Articles

UofT Libraries is getting a new library services platform in January 2021.
Learn more about the change.

Search Articles

Advanced search
Help

Catalogue

Articles

Databases

X
Search Filters
Format Format
Subjects Subjects
Subjects Subjects
X
Sort by Item Count (A-Z)
Filter by Count
science & technology (29) 29
humans (26) 26
life sciences & biomedicine (19) 19
cancer (11) 11
oncology (11) 11
dna methylation (10) 10
research (10) 10
tumors (10) 10
bioinformatics (9) 9
female (9) 9
multidisciplinary sciences (9) 9
science & technology - other topics (9) 9
bayes theorem (8) 8
gene expression (8) 8
genomes (8) 8
male (8) 8
mutation (8) 8
algorithms (7) 7
biochemistry & molecular biology (7) 7
gene expression profiling (7) 7
gene expression regulation, neoplastic (7) 7
biological and medical sciences (6) 6
cluster analysis (6) 6
genetic aspects (6) 6
genomics (6) 6
proteomics (6) 6
signal transduction (6) 6
biochemical research methods (5) 5
computational biology - methods (5) 5
genes (5) 5
medical sciences (5) 5
animals (4) 4
biology (4) 4
biotechnology & applied microbiology (4) 4
breast cancer (4) 4
breast neoplasms - genetics (4) 4
colorectal cancer (4) 4
deoxyribonucleic acid--dna (4) 4
genome, human (4) 4
mathematical & computational biology (4) 4
mathematics (4) 4
mice (4) 4
micrornas - genetics (4) 4
mutation - genetics (4) 4
neoplasms - genetics (4) 4
physical sciences (4) 4
rna, messenger - genetics (4) 4
signal transduction - genetics (4) 4
statistics & probability (4) 4
analysis (3) 3
bayesian networks (3) 3
brain neoplasms - genetics (3) 3
cell biology (3) 3
cell line, tumor (3) 3
computer science (3) 3
computer science, interdisciplinary applications (3) 3
dna mutational analysis (3) 3
exome - genetics (3) 3
gene dosage (3) 3
genetics (3) 3
genome, human - genetics (3) 3
middle aged (3) 3
molecular biology (3) 3
neoplasm proteins - genetics (3) 3
neoplasm proteins - metabolism (3) 3
neoplasm staging (3) 3
neoplasms (3) 3
oligonucleotide array sequence analysis - methods (3) 3
receptor, erbb-2 - metabolism (3) 3
rna, messenger - metabolism (3) 3
software (3) 3
technology (3) 3
transcriptome (3) 3
adenocarcinoma (2) 2
adenocarcinoma - genetics (2) 2
adenocarcinoma of lung (2) 2
aged (2) 2
bayesian analysis (2) 2
bladder cancer (2) 2
breast neoplasms - metabolism (2) 2
breast neoplasms - pathology (2) 2
chromatin (2) 2
chromosome aberrations (2) 2
classification (2) 2
clustering (2) 2
colorectal neoplasms - genetics (2) 2
computer programs (2) 2
computer simulation (2) 2
computing science, applications and software (2) 2
cpg islands (2) 2
crosstalk (2) 2
disease models, animal (2) 2
dna copy number variations (2) 2
dna copy number variations - genetics (2) 2
dna sequencing (2) 2
drug resistance, neoplasm (2) 2
flow cytometry (2) 2
gene expression profiling - methods (2) 2
gene expression regulation, neoplastic - drug effects (2) 2
gene mutations (2) 2
more...
Language Language
Publication Date Publication Date
Click on a bar to filter by decade
Slide to change publication date range


1. Full Text TCPA: A resource for cancer functional proteomics data
by Li, Jun and Lu, Yiling and Akbani, Rehan and Ju, Zhenlin and Roebuck, Paul L and Liu, Wenbin and Yang, Ji-Yeon and Broom, Bradley M and Verhaak, Roeland G.W and Kane, David W and Wakefield, Chris and Weinstein, John N and Mills, Gordon B and Liang, Han
Nature methods, ISSN 1548-7091, 11/2013, Volume 10, Issue 11, pp. 1046 - 1047
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Neoplasms - metabolism | Neoplasms - genetics | Atlases as Topic | Humans | Proteomics | Neoplasm Proteins - genetics | Neoplasm Proteins - metabolism | Index Medicus
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
2. Full Text A pan-cancer proteomic perspective on the cancer genome atlas
by Akbani, Rehan and Ng, Patrick Kwok Shing and Werner, Henrica M. J and Shahmoradgoli, Maria and Zhang, Fan and Ju, Zhenlin and Liu, Wenbin and Yang, Ji-Yeon and Yoshihara, Kosuke and Li, Jun and Ling, Shiyun and Seviour, Elena G and Ram, Prahlad T and Minna, John D and Diao, Lixia and Tong, Pan and Heymach, John V and Hill, Steven M and Dondelinger, Frank and Städler, Nicolas and Byers, Lauren A and Meric-Bernstam, Funda and Weinstein, John N and Broom, Bradley M and Verhaak, Roeland G.W and Liang, Han and Mukherjee, Sach and Lu, Yiling and Mills, Gordon B
Nature communications, ISSN 2041-1723, 05/2014, Volume 5, Issue 1, pp. 3887 - 3887
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Index Medicus
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
3. Full Text Targeting the MYCN–PARP–DNA damage response pathway in neuroendocrine prostate cancer
by Zhang, Wei and Liu, Bo and Wu, Wenhui and Li, Likun and Broom, Bradley M and Basourakos, Spyridon P and Korentzelos, Dimitrios and Luan, Yang and Wang, Jianxiang and Yang, Guang and Park, Sanghee and Azad, Abul Kalam and Cao, Xuhong and Kim, Jeri and Corn, Paul G and Logothetis, Christopher J and Aparicio, Ana M and Chinnaiyan, Arul M and Navone, Nora and Troncoso, Patricia and Thompson, Timothy C
Clinical cancer research, ISSN 1078-0432, 02/2018, Volume 24, Issue 3, pp. 696 - 707
Life Sciences & Biomedicine | Oncology | Science & Technology | Prostatic Neoplasms - metabolism | Humans | Gene Expression Regulation, Neoplastic | Transcriptome | N-Myc Proto-Oncogene Protein - genetics | Male | Gene Expression Profiling | Mitosis - genetics | Aurora Kinase A - metabolism | Heterografts | Prostatic Neoplasms - genetics | Prostatic Neoplasms - drug therapy | Disease Models, Animal | Carcinoma, Neuroendocrine - metabolism | Prostatic Neoplasms - pathology | Computational Biology - methods | Signal Transduction | Carcinoma, Neuroendocrine - drug therapy | Carcinoma, Neuroendocrine - genetics | Poly(ADP-ribose) Polymerase Inhibitors - pharmacology | Poly(ADP-ribose) Polymerases - metabolism | Animals | Poly(ADP-ribose) Polymerases - genetics | Carcinoma, Neuroendocrine - pathology | N-Myc Proto-Oncogene Protein - metabolism | Cell Line, Tumor | Mice | DNA Damage | Adenocarcinoma | Transcription | Genes | DNA damage | Myc protein | Signal transduction | Pathways | Castration | Bioinformatics | Deoxyribonucleic acid--DNA | Phenotypes | Nucleotide sequence | BRCA1 protein | Poly(ADP-ribose) polymerase | Breast cancer | Gene expression | Ribonucleic acid--RNA | Signaling | Poly(ADP-ribose) Polymerase 1 | Inhibitors | Damage detection | Experimental design | Prostate cancer | Prostate | Cell migration | Cancer | N-MYC | Neuroendocrine prostate cancer | PARP | AURKA inhibitor | PARP inhibitor
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
4. Full Text A galaxy implementation of next-generation clustered heatmaps for interactive exploration of molecular profiling data
by Broom, Bradley M and Ryan, Michael C and Brown, Robert E and Ikeda, Futa and Stucky, Mark and Kane, David W and Melott, James and Wakefield, Chris and Casasent, Tod D and Akbani, Rehan and Weinstein, John N
Cancer research (Chicago, Ill.), ISSN 0008-5472, 11/2017, Volume 77, Issue 21, pp. e23 - e26
Life Sciences & Biomedicine | Oncology | Science & Technology | Algorithms | Neoplasms - genetics | Humans | Computational Biology - trends | High-Throughput Nucleotide Sequencing | Software | Transcriptome - genetics | Internet | Genome, Human | RNA - genetics | Profiling | Galaxies | Zooming | Exploration | Genomes | Biology | Ribonucleic acid--RNA | Information sources | Computer programs | Computer applications | Bioinformatics | Cancer | Index Medicus
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
5. Full Text NSD1 inactivation and SETD2 mutation drive a convergence toward loss of function of H3K36 writers in clear cell renal cell carcinomas
by Su, Xiaoping and Zhang, Jianping and Mouawad, Roger and Compérat, Eva and Rouprêt, Morgan and Allanic, Frederick and Parra, Jérôme and Bitker, Marc-Olivier and Thompson, Erika J and Gowrishankar, Banumathy and Houldsworth, Jane and Weinstein, John N and Tost, Jorg and Broom, Bradley M and Khayat, David and Spano, Jean-Philippe and Tannir, Nizar M and Malouf, Gabriel G
Cancer research (Chicago, Ill.), ISSN 0008-5472, 09/2017, Volume 77, Issue 18, pp. 4835 - 4845
Life Sciences & Biomedicine | Oncology | Science & Technology | Kidney Neoplasms - genetics | Cell Proliferation | Prognosis | Follow-Up Studies | Kidney - pathology | Epigenesis, Genetic | Humans | Middle Aged | Gene Expression Regulation, Neoplastic | Carcinoma, Renal Cell - genetics | Male | Kidney Neoplasms - metabolism | Biomarkers, Tumor | DNA Methylation | Kidney - metabolism | Neoplasm Grading | Female | Tumor Cells, Cultured | Nuclear Proteins - genetics | Intracellular Signaling Peptides and Proteins - genetics | Promoter Regions, Genetic | Histone-Lysine N-Methyltransferase - genetics | Carcinoma, Renal Cell - pathology | Survival Rate | Carcinoma, Renal Cell - metabolism | Histone Methyltransferases | Histones - genetics | Histone-Lysine N-Methyltransferase - metabolism | Kidney Neoplasms - pathology | Aged | Histones - metabolism | Mutation | Neoplasm Staging | Apoptosis | Chromatin | Deactivation | Genes | Methyltransferase | Genomes | Inactivation | Convergence | Gene silencing | Angiogenesis | DNA methylation | Epigenetics | Aberration | Methylation | Vascular endothelial growth factor | Histone H3 | Clear cell-type renal cell carcinoma | Deoxyribonucleic acid--DNA | Tumors | Cancer | CpG islands | Index Medicus
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
6. Full Text Interactive Clustered Heat Map Builder: An easy web-based tool for creating sophisticated clustered heat maps [version 2; peer review: 2 approved]
by Ryan, Michael C and Stucky, Mark and Wakefield, Chris and Melott, James M and Akbani, Rehan and Weinstein, John N and Broom, Bradley M
F1000 research, ISSN 2046-1402, 2019, Volume 8, p. 1750
Heat | Maps | Cloning | Software | Genomes | Gene expression | Clustering | Gene mapping | Bioinformatics | Index Medicus
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
7. Full Text Modeling of patient-derived xenografts in colorectal cancer
by Katsiampoura, Anastasia and Raghav, Kanwal and Jiang, Zhi-Qin and Menter, David G and Varkaris, Andreas and Morelli, Maria P and Manuel, Shanequa and Wu, Ji and Sorokin, Alexey V and Rizi, Bahar Salimian and Bristow, Christopher and Tian, Feng and Airhart, Susan and Cheng, Mingshan and Broom, Bradley M and Morris, Jeffrey and Overman, Michael J and Powis, Garth and Kopetz, Scott
Molecular cancer therapeutics, ISSN 1535-7163, 07/2017, Volume 16, Issue 7, pp. 1435 - 1442
Life Sciences & Biomedicine | Oncology | Science & Technology | Animals | Colorectal Neoplasms - drug therapy | Colorectal Neoplasms - genetics | Humans | Female | Male | Mice | Colorectal Neoplasms - pathology | Neoplasm Staging | Xenograft Model Antitumor Assays - methods | Disease Models, Animal | Animal models | Divergence | Xenotransplantation | Colorectal carcinoma | Immunodeficiency | Colorectal cancer | Implantation | Tissue analysis | Confidence intervals | Heterogeneity | Biopsy | Surgery | Xenografts | Biomarkers | Modelling | Drug discovery | Bioinformatics | Tumors | Cancer | Index Medicus | genetic diversity | chemoresistance | drug discovery | patient derived xenograft | tumor heterogeneity
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
8. Full Text Model averaging strategies for structure learning in Bayesian networks with limited data
by Broom, Bradley M and Do, Kim-Anh and Subramanian, Devika
BMC bioinformatics, ISSN 1471-2105, 2012, Volume 13, Issue Suppl 13, pp. S10 - S10
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | Algorithms | Gene Expression Profiling - statistics & numerical data | Glioblastoma - genetics | Artificial Intelligence | Humans | Bayes Theorem | Female | Male | Models, Statistical | Cluster Analysis | Studies | Medical research | Bayesian analysis | Cancer | glioblastoma multiforme | Statistical analysis | Data processing | Genomes | Gene expression | Survival | Computer programs | Learning | Interferon | Mathematical models | Bioinformatics | Age | Atlases | Index Medicus
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
9. Full Text Gene expression meta-analysis supports existence of molecular apocrine breast cancer with a role for androgen receptor and implies interactions with ErbB family
by Sanga, Sandeep and Broom, Bradley M and Cristini, Vittorio and Edgerton, Mary E
BMC medical genomics, ISSN 1755-8794, 2009, Volume 2, Issue 1, pp. 59 - 59
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Hormone receptors | Breast cancer | Genetic aspects | Cellular signal transduction | Research | Gene expression | Studies | Genotype & phenotype | Epidermal growth factor | Principal components analysis | Biology | Data mining | Bioinformatics | Methods | Tumors
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
10. Full Text FuncPEP: A Database of Functional Peptides Encoded by Non-Coding RNAs
by Mihnea P. Dragomir and Ganiraju C. Manyam and Leonie Florence Ott and Léa Berland and Erik Knutsen and Cristina Ivan and Leonard Lipovich and Bradley M. Broom and George A. Calin
Non-coding RNA, 09/2020, Volume 6, Issue 4, p. 41
small peptides | small open reading frames | ncRNA-encoded peptides | long non-coding RNAs | ncRNA translation | non-coding RNAs
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
11. Full Text Corrigendum: A pan-cancer proteomic perspective on the Cancer Genome Atlas
by Akbani, Rehan and Ng, Patrick Kwok Shing and Werner, Henrica M.J and Shahmoradgoli, Maria and Zhang, Fan and Ju, Zhenlin and Liu, Wenbin and Yang, Ji-Yeon and Yoshihara, Kosuke and Li, Jun and Ling, Shiyun and Seviour, Elena G and Ram, Prahlad T and Minna, John D and Diao, Lixia and Tong, Pan and Heymach, John V and Hill, Steven M and Dondelinger, Frank and Städler, Nicolas and Byers, Lauren A and Meric-Bernstam, Funda and Weinstein, John N and Broom, Bradley M and Verhaak, Roeland G.W and Liang, Han and Mukherjee, Sach and Lu, Yiling and Mills, Gordon B
Nature communications, 01/2015, Volume 6, pp. 4852 - 4852
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
12. Full Text Selective genomic copy number imbalances and probability of recurrence in early-stage breast cancer
by Thompson, Patricia A and Brewster, Abenaa M and Kim-Anh, Do and Baladandayuthapani, Veerabhadran and Broom, Bradley M and Edgerton, Mary E and Hahn, Karin M and Murray, James L and Sahin, Aysegul and Tsavachidis, Spyros and Wang, Yuker and Zhang, Li and Hortobagyi, Gabriel N and Mills, Gordon B and Bondy, Melissa L
PloS one, ISSN 1932-6203, 2011, Volume 6, Issue 8, pp. e23543 - e23543
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Receptors, Estrogen - metabolism | Prognosis | Humans | Kaplan-Meier Estimate | Neoplasm Recurrence, Local | Proportional Hazards Models | Receptor, ErbB-2 - metabolism | Ki-67 Antigen - metabolism | Breast Neoplasms - metabolism | DNA Copy Number Variations | Receptors, Progesterone - metabolism | Genomic Structural Variation | Immunohistochemistry - statistics & numerical data | Breast Neoplasms - genetics | Breast Neoplasms - pathology | Bayes Theorem | Chromosome Aberrations | Female | Neoplasm Staging | Relapse | Genetic aspects | Breast cancer | Hormones, Sex | Dystrophin | Diseases | Cancer | Model testing | Tumor markers | Copy number | Estrogens | Estrogen receptors | Hazards | Progesterone | Medical diagnosis | ErbB-2 protein | Tumors | Index Medicus
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights
13. Full Text Comprehensive molecular profiling of lung adenocarcinoma
by Berger, Alice H and Lee, William and Herman, James G and Jurisica, Igor and Wigle, Dennis A and Laird, Peter W and Byers, Lauren Averett and Kandoth, Cyriac and Fulton, Lucinda L and Wilson, Richard K and Fronick, Catrina C and Govindan, Ramaswamy and Balasundaram, Miruna and Butterfield, Yaron S. N and Carlsen, Rebecca and Chu, Andy and Dhalla, Noreen and Moore, Richard A and Schein, Jacqueline E and Sipahimalani, Payal and Holt, Robert A and Marra, Marco A and Brooks, Angela N and Onofrio, Robert C and Zack, Travis and Sougnez, Carrie and Cherniack, Andrew D and Saksena, Gordon and Getz, Gad and Meyerson, Matthew and Pantazi, Angeliki and Chen, Peng-Chieh and Veluvolu, Umadevi and Roach, Jeffrey and Hayes, D. Neil and Perou, Charles M and Maglinte, Dennis T and Van Den Berg, David J and Triche, Timothy and Rosenberg, Mara and DiCara, Daniel and Heiman, David and Lin, Pei and Voet, Douglas and Zou, Lihua and Noble, Michael S and Nazaire, Marc-Danie and Getz, Gad and Dresdner, Gideon and Seshan, Venkatraman E and Shen, Ronglai and Ma, Singer and Haussler, David and Kimes, Patrick K and Hayes, D. Neil and Perou, Charles M and Lu, Yiling and Amos, Christopher I and Paulauskis, Joseph and Tarvin, Katherine and Bryant, Ayesha and Farver, Carol and Iacocca, Mary and Rotin, Daniil and Voronina, Olga and Sica, Gabriel and Kohl, Bernard and Illei, Peter and Rogers, Kristen and Brock, Malcolm V and Rieger-Christ, Kimberly and Sullivan, Travis and Asiedu, Michael K and Kosari, Farhad and Rekhtman, Natasha and Zippile, Paul and Pass, Harvey and Goparaju, Chandra and Parfitt, Jeremy and Sekhon, Harmanjatinder and Cheney, Richard and Morrison, Carl and Gaudioso, Carmelo and Dienemann, Hendrik and Muley, Thomas R and Funkhouser, William K and Yousem, Samuel A and Dacic, Sanja and Schneider, Frank and Watson, Mark A and Clarke, Belinda and Fong, Kwun M and Bowman, Rayleen V and Peters, Solange and Khan, Khurram Z and Pot, David A and Shaw, Kenna R. Mills and Yang, Liming and Illei, Peter and Tsao, Ming-Sound and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network and The Cancer Genome Atlas Research Network
Nature (London), ISSN 0028-0836, 07/2014, Volume 511, Issue 7511, pp. 543 - 550
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Lung Neoplasms - genetics | Oncogenes - genetics | Adenocarcinoma - pathology | Adenocarcinoma of Lung | Genomics | Humans | Gene Expression Regulation, Neoplastic | Lung Neoplasms - pathology | Male | Gene Dosage | Transcriptome - genetics | Mutation - genetics | Molecular Typing | Sex Factors | Cell Cycle Proteins - genetics | Female | Adenocarcinoma - genetics | Adenocarcinoma | Usage | MicroRNA | Death | Research | Nucleotide sequencing | Methylation | Pathology, Molecular | Risk factors | DNA sequencing | Proteins | Genotype & phenotype | Genes | Mortality | Lung cancer | DNA methylation | Genomes | Mutation | Molecular biology | Deoxyribonucleic acid--DNA | Tumors | Index Medicus
Journal Article
Details down arrow
Digital rights down arrow
loading Loading Rights