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1. Full Text Mass spectrometry based biomarker discovery, verification, and validation – Quality assurance and control of protein biomarker assays
by Parker, Carol E and Borchers, Christoph H
Molecular oncology, ISSN 1574-7891, 06/2014, Volume 8, Issue 4, pp. 840 - 858
Biomarker discovery | Validation | Targeted proteomics | Multiple reaction monitoring | Plasma or serum | Biomarkers | Verification | Selected reaction monitoring | Mass spectrometry | Cancer | Life Sciences & Biomedicine | Oncology | Science & Technology | Genetic Association Studies - standards | Mass Spectrometry - standards | Humans | Genetic Association Studies - methods | Neoplasm Proteins - metabolism | Biomarkers, Tumor - isolation & purification | Validation Studies as Topic | Neoplasm Proteins - isolation & purification | Proteomics - standards | Biomarkers, Tumor - metabolism | Proteomics - methods | Mass Spectrometry - methods | Quality Control | Proteins | Usage | Quality control | Immunoassay | Costs | Disease | Peptides | Pipelines | Therapeutic applications | Mass spectroscopy | Genomes | Quantitation | Studies | Quality assurance | Medical prognosis | Proteomics | Scientific imaging | Tumors | Index Medicus | Reviews | Review
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2. Full Text Crosslinking combined with mass spectrometry for structural proteomics
by Petrotchenko, Evgeniy V and Borchers, Christoph H
Mass spectrometry reviews, ISSN 0277-7037, 11/2010, Volume 29, Issue 6, pp. 862 - 876
protein structure | protein interactions | crosslinkers | mass spectrometry | protein complexes | crosslinking | peptide crosslinks | Spectroscopy | Technology | Science & Technology | Fundamental and applied biological sciences. Psychology | Proteins | Biological and medical sciences | General aspects, investigation methods | Analytical, structural and metabolic biochemistry | Proteins - genetics | Data Interpretation, Statistical | Cross-Linking Reagents - chemistry | Peptides - chemistry | Humans | Mass Spectrometry - trends | Protein Conformation | Proteins - chemistry | Proteomics - methods | Mass Spectrometry - methods | Mass spectroscopy | Ions | Scientific imaging | Mass spectrometry | Reagents | Proteomics | Index Medicus
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3. Full Text An isotope-labeled chemical derivatization method for the quantitation of short-chain fatty acids in human feces by liquid chromatography–tandem mass spectrometry
by Han, Jun and Lin, Karen and Sequeira, Carita and Borchers, Christoph H
Analytica chimica acta, ISSN 0003-2670, 01/2015, Volume 854, pp. 86 - 94
Chemical derivatization | Short-chain fatty acid | Ultrahigh performance liquid chromatography–multiple-reaction monitoring mass spectrometry | 3-Nitrophenylhydrazine | Isotope labeling | Ultrahigh performance liquid chromatography-multiple-reaction monitoring mass spectrometr | Physical Sciences | Chemistry | Chemistry, Analytical | Science & Technology | Tandem Mass Spectrometry | Limit of Detection | Reproducibility of Results | Feces - chemistry | Humans | Isotope Labeling | Calibration | Chromatography, Liquid - methods | Fatty Acids, Volatile - analysis | Liquid chromatography | Mass spectrometry | Fatty acids | Methods | Index Medicus | Diets | Human | Liquids | Mathematical analysis | Homeostasis | Feces | Metabolism | Chromatography
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4. Full Text ICC-CLASS: Isotopically-coded cleavable crosslinking analysis software suite
by Petrotchenko, Evgeniy V and Borchers, Christoph H
BMC bioinformatics, ISSN 1471-2105, 01/2010, Volume 11, Issue 1, pp. 64 - 64
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | Isotopes - chemistry | Cross-Linking Reagents - chemistry | Peptides - chemistry | Databases, Protein | Mass Spectrometry | Isotope Labeling | Software | Proteins - chemistry | Proteomics - methods | Proteins | Crosslinking | Usage | Research | Mass spectrometry | Applications software | Analytical chemistry | Automation | Algorithms | Proteomics | Colleges & universities | Technological change | Genomes | Experiments | Programming languages | Molecular weight | Index Medicus
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5. Full Text Metabolic Profiling of Bile Acids in Human and Mouse Blood by LC–MS/MS in Combination with Phospholipid-Depletion Solid-Phase Extraction
by Han, Jun and Liu, Yang and Wang, Renxue and Yang, Juncong and Ling, Victor and Borchers, Christoph H
Analytical chemistry (Washington), ISSN 0003-2700, 01/2015, Volume 87, Issue 2, pp. 1127 - 1136
Physical Sciences | Chemistry | Chemistry, Analytical | Science & Technology | Bile Acids and Salts - blood | Fasting - physiology | Humans | Male | ATP Binding Cassette Transporter, Sub-Family B - physiology | Healthy Volunteers | Metabolomics - methods | Mice, Knockout | Homozygote | Animals | Phospholipids - isolation & purification | Solid Phase Extraction - methods | Female | Mice | Chromatography, Liquid - methods | Tandem Mass Spectrometry - methods | Plasma | Extraction processes | Biochemistry | Biological assays | Mass spectrometry | Chromatography | Bile | Index Medicus | Human | Analytical chemistry | Ionization | Extraction | Liquid chromatography | Serums | Blood
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6. Full Text Histone demethylation by a family of JmjC domain-containing proteins
by Borchers, Christoph H and Fang, Jia and Tempst, Paul and Warren, Maria E and Tsukada, Yu-ichi and Zhang, Yi and Erdjument-Bromage, Hediye
Nature, ISSN 0028-0836, 02/2006, Volume 439, Issue 7078, pp. 811 - 816
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Chromatin. Chromosome | Molecular and cellular biology | Molecular genetics | Protein Structure, Tertiary | Oxidoreductases, N-Demethylating - genetics | Histones - chemistry | Humans | Substrate Specificity | Oxidoreductases, N-Demethylating - classification | Amino Acid Motifs | Oxidoreductases, N-Demethylating - chemistry | F-Box Proteins | Formaldehyde - metabolism | Succinic Acid - metabolism | Conserved Sequence | Cell Extracts | HeLa Cells | Histones - metabolism | Methylation | Oxidoreductases, N-Demethylating - metabolism | Jumonji Domain-Containing Histone Demethylases | Saccharomyces cerevisiae | Index Medicus
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7. Full Text Top‐down structural analysis of posttranslationally modified proteins by Fourier transform ion cyclotron resonance‐MS with hydrogen/deuterium exchange and electron capture dissociation
by Pan, Jingxi and Borchers, Christoph H
Proteomics (Weinheim), ISSN 1615-9853, 03/2013, Volume 13, Issue 6, pp. 974 - 981
Protein isoforms | Hydrogen/deuterium exchange | Fourier transform ion cyclotron resonance mass spectrometry | Technology | Post‐translational modification | Protein structure characterization | Post-translational modification | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Protein Structure, Tertiary | Deuterium Exchange Measurement | Fourier Analysis | Oxidation-Reduction | Protein Structure, Secondary | Protein Isoforms - chemistry | Spectrometry, Mass, Electrospray Ionization - methods | Methionine | Models, Molecular | Protein Processing, Post-Translational | Calmodulin - chemistry | Binding Sites | Analysis | Calmodulin | Proteins | Fourier transforms | Index Medicus
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