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1. Full Text Laurent Briollais, Robert G. Bristow, Paul C. Boutros, PRACTICAL consortium, Alexandre R. Zlotta Response
by Briollais, L and Bristow, RG and Boutros, PC and Zlotta, AR and PRACTICAL Consortium
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, ISSN 0027-8874, 12/2017, Volume 109, Issue 12
PROSTATE | ONCOLOGY
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2. Full Text The Promise and Perils of Sequencing Individual Prostate Cancer Nuclei
by Boutros, Paul C
European Urology, ISSN 0302-2838, 11/2018, Volume 74, Issue 5, pp. 560 - 561
UROLOGY & NEPHROLOGY | Prostatic Neoplasms | Male | Genomics | Humans | Index Medicus
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3. Full Text VennDiagram: A package for the generation of highly-customizable Venn and Euler diagrams in R
by Chen, Hanbo and Boutros, Paul C
BMC Bioinformatics, ISSN 1471-2105, 01/2011, Volume 12, Issue 1, pp. 35 - 35
Background: Visualization of orthogonal (disjoint) or overlapping datasets is a common task in bioinformatics. Few tools exist to automate the generation of... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Computer Graphics | Computational Biology - methods | Data Interpretation, Statistical | Software | Study and teaching | Usage | Algorithms | Analysis | Venn diagrams | Computational biology | Medical research | Linux | Bioinformatics | Index Medicus
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4. Full Text Response
by Briollais, Laurent and Bristow, Robert G and Boutros, Paul C and Zlotta, Alexandre R and PRACTICAL consortium
JNCI: Journal of the National Cancer Institute, ISSN 0027-8874, 12/2017, Volume 109, Issue 12
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5. Full Text Abstract 102: Pan-cancer analysis of sex differences in somatic mutation profiles
by Li, Constance H and Haider, Syed and Boutros, Paul C
Cancer Research, ISSN 0008-5472, 07/2016, Volume 76, Issue 14 Supplement, pp. 102 - 102
Sex influences the clinical and pathological characteristics of a number of cancers including those of the lung, colon and kidney. Men and women differ in... 
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6. Full Text Comparing continuous and discrete analyses of breast cancer survival information
by Bhandari, Vinayak and Boutros, Paul C
Genomics, ISSN 0888-7543, 08/2016, Volume 108, Issue 2, pp. 78 - 83
Treatment of cancer is becoming increasingly personalized and biomarkers continue to be developed to refine treatment decisions. Tumour mRNA abundance data is... 
Survival analysis | Machine learning | Biomarkers | Cox proportional hazards | Discrete data | Random forest | Continuous data | PREDICTOR | SIGNATURES | CELL LUNG-CANCER | GENE | MODELS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | EXPRESSION | Prognosis | Humans | Gene Expression Regulation, Neoplastic | Proportional Hazards Models | RNA, Messenger - analysis | Gene Expression Profiling - methods | Models, Statistical | RNA, Neoplasm - analysis | Algorithms | Breast Neoplasms - genetics | Survival Analysis | Breast Neoplasms - mortality | Female | Biomarkers, Tumor - genetics | RNA | Analysis | Breast cancer | Index Medicus
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7. Full Text Solid tumors reveal their secrets: predictive and prognostic evidence from copy number analysis
by Boutros, P. C and Pandita, A
Science, ISSN 0036-8075, 06/2014, Volume 344, Issue 6188, pp. 1187 - 1187
Recent research has revealed the importance of copy number analysis in the study of solid tumors. New evidence argues that tumors can be classified in those... 
Mutations | Breast | Risk | Aberration | Sequencing | Constraining | Tumors | Cancer
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8. Full Text The Molecular Taxonomy of Primary Prostate Cancer
by Abeshouse, Adam and Ahn, Jaeil and Akbani, Rehan and Ally, Adrian and Amin, Samirkumar and Andry, Christopher D and Annala, Matti and Aprikian, Armen and Armenia, Joshua and Arora, Arshi and Auman, J. Todd and Balasundaram, Miruna and Balu, Saianand and Barbieri, Christopher E and Bauer, Thomas and Benz, Christopher C and Bergeron, Alain and Beroukhim, Rameen and Berrios, Mario and Bivol, Adrian and Bodenheimer, Tom and Boice, Lori and Bootwalla, Moiz S and Borges dos Reis, Rodolfo and Boutros, Paul C and Bowen, Jay and Bowlby, Reanne and Boyd, Jeffrey and Bradley, Robert K and Breggia, Anne and Brimo, Fadi and Bristow, Christopher A and Brooks, Denise and Broom, Bradley M and Bryce, Alan H and Bubley, Glenn and Burks, Eric and Butterfield, Yaron S.N and Button, Michael and Canes, David and Carlotti, Carlos G and Carlsen, Rebecca and Carmel, Michel and Carroll, Peter R and Carter, Scott L and Cartun, Richard and Carver, Brett S and Chan, June M and Chang, Matthew T and Chen, Yu and Cherniack, Andrew D and Chevalier, Simone and Chin, Lynda and Cho, Juok and Chu, Andy and Chuah, Eric and Chudamani, Sudha and Cibulskis, Kristian and Ciriello, Giovanni and Clarke, Amanda and Cooperberg, Matthew R and Corcoran, Niall M and Costello, Anthony J and Cowan, Janet and Crain, Daniel and Curley, Erin and David, Kerstin and Demchok, John A and Demichelis, Francesca and Dhalla, Noreen and Dhir, Rajiv and Doueik, Alexandre and Drake, Bettina and Dvinge, Heidi and Dyakova, Natalya and Felau, Ina and Ferguson, Martin L and Frazer, Scott and Freedland, Stephen and Fu, Yao and Gabriel, Stacey B and Gao, Jianjiong and Gardner, Johanna and Gastier-Foster, Julie M and Gehlenborg, Nils and Gerken, Mark and Gerstein, Mark B and Getz, Gad and Godwin, Andrew K and Gopalan, Anuradha and Graefen, Markus and Graim, Kiley and Gribbin, Thomas and Guin, Ranabir and Gupta, Manaswi and Hadjipanayis, Angela and Haider, Syed and Hamel, Lucie and Hayes, D. Neil and Heiman, David I and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell, ISSN 0092-8674, 11/2015, Volume 163, Issue 4, pp. 1011 - 1025
There is substantial heterogeneity among primary prostate cancers, evident in the spectrum of molecular abnormalities and its variable clinical course. As part... 
ACTIVE ANDROGEN RECEPTOR | WHOLE-GENOME | DNA METHYLATION | BIOCHEMISTRY & MOLECULAR BIOLOGY | SPOP | GENOMIC ABERRATIONS | RADICAL PROSTATECTOMY | RECURRENCE | EXPRESSION PROFILES | MUTATIONS | ETS GENE FUSIONS | CELL BIOLOGY | Prostatic Neoplasms - metabolism | Prostatic Neoplasms - pathology | Signal Transduction | Epigenesis, Genetic | Humans | Receptors, Androgen - metabolism | Gene Expression Regulation, Neoplastic | ras Proteins - metabolism | Gene Fusion | Male | Phosphatidylinositol 3-Kinases - metabolism | Neoplasm Metastasis - genetics | Prostatic Neoplasms - genetics | DNA Repair | Mutation | Epigenetic inheritance | Prostate cancer | Analysis | Genomics | Index Medicus
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9. Full Text Comprehensive genomic characterization of head and neck squamous cell carcinomas
by Lawrence, Michael S and Sougnez, Carrie and Lichtenstein, Lee and Cibulskis, Kristian and Lander, Eric and Gabriel, Stacey B and Getz, Gad and Ally, Adrian and Balasundaram, Miruna and Birol, Inanc and Bowlby, Reanne and Brooks, Denise and Butterfield, Yaron S. N and Carlsen, Rebecca and Cheng, Dean and Chu, Andy and Dhalla, Noreen and Guin, Ranabir and Holt, Robert A and Jones, Steven J.M and Lee, Darlene and Li, Haiyan I and Marra, Marco A and Mayo, Michael and Moore, Richard A and Mungall, Andrew J and Robertson, A. Gordon and Schein, Jacqueline E and Sipahimalani, Payal and Tam, Angela and Thiessen, Nina and Wong, Tina and Protopopov, Alexei and Santoso, Netty and Lee, Semin and Parfenov, Michael and Zhang, Jianhua and Mahadeshwar, Harshad S and Tang, Jiabin and Ren, Xiaojia and Seth, Sahil and Haseley, Psalm and Zeng, Dong and Yang, Lixing and Xu, Andrew W and Song, Xingzhi and Pantazi, Angeliki and Bristow, Christopher A and Hadjipanayis, Angela and Seidman, Jonathan and Chin, Lynda and Park, Peter J and Kucherlapati, Raju and Akbani, Rehan and Casasent, Tod and Liu, Wenbin and Lu, Yiling and Mills, Gordon and Motter, Thomas and Weinstein, John and Diao, Lixia and Wang, Jing and Hong Fan, You and Liu, Jinze and Wang, Kai and Auman, J. Todd and Balu, Saianand and Bodenheimer, Thomas and Buda, Elizabeth and Hayes, D. Neil and Hoadley, Katherine A and Hoyle, Alan P and Jefferys, Stuart R and Jones, Corbin D and Kimes, Patrick K and Liu, Yufeng and Marron, J.S and Meng, Shaowu and Mieczkowski, Piotr A and Mose, Lisle E and Parker, Joel S and Perou, Charles M and Prins, Jan F and Roach, Jeffrey and Shi, Yan and Simons, Janae V and Singh, Darshan and Soloway, Matthew G and Tan, Donghui and Veluvolu, Umadevi and Walter, Vonn and Waring, Scot and Wilkerson, Matthew D and Wu, Junyuan and Zhao, Ni and Cherniack, Andrew D and Hammerman, Peter S and Tward, Aaron D and Pedamallu, Chandra Sekhar and Saksena, Gordon and ... and Canc Genome Atlas Network and Cancer Genome Atlas Network and The Cancer Genome Atlas Network
Nature, ISSN 0028-0836, 01/2015, Volume 517, Issue 7536, pp. 576 - 582
The Cancer Genome Atlas profiled 279 head and neck squamous cell carcinomas (HNSCCs) to provide a comprehensive landscape of somatic genomic alterations. Here... 
CANCER GROWTH | ACTIVATION | GROWTH-FACTOR-RECEPTOR | MULTIDISCIPLINARY SCIENCES | RESISTANCE | CLASSIFICATION | INHIBITORS | MUTATIONS | NF-KAPPA-B | LIM PROTEIN AJUBA | EGFR | Oncogenes - genetics | Carcinoma, Squamous Cell - genetics | Genomics | Humans | Male | DNA Copy Number Variations - genetics | Signal Transduction - genetics | Molecular Targeted Therapy | Mutation - genetics | Genome, Human - genetics | Transcription Factors - metabolism | Squamous Cell Carcinoma of Head and Neck | RNA, Neoplasm - genetics | Female | Head and Neck Neoplasms - genetics | DNA, Neoplasm - genetics | Gene Expression Regulation, Neoplastic - genetics | Squamous cell carcinoma | Oncology, Experimental | Genetic research | Head and neck cancer | Genetic aspects | Research | Gene expression | Cancer | Transcription factors | Cell cycle | DNA methylation | Genomes | Mutation | Head & neck cancer | Kinases | Cancer therapies | Tumors | Apoptosis | Index Medicus
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10. Full Text International network of cancer genome projects
by Hudson, Thomas J and Anderson, Warwick and Aretz, Axel and Barker, Anna D and Bell, Cindy and Bernabé, Rosa R and Bhan, M. K and Calvo, Fabien and Eerola, Iiro and Gerhard, Daniela S and Guttmacher, Alan and Guyer, Mark and Hemsley, Fiona M and Jennings, Jennifer L and Kerr, David and Klatt, Peter and Kolar, Patrik and Kusuda, Jun and Lane, David P and Laplace, Frank and Lu, Youyong and Nettekoven, Gerd and Ozenberger, Brad and Peterson, Jane and Rao, T. S and Remacle, Jacques and Schafer, Alan J and Shibata, Tatsuhiro and Stratton, Michael R and Vockley, Joseph G and Watanabe, Koichi and Yang, Huanming and Yuen, Matthew M. F and Knoppers, Bartha M and Bobrow, Martin and Cambon-Thomsen, Anne and ssler, Lynn G and Dyke, Stephanie O. M and Joly, Yann and Kato, Kazuto and Kennedy, Karen L and Nicolás, Pilar and Parker, Michael J and Rial-Sebbag, Emmanuelle and Romeo-Casabona, Carlos M and Shaw, Kenna M and Wallace, Susan and Wiesner, Georgia L and Zeps, Nikolajs and Lichter, Peter and Biankin, Anew V and Chabannon, Christian and Chin, Lynda and Clément, Bruno and de Alava, Enrique and Degos, Françoise and Ferguson, Martin L and Geary, Peter and Hayes, D. Neil and Johns, Amber L and Kasprzyk, Arek and Nakagawa, Hidewaki and Penny, Robert and Piris, Miguel A and Sarin, Rajiv and Scarpa, Aldo and van de Vijver, Marc and Futreal, P. Anew and Aburatani, Hiroyuki and Bayés, Mónica and Bowtell, David D. L and Campbell, Peter J and Estivill, Xavier and Grimmond, Sean M and Gut, Ivo and Hirst, Martin and López-Otín, Carlos and Majumder, Partha and Marra, Marco and McPherson, John D and Ning, Zemin and Puente, Xose S and Ruan, Yijun and Stunnenberg, Henik G and Swerdlow, Harold and Velculescu, Victor E and Wilson, Richard K and Xue, Hong H and Yang, Liu and Spellman, Paul T and Bader, Gary D and Boutros, Paul C and Flicek, Paul and Getz, Gad and Guigó, Roderic and Guo, Guangwu and Haussler, David and Heath, Simon and Hubbard, Tim J and Jiang, Tao and ... and Int Canc Genome Consortium and International Cancer Genome Consortium and The International Cancer Genome Consortium and Science for Life Laboratory, SciLifeLab and Centra and Proteomik (stängd 20130101) and Skolan för bioteknologi (BIO) and KTH
Nature, ISSN 0028-0836, 2010, Volume 464, Issue 7291, pp. 993 - 998
The International Cancer Genome Consortium (ICGC) was launched to coordinate large-scale cancer genome studies in tumours from 50 different cancer types and/or... 
MYELOID-LEUKEMIA GENOME | BREAST-CANCER | PATHWAYS | GENE | DATABASE | MULTIDISCIPLINARY SCIENCES | LANDSCAPES | SOMATIC MUTATIONS | Humans | Databases, Genetic | Genetics, Medical - trends | Intellectual Property | Neoplasms - classification | International Cooperation | Genome, Human - genetics | DNA Methylation | Neoplasms - therapy | Neoplasms - genetics | Genomics - organization & administration | DNA Mutational Analysis - trends | Genetics, Medical - organization & administration | Mutation | Neoplasms - pathology | Genes, Neoplasm - genetics | Genomics - trends | Genetic aspects | Information management | Organization formation | Medical societies | Cancer | Studies | Medical research | Genomics | Technological change | Clinical trials | Biomarkers | Clinical medicine | Gene expression | Tumors | Index Medicus | Mutations | Networks | Therapy | Tumours | Genomes | Globes | Management | Càncer | Oncogènesi | Carcinogenesis | Basic Medicine | Medical and Health Sciences | Medicin och hälsovetenskap | MEDICINE | Klinisk genetik | Dermatology and venerology,clinical genetics, internal medicine | Medical Genetics | Medicinsk genetik | Clinical genetics | MEDICIN | Medicinska och farmaceutiska grundvetenskaper | Dermatologi och venerologi, klinisk genetik, invärtesmedicin
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11. Full Text Erratum: Onco-proteogenomics: Cancer proteomics joins forces with genomics (Nature Methods (2014) 11 (1107-1113))
by Alfaro, Javier A and Sinha, Ankit and Kislinger, Thomas and Boutros, Paul C
Nature Methods, ISSN 1548-7091, 01/2015, Volume 12, Issue 2, p. 160
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