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Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2005, Volume 33, pp. D178 - D182
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2007, Volume 35, Issue 2, pp. 678 - 686
The level of conservation between two homologous sequences often varies among sequence regions; functionally important domains are more conserved than the... 
SIMILARITIES | STATISTICAL SIGNIFICANCE | SEARCH | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | SCORING MATRICES | LINEAR-SPACE | EFFICIENT | GENOMIC DNA | PROGRAM | SUBSEQUENCES | Sequence Homology, Amino Acid | Sequence Alignment - methods | Computational Biology - methods | Software | Algorithms | Index Medicus | Computational Biology
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 01/2001, Volume 29, Issue 1, pp. 202 - 204
The EMOTIF database is a collection of more than 170 000 highly specific and sensitive protein sequence motifs representing conserved biochemical properties... 
BIOCHEMISTRY & MOLECULAR BIOLOGY | Consensus Sequence | Proteins - genetics | Sequence Homology, Amino Acid | Amino Acid Sequence | Sequence Alignment | Molecular Sequence Data | Software | Internet | Proteins - chemistry | Amino Acid Motifs | Databases, Factual | EMOTIF database | Index Medicus
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2003, Volume 31, Issue 13, pp. 3324 - 3327
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 5/1998, Volume 95, Issue 11, pp. 5865 - 5871
Journal Article
NUCLEIC ACIDS RESEARCH, ISSN 0305-1048, 01/2005, Volume 33, Issue Database issue, pp. D178 - D182
Journal Article
Journal Article
Bioinformatics, ISSN 0266-7061, 1990, Volume 6, Issue 3, pp. 237 - 245
We have increased the sensitivity of DNA and protein sequence database searches by allowing similar but non-identical amino acids or nucleotides to match. In... 
BIOLOGY, MISCELLANEOUS | COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS | Amino Acid Sequence | User-Computer Interface | Software | Base Sequence | Mathematical Computing | Databases, Factual | Index Medicus
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2004, Volume 32, Issue Web Server issue, pp. W204 - W207
The identification of regulatory motifs is important for the study of gene expression. Here we present a suite of programs that we have developed to search for... 
SEQUENCES | ALIGNMENT | IDENTIFICATION | DNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | STRATEGIES | Transcription Factors - metabolism | User-Computer Interface | DNA - chemistry | Algorithms | Regulatory Sequences, Nucleic Acid | Gene Expression Regulation | Transcription, Genetic | Software | DNA - metabolism | Internet | Binding Sites | Index Medicus
Journal Article
Nucleic Acids Research, ISSN 0305-1048, 07/2003, Volume 31, Issue 13, pp. 3328 - 3332
Computational methods such as sequence alignment and motif construction are useful in grouping related proteins into families, as well as helping to annotate... 
DATABASE | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALIGNMENTS | Amino Acids - physiology | Amino Acids - chemistry | Models, Molecular | Amino Acid Motifs | Computer Graphics | Sequence Alignment | Animals | Databases, Protein | Conserved Sequence | Protein Conformation | Software | Internet | Proteins - chemistry | Index Medicus
Journal Article
Bioinformatics, ISSN 1367-4803, 2000, Volume 16, Issue 3, pp. 233 - 244
Motivation: We present techniques for increasing the speed of sequence analysis using scoring matrices. Our techniques are based on calculating for a given... 
MOTIFS | PROTEIN | DATABASE | ALIGNMENT | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | BLOCK SEARCHES | PATTERNS | Probability | Markov Chains | Software | Sequence Analysis - methods | Time Factors | Index Medicus
Journal Article