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1. Full Text Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities
by Nicholas A. Bokulich and David A. Mills
Applied and Environmental Microbiology, ISSN 0099-2240, 04/2013, Volume 79, Issue 8, pp. 2519 - 2526
Life Sciences & Biomedicine | Microbiology | Biotechnology & Applied Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | DNA, Intergenic | DNA, Fungal - analysis | Polymerase Chain Reaction | DNA, Fungal - chemistry | High-Throughput Nucleotide Sequencing | DNA Primers | Fungi - growth & development | Fungi - genetics | Sequence Analysis, DNA | Nucleic Acid Amplification Techniques | Polymerase chain reaction | Usage | Research | Primers (Molecular genetics) | Microbial colonies | Fungi | Yeast | Fermentation | Nonnative species | Index Medicus | Adoption | Methods
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2. Full Text Facility-Specific “House” Microbiome Drives Microbial Landscapes of Artisan Cheesemaking Plants
by Nicholas A. Bokulich and David A. Mills
Applied and Environmental Microbiology, ISSN 0099-2240, 09/2013, Volume 79, Issue 17, pp. 5214 - 5223
Life Sciences & Biomedicine | Microbiology | Biotechnology & Applied Microbiology | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Cheese - microbiology | Industrial Microbiology | Bacteria - isolation & purification | Environmental Microbiology | Fungi - classification | Biota | Bacteria - classification | Fungi - isolation & purification | Fermentation | Microbiota (Symbiotic organisms) | Analysis | Organisms | Cheese | Index Medicus | Adaptations | Food Microbiology
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3. Full Text The Microbiology of Malting and Brewing
by Nicholas A. Bokulich and Charles W. Bamforth
Microbiology and Molecular Biology Reviews, ISSN 1092-2172, 06/2013, Volume 77, Issue 2, pp. 157 - 172
Life Sciences & Biomedicine | Microbiology | Science & Technology | Genome, Fungal | Saccharomyces - metabolism | Phylogeny | Fermentation | Beer - microbiology | Saccharomyces - classification | Saccharomyces - genetics | Hordeum - microbiology | Brewing | Genetic aspects | Research | Yeast fungi | Yeast | Quality control | Beer | Index Medicus | Reviews
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4. Full Text Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
by Bokulich, Nicholas A and Subramanian, Sathish and Faith, Jeremiah J and Gevers, Dirk and Gordon, Jeffrey I and Knight, Rob and Mills, David A and Caporaso, J Gregory
Nature methods, ISSN 1548-7091, 01/2013, Volume 10, Issue 1, pp. 57 - 59
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Biodiversity | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | Humans | Quality Control | Measurement | Microbiological research | Innovations | Nucleotide sequencing | Methods | Biological diversity | DNA sequencing | Microbiology | Taxonomy | Index Medicus
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5. Full Text Next-generation approaches to the microbial ecology of food fermentations
by Bokulich, Nicholas A and Mills, David A
BMB reports, ISSN 1976-6696, 07/2012, Volume 45, Issue 7, pp. 377 - 389
Food fermentation | Molecular profiling tools | TRFLP | Next-generation sequencing | Microbial community profiling | Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Fermentation | Electrophoresis, Polyacrylamide Gel | Food Microbiology | Polymerase Chain Reaction
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6. Full Text Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin
by Bokulich, Nicholas A and Kaehler, Benjamin D and Rideout, Jai Ram and Dillon, Matthew and Bolyen, Evan and Knight, Rob and Huttley, Gavin A and Gregory Caporaso, J
Microbiome, ISSN 2049-2618, 05/2018, Volume 6, Issue 1, pp. 90 - 90
Sequence Alignment - methods | Base Sequence - genetics | Algorithms | Microbiota - genetics | Computer Simulation | RNA, Ribosomal, 16S - genetics | Software | DNA, Intergenic - genetics | Bacteria - genetics | Fungi - genetics | Machine Learning | Benchmarks | RNA | Genes | Analysis | Machine learning | Index Medicus
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7. Full Text Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
by Dominguez-Bello, Maria G and De Jesus-Laboy, Kassandra M and Shen, Nan and Cox, Laura M and Amir, Amnon and Gonzalez, Antonio and Bokulich, Nicholas A and Song, Se Jin and Hoashi, Marina and Rivera-Vinas, Juana I and Mendez, Keimari and Knight, Rob and Clemente, Jose C
Nature medicine, ISSN 1078-8956, 03/2016, Volume 22, Issue 3, pp. 250 - 253
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Cell Biology | Research & Experimental Medicine | Lactobacillus - genetics | Skin - microbiology | Humans | Gastrointestinal Microbiome | Male | Bacteroides - genetics | Pregnancy | Microbiota | Pilot Projects | Mouth - microbiology | Delivery, Obstetric | Female | Vagina - microbiology | Cesarean Section - methods | Longitudinal Studies | Metagenome | Infant, Newborn | Infants (Newborn) | Physiological aspects | Research | Microbiota (Symbiotic organisms) | Childbirth | Microbiology | Cesarean section | Metabolic disorders | Childbirth & labor | Index Medicus
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8. Full Text Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
by Nicholas A. Bokulich and John H. Thorngate and Paul M. Richardson and David A. Mills
Proceedings of the National Academy of Sciences - PNAS, ISSN 0027-8424, 1/2014, Volume 111, Issue 1, pp. 13 - 13
PNAS Plus: Significance Statements | Metagenomics | Agriculture | Next-generation sequencing | Viticulture | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Geography | Wine - microbiology | Climate | Species Specificity | Saccharomyces cerevisiae - genetics | Genomics | Vitis - microbiology | Vitis - physiology | Agriculture - methods | Phylogeny | Biodiversity | Fermentation | Saccharomyces - genetics | Sequence Analysis, DNA | Food Microbiology | Environment | Wines | Bacteria | Berries | Dispersal | Environmental conditions | Index Medicus | agriculture | Biological Sciences | viticulture | PNAS Plus | next-generation sequencing | metagenomics
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