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Bioinformatics, ISSN 1367-4803, 03/2018, Volume 34, Issue 5, pp. 725 - 731
Abstract Motivation Sequencing of human genomes is now routine, and assembly of shotgun reads is increasingly feasible. However, assemblies often fail to... 
LONG READS | ALIGNMENT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | INFORMATION | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Original Papers
Journal Article
Bioinformatics, ISSN 1367-4803, 04/2017, Volume 33, Issue 8, pp. 1261 - 1270
Identifying overlaps between error-prone long reads, specifically those from Oxford Nanopore Technologies (ONT) and Pacific Biosciences (PB), is essential for... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCING READS | NONHYBRID | COMPLEXITY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | LOCAL ALIGNMENT | GENOME | DISCOVERY | HYBRID | Software | Algorithms | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | Review
Journal Article
Nature, ISSN 0028-0836, 08/2011, Volume 476, Issue 7360, pp. 298 - 303
Journal Article
Journal Article
Genome Research, ISSN 1088-9051, 12/2011, Volume 21, Issue 12, pp. 2224 - 2241
Journal Article
Bioinformatics (Oxford, England), ISSN 1367-4803, 2014, Volume 30, Issue 23, pp. 3402 - 3404
Large datasets can be screened for sequences from a specific organism, quickly and with low memory requirements, by a data structure that supports time-and... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Mice | Software | Algorithms | Animals | Sequence Analysis, DNA - methods | Humans | Screening | Platforms | Queries | Organisms | Bioinformatics | Computer programs | Applications Notes
Journal Article
GigaScience, ISSN 2047-217X, 04/2017, Volume 6, Issue 4, p. 1
Background: The MinION sequencing instrument from Oxford Nanopore Technologies (ONT) produces long read lengths from single-molecule sequencing - valuable... 
Statistical modeling | Nanopore sequencing | Sequence read simulation | NanoSim | nanopore sequencing | statistical modeling | MULTIDISCIPLINARY SCIENCES | sequence read simulation | Computational Biology - methods | Software | Algorithms | Genomics - methods | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA
Journal Article
by Bradnam, Keith R and Fass, Joseph N and Alexandrov, Anton and Baranay, Paul and Bechner, Michael and Birol, Inanç and Boisvert, Sébastien and Chapman, Jarrod A and Chapuis, Guillaume and Chikhi, Rayan and Chitsaz, Hamidreza and Chou, Wen-Chi and Corbeil, Jacques and Fabbro, Cristian Del and Docking, Roderick and Durbin, Richard and Earl, Dent and Emrich, Scott and Fedotov, Pavel and Fonseca, Nuno A and Ganapathy, Ganeshkumar and Gibbs, Richard A and Gnerre, Sante and Godzaridis, Élénie and Goldstein, Steve and Haimel, Matthias and Hall, Giles and Haussler, David and Hiatt, Joseph B and Ho, Isaac Y and Howard, Jason and Hunt, Martin and Jackman, Shaun D and Jaffe, David B and Jarvis, Erich D and Jiang, Huaiyang and Kazakov, Sergey and Kersey, Paul J and Kitzman, Jacob O and Knight, James R and Koren, Sergey and Lam, Tak-Wah and Lavenier, Dominique and Laviolette, François and Li, Yingrui and Li, Zhenyu and Liu, Binghang and Liu, Yue and Luo, Ruibang and MacCallum, Iain and MacManes, Matthew D and Maillet, Nicolas and Melnikov, Sergey and Naquin, Delphine and Ning, Zemin and Otto, Thomas D and Paten, Benedict and Paulo, Octávio S and Phillippy, Adam M and Pina-Martins, Francisco and Place, Michael and Przybylski, Dariusz and Qin, Xiang and Qu, Carson and Ribeiro, Filipe J and Richards, Stephen and Rokhsar, Daniel S and Ruby, J Graham and Scalabrin, Simone and Schatz, Michael C and Schwartz, David C and Sergushichev, Alexey and Sharpe, Ted and Shaw, Timothy I and Shendure, Jay and Shi, Yujian and Simpson, Jared T and Song, Henry and Tsarev, Fedor and Vezzi, Francesco and Vicedomini, Riccardo and Vieira, Bruno M and Wang, Jun and Worley, Kim C and Yin, Shuangye and Yiu, Siu-Ming and Yuan, Jianying and Zhang, Guojie and Zhang, Hao and Zhou, Shiguo and Korf, Ian F and Science for Life Laboratory, SciLifeLab and KTH and Centra
GigaScience, ISSN 2047-217X, 2013, Volume 2, Issue 1, p. 10
Journal Article