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1. Full Text Guidelines for the use and interpretation of assays for monitoring autophagy
by Klionsky, Daniel J and Abdalla, Fabio C and Abeliovich, Hagai and Abraham, Robert T and Acevedo-Arozena, Abraham and Adeli, Khosrow and Agholme, Lotta and Agnello, Maria and Agostinis, Patrizia and Aguirre-Ghiso, Julio A and Ahn, Hyung Jun and Ait-Mohamed, Ouardia and Ait-Si-Ali, Slimane and Akematsu, Takahiko and Akira, Shizuo and Al-Younes, Hesham M and Al-Zeer, Munir A and Albert, Matthew L and Albin, Roger L and Alegre-Abarrategui, Javier and Aleo, Maria Francesca and Alirezaei, Mehrdad and Almasan, Alexandru and Almonte-Becerril, Maylin and Amano, Atsuo and Amaravadi, Ravi K and Amarnath, Shoba and Amer, Amal O and Andrieu-Abadie, Nathalie and Anantharam, Vellareddy and Ann, David K and Anoopkumar-Dukie, Shailendra and Aoki, Hiroshi and Apostolova, Nadezda and Arancia, Giuseppe and Aris, John P and Asanuma, Katsuhiko and Asare, Nana Y.O and Ashida, Hisashi and Askanas, Valerie and Askew, David S and Auberger, Patrick and Baba, Misuzu and Backues, Steven K and Baehrecke, Eric H and Bahr, Ben A and Bai, Xue-Yuan and Bailly, Yannick and Baiocchi, Robert and Baldini, Giulia and Balduini, Walter and Ballabio, Andrea and Bamber, Bruce A and Bampton, Edward T.W and Juhász, Gábor and Bartholomew, Clinton R and Bassham, Diane C and Bast, Robert C and Batoko, Henri and Bay, Boon-Huat and Beau, Isabelle and Béchet, Daniel M and Begley, Thomas J and Behl, Christian and Behrends, Christian and Bekri, Soumeya and Bellaire, Bryan and Bendall, Linda J and Benetti, Luca and Berliocchi, Laura and Bernardi, Henri and Bernassola, Francesca and Besteiro, Sébastien and Bhatia-Kissova, Ingrid and Bi, Xiaoning and Biard-Piechaczyk, Martine and Blum, Janice S and Boise, Lawrence H and Bonaldo, Paolo and Boone, David L and Bornhauser, Beat C and Bortoluci, Karina R and Bossis, Ioannis and Bost, Frédéric and Bourquin, Jean-Pierre and Boya, Patricia and Boyer-Guittaut, Michaël and Bozhkov, Peter V and Brady, Nathan R and Brancolini, Claudio and Brech, Andreas and Brenman, Jay E and Brennand, Ana and Bresnick, Emery H and Brest, Patrick and Bridges, Dave and Bristol, Molly L and Brookes, Paul S and Brown, Eric J and Brumell, John H and ... and Linköpings universitet and Institutionen för klinisk och experimentell medicin and Geriatrik and Institutionen för medicin och hälsa and Farmakologi and Experimentell patologi and Hälsouniversitetet and Cellbiologi
Autophagy, ISSN 1554-8627, 04/2012, Volume 8, Issue 4, pp. 445 - 544
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and... 
stress | vacuole | autolysosome | flux | LC3 | autophagosome | lysosome | phagophore | Proteins | Binding | Landes | Calcium | Biology | Bioscience | Cell | Cycle | Organogenesis | Cancer | Phagophore | Lysosome | Autolysosome | Flux | Autophagosome | Vacuole | Stress | ACTIVATED PROTEIN-KINASE | CHAPERONE-MEDIATED AUTOPHAGY | VACUOLE TARGETING PATHWAY | ENDOPLASMIC-RETICULUM STRESS | ISOLATED RAT HEPATOCYTES | STARVATION-INDUCED AUTOPHAGY | GLUCAGON-INDUCED AUTOPHAGY | CELL BIOLOGY | PROGRAMMED CELL-DEATH | BREAST-CANCER CELLS | BETAINE HOMOCYSTEINE METHYLTRANSFERASE | Biological Assay - methods | Animals | Autophagy - genetics | Models, Biological | Humans | Index Medicus | Life Sciences | Cellular Biology | Review | Medical and Health Sciences | Medicin och hälsovetenskap
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2. Intramammary infections and milk quality in low-input dairy goat farms
by Bossis, Ioannis
Veterinary Record, ISSN 0042-4900, 10/2018, Volume 183, Issue 14, pp. 446 - 447
RUMINANTS | SYSTEMS | VETERINARY SCIENCES | HERDS | YIELD | SUBCLINICAL MASTITIS | Mastitis | Animals | Milk - microbiology | Goats | Farms | Dairying | Female
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3. Full Text A novel arrangement of zinc finger nuclease system for in vivo targeted genome engineering: the tomato LEC1-LIKE4 gene case
by Hilioti, Zoe and Ganopoulos, Ioannis and Ajith, Sabna and Bossis, Ioannis and Tsaftaris, Athanasios
Plant Cell Reports, ISSN 0721-7714, 11/2016, Volume 35, Issue 11, pp. 2241 - 2255
A selection-free, highly efficient targeted mutagenesis approach based on a novel ZFN monomer arrangement for genome engineering in tomato reveals plant trait... 
Life Sciences | Biotechnology | Plant Biochemistry | Fruit | Development | Heterochronic | Transcription factor | Tomato | Plant Sciences | Zinc finger nuclease technology | Cell Biology | MUTAGENESIS | DNA CLEAVAGE | FOKI | PLANT-CELLS | BINDING TRANSCRIPTION FACTOR | FACTOR NF-Y | ARABIDOPSIS LEAFY COTYLEDON1 | PLANT SCIENCES | EMBRYO DEVELOPMENT | MUTANTS | THALIANA | Genetic Engineering - methods | Gene Targeting - methods | Genetic Testing | Genes, Plant | Lycopersicon esculentum - enzymology | Endonucleases - metabolism | Mutation - genetics | Fruit - anatomy & histology | Phenotype | Lycopersicon esculentum - growth & development | Base Sequence | Plants, Genetically Modified | Gene Expression Regulation, Plant | Lycopersicon esculentum - genetics | Zinc Fingers - genetics | Genes | Genomics | Plant genetics | Genetic research | Plants | DNA binding proteins | Zinc finger proteins | Tomatoes | Index Medicus
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4. Full Text LEC1-LIKE paralog transcription factor: how to survive extinction and fit in NF-Y protein complex
by Hilioti, Zoe and Ganopoulos, Ioannis and Bossis, Ioannis and Tsaftaris, Athanasios
Gene, ISSN 0378-1119, 06/2014, Volume 543, Issue 2, pp. 220 - 233
Transcription factor function is crucial for eukaryotic systems. The presence of transcription factor families in genomes represents a significant technical... 
Development | Cysteine variation | Gene evolution | NF-YB/L1L | Paralog transcription factor family | NF-Y | EFα1 | LEC1 | MEME | RT-PCR | RMSD | DNA-BINDING | HISTONE FOLD | CCAAT-BINDING | GENOME | ARABIDOPSIS LEAFY COTYLEDON1 | EMBRYO DEVELOPMENT | EVOLUTION | GXXXG MOTIF | DUPLICATE GENES | GENETICS & HEREDITY | SUBUNIT | Amino Acid Sequence | CCAAT-Binding Factor - chemistry | CCAAT-Binding Factor - classification | Molecular Sequence Annotation | CCAAT-Binding Factor - genetics | Molecular Sequence Data | Genome, Plant | Phylogeny | Genetic Variation | Plant Proteins - genetics | Plant Proteins - classification | Plant Proteins - chemistry | Lycopersicon esculentum - genetics | Evolution, Molecular | Family | Cysteine | Endangered species | Analysis | Genomics | Index Medicus
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5. Full Text A Protective and Broadly Cross-Neutralizing Epitope of Human Papillomavirus L2
by Ratish Gambhira and Balasubramanyam Karanam and Subhashini Jagu and Jeffrey N. Roberts and Christopher B. Buck and Ioannis Bossis and Hannah Alphs and Timothy Culp and Neil D. Christensen and Richard B. S. Roden
Journal of Virology, ISSN 0022-538X, 12/2007, Volume 81, Issue 24, pp. 13927 - 13931
Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
ANTIBODIES | IMMUNIZATION | RESPONSES | PEPTIDES | VIROLOGY | BOVINE PAPILLOMAVIRUS | CATTLE | VACCINATION | COTTONTAIL RABBIT PAPILLOMAVIRUS | INFECTION | MINOR CAPSID PROTEIN | Antibodies, Viral - biosynthesis | Amino Acid Sequence | Human papillomavirus 16 - pathogenicity | Antibodies, Monoclonal - biosynthesis | Humans | Molecular Sequence Data | Neutralization Tests | Human papillomavirus 16 - immunology | Cross Reactions | Papillomaviridae - immunology | Animals | Antibodies, Monoclonal - administration & dosage | Papillomavirus Infections - prevention & control | Papillomaviridae - classification | Capsid Proteins - immunology | Immunization, Passive | Antibodies, Viral - immunology | Mice | Oncogene Proteins, Viral - immunology | Antibodies, Viral - administration & dosage | Antibodies, Monoclonal - immunology | Index Medicus | Vaccines and Antiviral Agents
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6. Full Text The Hepatitis E Virus Open Reading Frame 3 Product Interacts with Microtubules and Interferes with Their Dynamics
by Harilakshmi Kannan and Sumin Fan and Deendayal Patel and Ioannis Bossis and Yan-Jin Zhang
Journal of Virology, ISSN 0022-538X, 07/2009, Volume 83, Issue 13, pp. 6375 - 6382
Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley... 
CYTOPLASMIC DYNEIN | CIS-REACTIVE ELEMENT | CAPSID PROTEIN | HERPES-SIMPLEX-VIRUS | COMPLEX | ORF3 PROTEIN | VIROLOGY | WILD BOAR | INFECTION | ADENOVIRUS | BINDING | Dyneins - metabolism | Hepatitis E virus - metabolism | Sequence Deletion | Humans | Open Reading Frames | Viral Proteins - genetics | Hepatitis E virus - genetics | Viral Proteins - metabolism | Microscopy, Confocal | Microtubules - metabolism | Tubulin - metabolism | Protein Binding | HeLa Cells | Index Medicus | Virus-Cell Interactions
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7. Full Text Viral FLICE inhibitory protein of rhesus monkey rhadinovirus inhibits apoptosis by enhancing autophagosome formation
by Ritthipichai, Krit and Nan, Yuchen and Bossis, Ioannis and Zhang, Yanjin
PLoS ONE, ISSN 1932-6203, 06/2012, Volume 7, Issue 6, pp. e39438 - e39438
Rhesus monkey rhadinovirus (RRV) is a gamma-2 herpesvirus closely related to human herpesvirus 8 (HHV8). RRV encodes viral FLICE inhibitory protein (vFLIP),... 
REGULATORY SUBUNIT | CELLS | DNA-SEQUENCES | MACAQUE RHADINOVIRUS | VIRUS | MORPHOLINO OLIGOMERS | SARCOMA-ASSOCIATED HERPESVIRUS | BIOLOGY | DEATH | SUPEROXIDE-DISMUTASE | EXPRESSION | CASP8 and FADD-Like Apoptosis Regulating Protein - pharmacology | Tumor Necrosis Factor-alpha - pharmacology | Animals | Apoptosis - drug effects | Humans | Rhadinovirus - metabolism | Macaca mulatta | HeLa Cells | Autophagy - drug effects | Cycloheximide - pharmacology | Phagosomes - drug effects | Tumor necrosis factor | Health aspects | Apoptosis | Oxidative stress | Veterinary colleges | Laboratories | Pathogenesis | Colorectal cancer | Viruses | Infections | Veterinary medicine | Caspase-3 | ADP | Autophagy | Proteins | Hepatitis | Ribose | NF-κB protein | Antigens | Enzymes | Cell survival | Cytokines | Latent infection | Caspase | Poly(ADP-ribose) polymerase | Breast cancer | siRNA | Tumor necrosis factor-α | Gene expression | Monkeys & apes | Survival | Virology | Polymerase | Cycloheximide | Signaling | Poly(ADP-ribose) Polymerase 1 | Lymphocytes B | Protein expression | Lymphomas | Viability | Phagocytosis | Index Medicus
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8. Full Text Autophagy: A target for retinoic acids
by Rajawat, Yogendra and Hilioti, Zoe and Bossis, Ioannis
Autophagy, ISSN 1554-8627, 11/2010, Volume 6, Issue 8, pp. 1224 - 1226
Autophagy is an intracellular catabolic process that responds with great sensitivity to nutrient availability, implying that certain macro- or micro-nutrients... 
Proteins | Binding | Landes | Calcium | Biology | Bioscience | Cell | Cycle | Organogenesis | Cancer | Amphisomes | Vitamin A | Autophagic efficiency | phospho-mTOR | Beclin 1 | Cation-independent mannose-6-phosphate receptor | Autophagosome maturation | Phospho-Akt1 | amphisomes | vitamin A | cation-independent mannose-6-phosphate receptor | autophagic efficiency | phospho-Akt1 | autophagosome maturation | CELL BIOLOGY | Humans | Phagosomes - metabolism | Receptors, Retinoic Acid - metabolism | Recombinant Fusion Proteins - metabolism | Sirolimus - pharmacology | Autophagy - drug effects | Receptor, IGF Type 2 - metabolism | trans-Golgi Network - drug effects | trans-Golgi Network - metabolism | Models, Biological | HeLa Cells | Phagosomes - drug effects | Tretinoin - pharmacology | Index Medicus
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9. Full Text Viral FLICE inhibitory protein of Rhesus monkey rhadinovirus inhibits apoptosis by enhancing autophagosome formation
by Ritthipichai, Krit and Nan, Yuchen and Bossis, Ioannis and Zhang, Yan-Jin
Infectious Agents and Cancer, ISSN 1750-9378, 2012, Volume 7, Issue Suppl 1, pp. P44 - P44
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10. Full Text Depletion of type IA regulatory subunit (RIα) of protein kinase A (PKA) in mammalian cells and tissues activates mTOR and causes autophagic deficiency
by Mavrakis, Manos and Lippincott-Schwartz, Jennifer and Stratakis, Constantine A and Bossis, Ioannis
Human Molecular Genetics, ISSN 0964-6906, 10/2006, Volume 15, Issue 19, pp. 2962 - 2971
The human PRKAR1A gene encodes the regulatory subunit 1-alpha (RI alpha) of the cAMP-dependent protein kinase A (PKA) holoenzyme. Regulation of the catalytic... 
YEAST | LATE ENDOSOMES | RAB7 | PATHWAY | BIOCHEMISTRY & MOLECULAR BIOLOGY | NODULAR ADRENOCORTICAL DISEASE | GENETICS & HEREDITY | CARNEY COMPLEX | MECHANISMS | MUTATIONS | CATALYTIC SUBUNITS | MOLECULAR ANALYSIS | Protein Kinases - metabolism | Cell Line | RNA, Small Interfering - genetics | Phosphorylation | Humans | Phagosomes - metabolism | Cells, Cultured | DNA, Complementary - genetics | Autophagy - physiology | Adrenal Cortex Diseases - metabolism | Mice, Knockout | Proteins - genetics | Animals | Cyclic AMP-Dependent Protein Kinases - genetics | Proteins - metabolism | Base Sequence | Cyclic AMP-Dependent Protein Kinase RIalpha Subunit | Adrenal Cortex Diseases - genetics | Mice | TOR Serine-Threonine Kinases | HeLa Cells | Mutation | Cyclic AMP-Dependent Protein Kinases - deficiency | Fibroblasts - metabolism | Index Medicus
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11. Full Text A diagnostic device for in-situ detection of swine viral diseases: The SWINOSTICS project
by Montagnese, Concetta and Montagnese, Concetta and Barattini, Paolo and Giusti, Alessandro and Balka, Gyula and Balka, Gyula and Bruno, Ugo and Bruno, Ugo and Bossis, Ioannis and Gelasakis, Athanasios and Gelasakis, Athanasios and Bonasso, Matteo and Philmis, Panayiotis and Philmis, Panayiotis and Dénes, Lilla and Dénes, Lilla and Peransi, Sergio and Peransi, Sergio and Rodrigo, Manuel and Rodrigo, Manuel and Simón, Santiago and Simón, Santiago and Griol, Amadeu and Wozniakowski, Grzegorz and Wozniakowski, Grzegorz and Podgorska, Katarzyna and Pugliese, Carolina and Pugliese, Carolina and Nannucci, Lapo and Nannucci, Lapo and D'Auria, Sabato and D’auria, Sabato and Varriale, Antonio
Sensors (Basel, Switzerland), ISSN 1424-8220, 01/2019, Volume 19, Issue 2, p. 407
In this paper, we present the concept of a novel diagnostic device for on-site analyses, based on the use of advanced bio-sensing and photonics technologies to... 
Swine disease | Photonic integrated circuit (PIC) | Ring resonator | Antibody | Photonics | ELECTROCHEMISTRY | CHEMISTRY, ANALYTICAL | antibody | VIRUS | swine disease | ring resonator | PORCINE PARVOVIRUS | INSTRUMENTS & INSTRUMENTATION | photonic integrated circuit (PIC) | SURFACE | INFECTION | photonics | PCR | FEVER | Index Medicus
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12. Full Text Generation of a tumor vaccine candidate based on conjugation of a MUC1 peptide to polyionic papillomavirus virus-like particles
by Pejawar-Gaddy, Sharmila and Rajawat, Yogendra and Hilioti, Zoe and Xue, Jia and Gaddy, Daniel F and Finn, Olivera J and Viscidi, Raphael P and Bossis, Ioannis
Cancer Immunology, Immunotherapy, ISSN 0340-7004, 11/2010, Volume 59, Issue 11, pp. 1685 - 1696
Virus-like particles (VLPs) are promising vaccine technology due to their safety and ability to elicit strong immune responses. Chimeric VLPs can extend this... 
Papillomaviruses | MUC1 | Immunology | Medicine & Public Health | Immunotherapy | Oncology | Cancer Research | Chimeric VLPs | Chimeric VLPs Immunotherapy | WILD-TYPE | HUMAN DENDRITIC CELLS | PROTEIN | IMMUNOLOGY | CANCER | RESPONSES | IMMUNOGENICITY | EPITOPE | ONCOLOGY |