie A and Kapranov, Philipp and Dobin, Alexander and Zaleski, Christopher and Schlesinger, Felix and Batut, Philippe and Chakrabortty, Sudipto and Jha, Sonali and Lin, Wei and Drenkow, Jorg and Wang, Huaien and Bell, Kim and Bell, Ian and Gao, Hui and Dumais, Erica and Dumais, Jacqueline and Antonarakis, Stylianos E and Ucla, Catherine and Borel, Christelle and Guigo, Roderic and Djebali, Sarah and Lagarde, Julien and Kingswood, Colin and Ribeca, Paolo and Sammeth, Micha and Alioto, Tyler and Merkel, Angelika and Tilgner, Hagen and Carninci, Piero and Hayashizaki, Yoshihide and Lassmann, Timo and Takahashi, Hazuki and Abdelhamid, Rehab F and Hannon, Gregory and Fejes, Katalin-Toth and Preall, Jonathan and Gordon, Assaf and Sotirova, Vihra and Reymond, Alexandre and Howald, Cedric and Graison, Emilie Aït Yahya and Chrast, Jacqueline and Ruan, Yijun and Ruan, Xiaoan and Shahab, Atif and Poh, Wan Ting and Wei, Chia-Lin and Furey, Terrence S and Boyle, Alan P and Sheffield, Nathan C and Song, Lingyun and Shibata, Yoichiro and Vales, Teresa and Winter, Deborah and Zhang, Zhancheng and London, Darin and Wang, Tianyuan and Keefe, Damian and Iyer, Vishwanath R and Lee, Bum-Kyu and McDaniell, Ryan M and Liu, Zheng and Battenhouse, Anna and Bhinge, Akshay A and Lieb, Jason D and Grasfeder, Linda L and Showers, Kimberly A and Giresi, Paul G and Kim, Seul K. C and Shestak, Christopher and Pauli, Florencia and Reddy, Timothy E and Gertz, Jason and ... and The ENCODE Project Consortium and ENCODE Project Consortium
PLoS biology, ISSN 1545-7885, 2011, Volume 9, Issue 4, p. e1001046
Journal Article
by Nene, V and Wortman, J. R and Lawson, D and Haas, B and Kodira, C and Tu, Z and Loftus, B and Xi, Z and Megy, K and Grabherr, M and Ren, Q and Zdobnov, E. M and Lobo, N. F and Campbell, K. S and Brown, S. E and Bonaldo, M. F and Zhu, J and Sinkins, S. P and Hogenkamp, D. G and Amedeo, P and Arensburger, P and Atkinson, P. W and Bidwell, S and Biedler, J and Birney, E and Bruggner, R. V and Costas, J and Coy, M. R and Crabtree, J and Crawford, M and deBruyn, B and DeCaprio, D and Eiglmeier, K and Eisenstadt, E and El-Dorry, H and Gelbart, W. M and Gomes, S. L and Hammond, M and Hannick, L. I and Hogan, J. R and Holmes, M. H and Jaffe, D and Johnston, J. S and Kennedy, R. C and Koo, H and Kravitz, S and Kriventseva, E. V and Kulp, D and LaButti, K and Lee, E and Li, S and Lovin, D. D and Mao, C and Mauceli, E and Menck, C. F. M and Miller, J. R and Montgomery, P and Mori, A and Nascimento, A. L and Naveira, H. F and Nusbaum, C and O'Leary, S and Orvis, J and Pertea, M and Quesneville, H and Reidenbach, K. R and Rogers, Y.-H and Roth, C. W and Schneider, J. R and Schatz, M and Shumway, M and Stanke, M and Stinson, E. O and Tubio, J. M. C and VanZee, J. P and Verjovski-Almeida, S and Werner, D and White, O and Wyder, S and Zeng, Q and Zhao, Q and Zhao, Y and Hill, C. A and Raikhel, A. S and Soares, M. B and Knudson, D. L and Lee, N. H and Galagan, J and Salzberg, S. L and Paulsen, I. T and Dimopoulos, G and Collins, F. H and Birren, B and Fraser-Liggett, C. M and Severson, D. W
Science (American Association for the Advancement of Science), ISSN 1095-9203, 2007, Volume 316, Issue 5832, pp. 1718 - 1723
We present a draft sequence of the genome of Aedes aegypti, the primary vector for yellow fever and dengue fever, which at ∼1376 million base pairs is about 5... 
Transposons | Genetic vectors | Introns | Genes | DNA | Genomes | Insect vectors | Chromosomes | Insect genetics | Mosquitos | Research Article | ORGANIZATION | EVOLUTION | YELLOW-FEVER MOSQUITO | DROSOPHILA-MELANOGASTER | MULTIDISCIPLINARY SCIENCES | SUPERFAMILY | INSECTS | ANOPHELES-GAMBIAE | RECEPTORS | EXPRESSION | TRANSPOSONS | Anopheles - metabolism | Multigene Family | Species Specificity | Anopheles - genetics | Humans | Synteny | Molecular Sequence Data | Male | Drosophila melanogaster - genetics | Insect Vectors - metabolism | Yellow Fever - transmission | Aedes - metabolism | Sex Determination Processes | Membrane Transport Proteins - genetics | Base Sequence | Female | Transcription, Genetic | Genome, Insect | Genes, Insect | Yellow Fever - prevention & control | Insect Proteins - genetics | Arboviruses | Protein Structure, Tertiary - genetics | Sex Characteristics | Aedes - genetics | Sequence Analysis, DNA | DNA Transposable Elements | Dengue - prevention & control | Animals | Insect Vectors - genetics | Dengue - transmission | Physiological aspects | Aedes albopictus | Genetic aspects | Health aspects | Aedes | Comparative studies | Viruses | Disease transmission | Insects | Epidemiology | Genomics | Life Sciences | Anopheles gambiae | Protein Structure, Tertiary | Insect Vectors | Dengue | Biochemistry, Molecular Biology | Sex Determination (Genetics) | Membrane Transport Proteins | Yellow Fever | Drosophila melanogaster | Insect Proteins
Journal Article
by Birney, Ewan and Stamatoyannopoulos, John A and Dutta, Anindya and Guigó, Roderic and Gingeras, Thomas R and Margulies, Elliott H and Weng, Zhiping and Snyder, Michael and Dermitzakis, Emmanouil T and Thurman, Robert E and Kuehn, Michael S and Taylor, Christopher M and Neph, Shane and Koch, Christoph M and Asthana, Saurabh and Malhotra, Ankit and Adzhubei, Ivan and Greenbaum, Jason A and Andrews, Robert M and Flicek, Paul and Boyle, Patrick J and Cao, Hua and Carter, Nigel P and Clelland, Gayle K and Davis, Sean and Day, Nathan and Dhami, Pawandeep and Dillon, Shane C and Dorschner, Michael O and Fiegler, Heike and Giresi, Paul G and Goldy, Jeff and Hawrylycz, Michael and Haydock, Andrew and Humbert, Richard and James, Keith D and Johnson, Brett E and Johnson, Ericka M and Frum, Tristan T and Rosenzweig, Elizabeth R and Karnani, Neerja and Lee, Kirsten and Lefebvre, Gregory C and Navas, Patrick A and Neri, Fidencio and Parker, Stephen C. J and Sabo, Peter J and Sandstrom, Richard and Shafer, Anthony and Vetrie, David and Weaver, Molly and Wilcox, Sarah and Yu, Man and Collins, Francis S and Dekker, Job and Lieb, Jason D and Tullius, Thomas D and Crawford, Gregory E and Sunyaev, Shamil and Noble, William S and Dunham, Ian and Denoeud, France and Reymond, Alexandre and Kapranov, Philipp and Rozowsky, Joel and Zheng, Deyou and Castelo, Robert and Frankish, Adam and Harrow, Jennifer and Ghosh, Srinka and Sandelin, Albin and Hofacker, Ivo L and Baertsch, Robert and Keefe, Damian and Dike, Sujit and Cheng, Jill and Hirsch, Heather A and Sekinger, Edward A and Lagarde, Julien and Abril, Josep F and Shahab, Atif and Flamm, Christoph and Fried, Claudia and Hackermüller, Jörg and Hertel, Jana and Lindemeyer, Manja and Missal, Kristin and Tanzer, Andrea and Washietl, Stefan and Korbel, Jan and Emanuelsson, Olof and Pedersen, Jakob S and Holroyd, Nancy and Taylor, Ruth and Swarbreck, David and Matthews, Nicholas and Dickson, Mark C and Thomas, Daryl J and Weirauch, Matthew T and Gilbert, James and ... and The ENCODE Project Consortium and ENCODE Project Consortium and Baylor College of Medicine Human Genome Sequencing Center and Washington University Genome Sequencing Center and Children's Hospital Oakland Research Institute and NISC Comparative Sequencing Program and Broad Institute
Nature (London), ISSN 1476-4687, 2007, Volume 447, Issue 7146, pp. 799 - 816
Journal Article
by Gibbs, R. A and Rogers, J and Katze, M. G and Bumgarner, R and Weinstock, G. M and Mardis, E. R and Remington, K. A and Strausberg, R. L and Venter, J. C and Wilson, R. K and Batzer, M. A and Bustamante, C. D and Eichler, E. E and Hahn, M. W and Hardison, R. C and Makova, K. D and Miller, W and Milosavljevic, A and Palermo, R. E and Siepel, A and Sikela, J. M and Attaway, T and Bell, S and Bernard, K. E and Buhay, C. J and Chandrabose, M. N and Dao, M and Davis, C and Delehaunty, K. D and Ding, Y and Dinh, H. H and Dugan-Rocha, S and Fulton, L. A and Gabisi, R. A and Garner, T. T and Godfrey, J and Hawes, A. C and Hernandez, J and Hines, S and Holder, M and Hume, J and Jhangiani, S. N and Joshi, V and Khan, Z. M and Kirkness, E. F and Cree, A and Fowler, R. G and Lee, S and Lewis, L. R and Li, Z and Liu, Y.-s and Moore, S. M and Muzny, D and Nazareth, L. V and Ngo, D. N and Okwuonu, G. O and Pai, G and Parker, D and Paul, H. A and Pfannkoch, C and Pohl, C. S and Rogers, Y.-H and Ruiz, S. J and Sabo, A and Santibanez, J and Schneider, B. W and Smith, S. M and Sodergren, E and Svatek, A. F and Utterback, T. R and Vattathil, S and Warren, W and White, C. S and Chinwalla, A. T and Feng, Y and Halpern, A. L and Hillier, L. W and Huang, X and Minx, P and Nelson, J. O and Pepin, K. H and Qin, X and Sutton, G. G and Venter, E and Walenz, B. P and Wallis, J. W and Worley, K. C and Yang, S.-P and Jones, S. M and Marra, M. A and Rocchi, M and Schein, J. E and Baertsch, R and Clarke, L and Csuros, M and Glasscock, J and Harris, R. A and Havlak, P and Jackson, A. R and Jiang, H and ... and Rhesus Macaque Genome Sequencing and Analysis Consortium and Rhesus Macaque Genome Sequencing Consortium
Science (American Association for the Advancement of Science), ISSN 1095-9203, 2007, Volume 316, Issue 5822, pp. 222 - 234
Journal Article