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by Abeshouse, Adam and Ahn, Jaeil and Akbani, Rehan and Ally, Adrian and Amin, Samirkumar and Andry, Christopher D and Annala, Matti and Aprikian, Armen and Armenia, Joshua and Arora, Arshi and Auman, J. Todd and Balasundaram, Miruna and Balu, Saianand and Barbieri, Christopher E and Bauer, Thomas and Benz, Christopher C and Bergeron, Alain and Beroukhim, Rameen and Berrios, Mario and Bivol, Adrian and Bodenheimer, Tom and Boice, Lori and Bootwalla, Moiz S and Borges dos Reis, Rodolfo and Boutros, Paul C and Bowen, Jay and Bowlby, Reanne and Boyd, Jeffrey and Bradley, Robert K and Breggia, Anne and Brimo, Fadi and Bristow, Christopher A and Brooks, Denise and Broom, Bradley M and Bryce, Alan H and Bubley, Glenn and Burks, Eric and Butterfield, Yaron S.N and Button, Michael and Canes, David and Carlotti, Carlos G and Carlsen, Rebecca and Carmel, Michel and Carroll, Peter R and Carter, Scott L and Cartun, Richard and Carver, Brett S and Chan, June M and Chang, Matthew T and Chen, Yu and Cherniack, Andrew D and Chevalier, Simone and Chin, Lynda and Cho, Juok and Chu, Andy and Chuah, Eric and Chudamani, Sudha and Cibulskis, Kristian and Ciriello, Giovanni and Clarke, Amanda and Cooperberg, Matthew R and Corcoran, Niall M and Costello, Anthony J and Cowan, Janet and Crain, Daniel and Curley, Erin and David, Kerstin and Demchok, John A and Demichelis, Francesca and Dhalla, Noreen and Dhir, Rajiv and Doueik, Alexandre and Drake, Bettina and Dvinge, Heidi and Dyakova, Natalya and Felau, Ina and Ferguson, Martin L and Frazer, Scott and Freedland, Stephen and Fu, Yao and Gabriel, Stacey B and Gao, Jianjiong and Gardner, Johanna and Gastier-Foster, Julie M and Gehlenborg, Nils and Gerken, Mark and Gerstein, Mark B and Getz, Gad and Godwin, Andrew K and Gopalan, Anuradha and Graefen, Markus and Graim, Kiley and Gribbin, Thomas and Guin, Ranabir and Gupta, Manaswi and Hadjipanayis, Angela and Haider, Syed and Hamel, Lucie and Hayes, D. Neil and Heiman, David I and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell, ISSN 0092-8674, 11/2015, Volume 163, Issue 4, pp. 1011 - 1025
Journal Article
by Hill, Steven M and Heiser, Laura M and Cokelaer, Thomas and Linger, Michael and Nesser, Nicole K and Carlin, Daniel E and Zhang, Yang and Sokolov, Artem and Paull, Evan O and Wong, Chris K and Graim, Kiley and Bivol, Adrian and Wang, Haizhou and Zhu, Fan and Afsari, Bahman and Danilova, Ludmila V and Favorov, Alexander V and Lee, Wai Shing and Taylor, Dane and Hu, Chenyue W and Long, Byron L and Noren, David P and Bisberg, Alexander J and Mills, Gordon B and Gray, Joe W and Kellen, Michael and Norman, Thea and Friend, Stephen and Qutub, Amina A and Fertig, Elana J and Guan, Yuanfang and Song, Mingzhou and Stuart, Joshua M and Spellman, Paul T and Koeppl, Heinz and Stolovitzky, Gustavo and Saez-Rodriguez, Julio and Mukherjee, Sach and Al-Ouran, Rami and Anton, Bernat and Arodz, Tomasz and Sichani, Omid Askari and Bagheri, Neda and Berlow, Noah and Bohler, Anwesha and Bonet, Jaume and Bonneau, Richard and Budak, Gungor and Bunescu, Razvan and Caglar, Mehmet and Cai, Binghuang and Cai, Chunhui and Carlon, Azzurra and Chen, Lujia and Ciaccio, Mark F and Cooper, Gregory and Coort, Susan and Creighton, Chad J and Daneshmand, Seyed-Mohammad-Hadi and De La Fuente, Alberto and Di Camillo, Barbara and Dutta-Moscato, Joyeeta and Emmett, Kevin and Evelo, Chris and Fassia, Mohammad-Kasim H and Finotello, Francesca and Finkle, Justin D and Gao, Xi and Garcia-Garcia, Javier and Ghosh, Samik and Giaretta, Alberto and Großeholz, Ruth and Guinney, Justin and Hafemeister, Christoph and Hahn, Oliver and Haider, Saad and Hase, Takeshi and Hodgson, Jay and Hoff, Bruce and Hsu, Chih Hao and Hu, Ying and Huang, Xun and Jalili, Mahdi and Jiang, Xia and Kacprowski, Tim and Kaderali, Lars and Kang, Mingon and Kannan, Venkateshan and Kikuchi, Kaito and Kim, Dong-Chul and Kitano, Hiroaki and Knapp, Bettina and Komatsoulis, George and Krämer, Andreas and Kursa, Miron Bartosz and Kutmon, Martina and Li, Yichao and Liang, Xiaoyu and Liu, Zhaoqi and Liu, Yu and ... and HPN-DREAM Consortium and The HPN-DREAM Consortium
Nature Methods, ISSN 1548-7091, 03/2016, Volume 13, Issue 4, pp. 310 - 322
Journal Article
PLoS ONE, ISSN 1932-6203, 12/2017, Volume 12, Issue 12, pp. e0170340 - e0170340
We introduce a novel method called Prophetic Granger Causality (PGC) for inferring gene regulatory networks (GRNs) from protein-level time series data. The... 
TOPOLOGY | INHIBITION | MODELS | PATHWAY | MULTIDISCIPLINARY SCIENCES | ALGORITHM | COEXPRESSION NETWORK | YAP | EXPRESSION | DISCOVERY | REVEALS | Genetic regulation | Research | Economic models | Genes | Time series | Breast cancer | Regression analysis | Kinases | Datasets | Wiring | Proteins | Engineering | Bioinformatics | Methods | Cancer | Tumors | Index Medicus
Journal Article
Cancer Research, ISSN 0008-5472, 11/2015, Volume 75, Issue 22 Supplement 1, pp. A2 - A2-64
Journal Article
Cancer Research, ISSN 0008-5472, 11/2015, Volume 75, Issue 22 Supplement 2, pp. B1 - B1-37
Journal Article
Cancer Research, ISSN 0008-5472, 10/2014, Volume 74, Issue 19 Supplement, pp. 4177 - 4177
Journal Article
Cancer Research, ISSN 0008-5472, 11/2015, Volume 75, Issue 22 Supplement 2, pp. PR02 - PR02
Journal Article
Cancer Research, ISSN 0008-5472, 11/2015, Volume 75, Issue 22 Supplement 1, pp. PR10 - PR10
Journal Article
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, ISSN 2153-4063, 2013, Volume 2013, pp. 26 - 26
Many tools have been developed for prediction of the function or disease association of genes and proteins, and this continues to be a highly active area of... 
Journal Article
by Gönen, Mehmet and Weir, Barbara A and Cowley, Glenn S and Vazquez, Francisca and Guan, Yuanfang and Jaiswal, Alok and Karasuyama, Masayuki and Uzunangelov, Vladislav and Wang, Tao and Tsherniak, Aviad and Howell, Sara and Marbach, Daniel and Hoff, Bruce and Norman, Thea C and Airola, Antti and Bivol, Adrian and Bunte, Kerstin and Carlin, Daniel and Chopra, Sahil and Deran, Alden and Ellrott, Kyle and Gopalacharyulu, Peddinti and Graim, Kiley and Kaski, Samuel and Khan, Suleiman A and Newton, Yulia and Ng, Sam and Pahikkala, Tapio and Paull, Evan and Sokolov, Artem and Tang, Hao and Tang, Jing and Wennerberg, Krister and Xie, Yang and Zhan, Xiaowei and Zhu, Fan and Afsari, Bahman and Aittokallio, Tero and Boehm, Jesse S and Chang, Yu-Chuan and Chen, Tenghui and Chong, Zechen and Elmarakeby, Haitham and Fertig, Elana J and Gonçalves, Emanuel and Gong, Pinghua and Hafemeister, Christoph and Hahn, William C and Heath, Lenwood and Kędziorski, Łukasz and Khemka, Niraj and King, Erh-kan and Lauria, Mario and Liu, Mark and Machado, Daniel and Mamitsuka, Hiroshi and Margolin, Adam A and Mazurkiewicz, Mateusz and Menden, Michael P and Migacz, Szymon and Nie, Zhi and Praveen, Paurush and Priami, Corrado and Rizzetto, Simone and Rocha, Miguel and Root, David E and Rudd, Cameron and Rudnicki, Witold R and Saez-Rodriguez, Julio and Song, Lei and Stolovitzky, Gustavo and Stuart, Joshua M and Sun, Duanchen and Szalai, Bence and Wang, Difei and Wu, Ling-yun and Xiao, Guanghua and Ye, Jieping and Ye, Yuting and Zhou, Wanding and Broad-DREAM Community
Cell Systems, ISSN 2405-4712, 01/2017, Volume 5, Issue 5, pp. 485 - 497.e3
We report the results of a DREAM challenge designed to predict relative genetic essentialities based on a novel dataset testing 98,000 shRNAs against 149... 
Journal Article
The present invention is directed toward a system, method, and a computer-readable medium for efficiently loading data into memory in order to scan the data... 
The present invention is directed toward a system, method, and a computer-readable medium for efficiently loading data into memory in order to scan the data... 
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