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Advances and Applications in Bioinformatics and Chemistry, ISSN 1178-6949, 2016, Volume 9, Issue 1, pp. 1 - 11
New molecular modeling approaches, driven by rapidly improving computational platforms, have allowed many success stories for the use of computer-assisted drug... 
Water position | Protein-protein docking | RINs | Structure-based drug design | Quaternary structure prediction | Residue interaction networks | Drugs | Research | Chemical properties | Structure | Protein-protein interactions | Pharmaceutical chemistry | Proteins | Enzymes | Ligands | Quantum physics | Methods
Journal Article
F1000Research, ISSN 2046-1402, 2018, Volume 7, p. 563
Residue interaction networks (RINs) have been shown to be relevant representations of the tertiary or quaternary structures of proteins, in particular thanks... 
Journal Article
F1000Research, ISSN 2046-1402, 2018, Volume 7, p. 563
Residue interaction networks (RINs) have been shown to be relevant representations of the tertiary or quaternary structures of proteins, in particular thanks... 
Centrality analysis | Automation | Cytoscape | Rinspector | Flexibility prediction | Residue interaction network | Protein structure | Structure ensemble
Journal Article
The Journal of biological chemistry, ISSN 0021-9258, 08/2019, Volume 294, Issue 39, pp. 14383 - 14393
β-1,4-Galactosyltransferase 1 (B4GALT1) and ST6 β-galactoside α-2,6-sialyltransferase 1 (ST6GAL1) catalyze the successive addition of terminal β-1,4-linked... 
Life Sciences | Populations and Evolution | Biotechnology | Quantitative Methods | Biochemistry, Molecular Biology | Genomics | Biomolecules | Molecular biology | Molecular Networks | Biodiversity | Systematics, Phylogenetics and taxonomy | Cancer
Journal Article
GENES, ISSN 2073-4425, 03/2019, Volume 10, Issue 3, p. 206
The transcription factor Ets-1 (ETS proto-oncogene 1) shows low expression levels except in specific biological processes like haematopoiesis or angiogenesis.... 
VARIANTS | POLYMERASE-LAMBDA | SEARCH | CYTOSCAPE | Ets-1 | DNA repair | Residue Interaction Networks | biological networks | POLYMORPHISMS | INHIBITION | GENE | GENETICS & HEREDITY | protein-protein interaction | TOPBP1 | EXPRESSION | BINDING | oncoprotein
Journal Article
Frontiers in Molecular Biosciences, ISSN 2296-889X, 10/2018, Volume 5, p. 88
Journal Article
Bioinformatics, ISSN 1367-4803, 01/2018, Volume 34, Issue 2, pp. 294 - 296
Abstract Motivation Protein function is directly related to amino acid residue composition and the dynamics of these residues. Centrality analyses based on... 
VISUALIZATION | PROTEIN STRUCTURES | BIOLOGICAL NETWORKS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | UCSF-CHIMERA | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | Applications Notes
Journal Article
Journal of Physics Condensed Matter, ISSN 0953-8984, 02/2015, Volume 27, Issue 6, pp. 064108 - 6
Journal Article
Journal Article
by Lensink, Marc F and Brysbaert, Guillaume and Nadzirin, Nurul and Velankar, Sameer and Chaleil, Raphaël A.G and Gerguri, Tereza and Bates, Paul A and Laine, Elodie and Carbone, Alessandra and Grudinin, Sergei and Kong, Ren and Liu, Ran‐Ran and Xu, Xi‐Ming and Shi, Hang and Chang, Shan and Eisenstein, Miriam and Karczynska, Agnieszka and Czaplewski, Cezary and Lubecka, Emilia and Lipska, Agnieszka and Krupa, Paweł and Mozolewska, Magdalena and Golon, Łukasz and Samsonov, Sergey and Liwo, Adam and Crivelli, Silvia and Pagès, Guillaume and Karasikov, Mikhail and Kadukova, Maria and Yan, Yumeng and Huang, Sheng‐You and Rosell, Mireia and Rodríguez‐Lumbreras, Luis Angel and Romero‐Durana, Miguel and Díaz‐Bueno, Lucía and Fernandez‐Recio, Juan and Christoffer, Charles and Terashi, Genki and Shin, Woong‐Hee and Aderinwale, Tunde and Raghavendra Maddhuri Venkata Subram, Sai and Kihara, Daisuke and Kozakov, Dima and Vajda, Sandor and Porter, Kathyn and Padhorny, Dzmitry and Desta, Israel and Beglov, Dmitri and Ignatov, Mikhail and Kotelnikov, Sergey and Moal, Iain H and Ritchie, David W and Chauvot de Beauchêne, Isaure and Maigret, Bernard and Devignes, Marie‐Dominique and Echartea, Maria Elisa Ruiz and Barradas‐Bautista, Didier and Cao, Zhen and Cavallo, Luigi and Oliva, Romina and Cao, Yue and Shen, Yang and Baek, Minkyung and Park, Taeyong and Woo, Hyeonuk and Seok, Chaok and Braitbard, Merav and Bitton, Lirane and Scheidman‐Duhovny, Dina and DapkŪnas, Justas and Olechnovič, Kliment and Venclovas, Česlovas and Kundrotas, Petras J and Belkin, Saveliy and Chakravarty, Devlina and Badal, Varsha D and Vakser, Ilya A and Vreven, Thom and Vangaveti, Sweta and Borrman, Tyler and Weng, Zhiping and Guest, Johnathan D and Gowthaman, Ragul and Pierce, Brian G and Xu, Xianjin and Duan, Rui and Qiu, Liming and Hou, Jie and Ryan Merideth, Benjamin and Ma, Zhiwei and Cheng, Jianlin and Zou, Xiaoqin and Koukos, Panos I and Roel‐Touris, Jorge and Ambrosetti, Francesco and Geng, Cunliang and Schaarschmidt, Jörg and Trellet, Mikael E and Melquiond, Adrien S.J and Xue, Li and ...
Proteins: Structure, Function, and Bioinformatics, ISSN 0887-3585, 10/2019
Journal Article
Current Protocols in Bioinformatics, ISSN 1934-3396, 03/2019, Volume 65, Issue 1, pp. e66 - e66
Protein structures inherently contain information that can be used to decipher their functions, but the exploitation of this knowledge is not trivial. We... 
protein structure | residue interaction network | flexibility prediction | centrality analysis
Journal Article
Current protocols in bioinformatics, 11/2018, p. e66
Protein structures inherently contain information that can be used to decipher their functions, but the exploitation of this knowledge is not trivial. We... 
Journal Article
BMC Structural Biology, ISSN 1472-6807, 06/2018, Volume 18, Issue 1
Myelin is a multilayered proteolipid sheath wrapped around selected axons in the nervous system. Its constituent proteins play major roles in forming of the... 
Membrane lipids | Research | Fatty acids | Analysis | Myelin proteins | Protein binding
Journal Article
Journal of Biological Chemistry, ISSN 0021-9258, 09/2015, Volume 290, Issue 38, pp. 23307 - 23319
Journal Article
Journal Article
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