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Scientific Reports, ISSN 2045-2322, 12/2019, Volume 9, Issue 1, pp. 1531 - 10
The objective of this study was to evaluate the most effective method of DNA extraction of oral mouthwash samples for use in microbiome studies that utilize... 
QUALITY | ASSOCIATIONS | ALIGNMENT | PERIODONTITIS | YIELD | MULTIDISCIPLINARY SCIENCES | DISEASE | DIVERSITY | SAMPLES | HEALTH | GENOMIC DNA | Mouthwashes | rRNA 16S | Statistical analysis | Chloroform | Variable region | Microbiomes | Oral cavity | Microbiota | Next-generation sequencing | Primers | Phenols | Bacteria | Deoxyribonucleic acid--DNA | Methods | DNA sequencing
Journal Article
Scientific Reports, ISSN 2045-2322, 12/2018, Volume 8, Issue 1, pp. 15573 - 15
Studies on the microbial communities in non-human primate hosts provide unique insights in both evolution and function of microbes related to human health and... 
VAGINAL MICROBIOME | PREVOTELLA-BIVIA | MULTIDISCIPLINARY SCIENCES | DISEASE | POTENTIAL SIGNIFICANCE | COLONIZATION | GUT MICROBIOTA | HEALTH | RHESUS MACAQUE | HELICOBACTER-PYLORI | BACTERIAL VAGINOSIS | Vagina | Specialization | Microbiota | Microorganisms | rRNA 16S | Microbiomes
Journal Article
Frontiers in Cellular and Infection Microbiology, ISSN 2235-2988, 08/2018, Volume 8, p. 301
Background: Integrated microbiome and metabolomics analyses hold the potential to reveal interactions between host and microbiota in relation to disease risks.... 
Integrative analysis | Metabolomics | Sampling methods | Fecal microbiome | Multi-omics integration | sampling methods | HIGH-FAT DIET | HOST | MICROBIOLOGY | IMMUNOLOGY | BUTYRATE-PRODUCING BACTERIA | DNA EXTRACTION | OBESITY | COMMUNITY | metabolomics | GREENGENES | multi-omics integration | integrative analysis | MICE | SAMPLES | fecal microbiome | Microbiota (Symbiotic organisms) | Metabonomic analysis | Research
Journal Article
by Burk, Robert D and Chen, Zigui and Saller, Charles and Tarvin, Katherine and Carvalho, Andre L and Scapulatempo-Neto, Cristovam and Silveira, Henrique C and Fregnani, José H and Creighton, Chad J and Anderson, Matthew L and Castro, Patricia and Wang, Sophia S and Yau, Christina and Benz, Christopher and Gordon Robertson, A and Mungall, Karen and Lim, Lynette and Bowlby, Reanne and Sadeghi, Sara and Brooks, Denise and Sipahimalani, Payal and Mar, Richard and Ally, Adrian and Clarke, Amanda and Mungall, Andrew J and Tam, Angela and Lee, Darlene and Chuah, Eric and Schein, Jacqueline E and Tse, Kane and Kasaian, Katayoon and Ma, Yussanne and Marra, Marco A and Mayo, Michael and Balasundaram, Miruna and Thiessen, Nina and Dhalla, Noreen and Carlsen, Rebecca and Moore, Richard A and Holt, Robert A and Jones, Steven J. M and Wong, Tina and Pantazi, Angeliki and Parfenov, Michael and Kucherlapati, Raju and Hadjipanayis, Angela and Seidman, Jonathan and Kucherlapati, Melanie and Ren, Xiaojia and Xu, Andrew W and Yang, Lixing and Park, Peter J and Lee, Semin and Rabeno, Brenda and Huelsenbeck-Dill, Lori and Borowsky, Mark and Cadungog, Mark and Iacocca, Mary and Petrelli, Nicholas and Swanson, Patricia and Ojesina, Akinyemi I and Ojesina, Akinyemi I and Ojesina, Akinyemi I and Le, Xuan and Sandusky, George and Adebamowo, Sally N and Akeredolu, Teniola and Adebamowo, Clement and Reynolds, Sheila M and Shmulevich, Ilya and Shelton, Candace and Crain, Daniel and Mallery, David and Curley, Erin and Gardner, Johanna and Penny, Robert and Morris, Scott and Shelton, Troy and Liu, Jia and Lolla, Laxmi and Chudamani, Sudha and Wu, Ye and Birrer, Michael and McLellan, Michael D and Bailey, Matthew H and Miller, Christopher A and Wyczalkowski, Matthew A and Fulton, Robert S and Fronick, Catrina C and Lu, Charles and Mardis, Elaine R and Appelbaum, Elizabeth L and Schmidt, Heather K and Fulton, Lucinda A and Cordes, Matthew G and Li, Tiandao and Ding, Li and Wilson, Richard K and Rader, Janet S and Behmaram, Behnaz and ... and Canc Genome Atlas Res Network and Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University and Research Institute at Nationwide Children's Hospital and University of Alabama at Birmingham and McDonnell Genome Institute at Washington University and Washington University in St Louis and University of Wisconsin School of Medicine &Public Health and National Hospital, Abuja, Nigeria and Baylor College of Medicine and Barretos Cancer Hospital and Indiana University School of Medicine and Ontario Tumour Bank, The Ottawa Hospital and Massachusetts General Hospital and University of New Mexico Health Sciences Center and National Institute on Deafness &Other Communication Disorders and University of North Carolina at Chapel Hill and Buck Institute for Research on Aging and Cancer Genome Atlas Research Network and Medical College of Wisconsin and University of Abuja Teaching Hospital and University of Oklahoma Health Sciences Center and Institute of Human Virology and St Joseph's Candler Health System and University of Pittsburgh and University of Texas MD Anderson Cancer Center and National Cancer Institute and Montefiore Medical Center and University of Southern California and Institute for Systems Biology and University of Washington and Analytical Biological Services and Harvard Medical School and National Human Genome Research Institute and Memorial Sloan Kettering Cancer Center and Medical University of South Carolina and Ontario Tumour Bank, London Health Sciences Centre and SRA International and University of Kansas Medical Center and University of Lausanne and ILSbio, LLC and University of Bergen and University of California, Irvine and Canada's Michael Smith Genome Sciences Centre and International Genomics Consortium and Oregon Health &Science University and NantOmics and Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University and University of São Paulo, Ribeir ão Preto Medical School and HudsonAlpha Institute for Biotechnology and Albert Einstein College of Medicine and Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center and National Institute of Environmental Health Sciences and Van Andel Research Institute and Ontario Tumour Bank, Ontario Institute for Cancer Research and University of California Santa Cruz and Beckman Research Institute of City of Hope and Leidos Biomedical and Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services and The Cancer Genome Atlas Research Network
Nature, ISSN 0028-0836, 03/2017, Volume 543, Issue 7645, pp. 378 - 384
Cervical cancer remains one of the leading causes of cancer-related deaths worldwide. Here we report the extensive molecular characterization of 228 primary... 
EPITHELIAL-MESENCHYMAL-TRANSITION | TRANSCRIPTION FACTORS | BREAST-CANCER | ACCURATE | DNA METHYLATION | QUANTIFICATION | MULTIDISCIPLINARY SCIENCES | 14-3-3-SIGMA | RESISTANCE | EXPRESSION | SIGNATURE | Receptors, Transforming Growth Factor beta - genetics | Proto-Oncogene Proteins p21(ras) - genetics | Carcinoma, Squamous Cell - genetics | Genomics | Humans | APOBEC-1 Deaminase - genetics | Phosphatidylinositol 3-Kinases - metabolism | Molecular Targeted Therapy | Caspase 8 - genetics | Mitogen-Activated Protein Kinase Kinases - metabolism | Human papillomavirus 16 - isolation & purification | Receptor, Transforming Growth Factor-beta Type II | Female | Adenocarcinoma - genetics | Nuclear Proteins - genetics | Protein-Serine-Threonine Kinases - metabolism | PTEN Phosphohydrolase - genetics | Signal Transduction | Programmed Cell Death 1 Ligand 2 Protein - genetics | Protein-Serine-Threonine Kinases - genetics | Uterine Cervical Neoplasms - drug therapy | RNA, Long Noncoding - genetics | Receptor, ErbB-3 - genetics | Transcription Factors - genetics | Uterine Cervical Neoplasms - genetics | Virus Integration | B7-H1 Antigen - genetics | Receptors, Transforming Growth Factor beta - metabolism | HLA-A Antigens - genetics | Proteomics | Mutation | Keratins - genetics | Human papillomavirus 16 - genetics | Uterine Cervical Neoplasms - classification | Causes of | Care and treatment | Genetic aspects | Gene mutations | Health aspects | Cervical cancer | Human papillomavirus | Gynecology | Molecular biology | Cancer therapies | Tumors | Index Medicus
Journal Article
by Berger, Ashton C and Korkut, Anil and Kanchi, Rupa S and Hegde, Apurva M and Lenoir, Walter and Liu, Xiuping and Liu, Wenbin and Liu, Yuexin and Liu, Liang and Liu, Jia and Fan, Cheng and Fan, Huihui and Shen, Hui and Ravikumar, Visweswaran and Rao, Arvind and Schultz, Andre and Schultz, Nikolaus and Li, Xubin and Li, Wei and Li, Jun and Sumazin, Pavel and Williams, Felicia and Williams, Cecilia and Mestdagh, Pieter and Gunaratne, Preethi H and Yau, Christina and Bowlby, Reanne and Robertson, A. Gordon and Tiezzi, Daniel G and Wang, Zhining and Wang, Min and Wang, Jing and Wang, Linghua and Wang, Jioajiao and Wang, Timothy and Wang, Chen and Cherniack, Andrew D and Godwin, Eryn M and Godwin, Andrew K and Kuderer, Nicole M and Rader, Janet S and Zuna, Rosemary and Zuna, Rosemary E and Sood, Anil K and Sood, Anil and Lazar, Alexander J and Ojesina, Akinyemi I and Adebamowo, Clement and Adebamowo, Sally N and Baggerly, Keith A and Chen, Amy and Chen, Chu and Chen, Ting-Wen and Chiu, Hua-Sheng and Lefever, Steve and MacKenzie, Karen and Orsulic, Sandra and Roszik, Jason and Shelley, Carl Simon and Song, Qianqian and Vellano, Christopher P and Wentzensen, Nicolas and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Tarnuzzer, Roy and Yang, Hannah and Yang, Liming and Yang, Ian and Yang, Ju Dong and Zenklusen, Jean C and Zhang, Wei and Zhang, Hongxin and Zhang, Hailei and Zhang, Jiashan (Julia) and Zhang, Lizhi and Zhang, Jiexin and Zhang, Hongzheng and Chudamani, Sudha and Lolla, Laxmi and Naresh, Rashi and Pihl, Todd and Sun, Qiang and Sun, Yichao and Wan, Yunhu and Wu, Ye and Cho, Juok and DeFreitas, Timothy and Frazer, Scott and Gehlenborg, Nils and Getz, Gad and Heiman, David I and Kim, Jaegil and Lawrence, Michael S and Lin, Pei and Meier, Sam and ... and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network and Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS) and Proteomik och nanobioteknologi and Cellulär och klinisk proteomik and Skolan för bioteknologi (BIO) and Proteinvetenskap and KTH and Skolan för kemi, bioteknologi och hälsa (CBH)
Cancer Cell, ISSN 1535-6108, 04/2018, Volume 33, Issue 4, pp. 690 - 705.e9
Journal Article
Cancer Epidemiology Biomarkers and Prevention, ISSN 1055-9965, 12/2018, Volume 27, Issue 12, pp. 1407 - 1415
Background: HPV-associated cervical neoplasia caused by high-risk (HR) HPVs. Methylation of the HPV genome is associated with cervical intraepithelial... 
PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH | DNA METHYLATION | SEQUENCES | BIOMARKER | ONCOLOGY | INFECTION | INTRAEPITHELIAL NEOPLASIA | NATURAL-HISTORY | CANCER | HPV
Journal Article