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1. Full Text Mass Spectrometry-Based Detection and Assignment of Protein Posttranslational Modifications
by Doll, Sophia and Burlingame, Alma L
ACS chemical biology, ISSN 1554-8929, 01/2015, Volume 10, Issue 1, pp. 63 - 71
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Animals | Humans | ras Proteins - antagonists & inhibitors | ras Proteins - metabolism | Proteomics - methods | Mass Spectrometry - methods | Receptor Cross-Talk - physiology | Protein Processing, Post-Translational - physiology | Protein Transport | Index Medicus | Reviews
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2. Full Text Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors
by Sun, Yu and Kim, Tae-Wuk and Wang, Zhi-Yong and Guan, Shenheng and Sun, Ying and Burlingame, Alma L and Tang, Wenqiang and Deng, Zhiping and Shang, Jian-Xiu
Nature cell biology, ISSN 1465-7392, 10/2009, Volume 11, Issue 10, pp. 1254 - 1260
Life Sciences & Biomedicine | Science & Technology | Cell Biology | Genes, Plant | Recombinant Fusion Proteins - metabolism | Phytosterols - pharmacology | Cell Nucleus - metabolism | Plant Proteins - chemistry | Plants, Genetically Modified | Gene Expression Regulation, Plant | Plant Proteins - metabolism | Phosphorylation - drug effects | Nuclear Proteins - genetics | Steroids, Heterocyclic - metabolism | Steroids, Heterocyclic - pharmacology | Amino Acid Sequence | Glycogen Synthase Kinase 3 - chemistry | Glutathione Transferase - metabolism | Receptors, Cell Surface - metabolism | Brassinosteroids | Nuclear Proteins - metabolism | Signal Transduction - genetics | Binding Sites - genetics | Recombinant Fusion Proteins - chemistry | Glycogen Synthase Kinase 3 - metabolism | Nuclear Proteins - chemistry | Subcellular Fractions - metabolism | Cholestanols - pharmacology | Plant Proteins - genetics | Cell Nucleus - genetics | Glycogen Synthase Kinase 3 - genetics | Phytosterols - metabolism | Protein Binding | Signal Transduction - physiology | Mutation | Plant Growth Regulators - pharmacology | Receptors, Cell Surface - genetics | Development | Physiological aspects | Genetic aspects | Cellular signal transduction | Plants | Research | DNA binding proteins | Gene expression | Index Medicus
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3. Full Text The 3A Protein from Multiple Picornaviruses Utilizes the Golgi Adaptor Protein ACBD3 To Recruit PI4KIIIβ
by Alexander L. Greninger and Giselle M. Knudsen and Miguel Betegon and Alma L. Burlingame and Joseph L. DeRisi
Journal of Virology, ISSN 0022-538X, 04/2012, Volume 86, Issue 7, pp. 3605 - 3616
Life Sciences & Biomedicine | Science & Technology | Virology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Miscellaneous | Microbiology | Adaptor Proteins, Signal Transducing - chemistry | Picornaviridae - genetics | Minor Histocompatibility Antigens | Humans | Molecular Sequence Data | Kobuvirus - metabolism | Kobuvirus - genetics | Picornaviridae Infections - virology | Membrane Proteins - metabolism | Picornaviridae Infections - genetics | Picornaviridae Infections - metabolism | Amino Acid Sequence | Cell Line | Membrane Proteins - genetics | Viral Nonstructural Proteins - genetics | Phosphotransferases (Alcohol Group Acceptor) - genetics | Picornaviridae - metabolism | Phosphotransferases (Alcohol Group Acceptor) - metabolism | Picornaviridae Infections - enzymology | Sequence Alignment | Membrane Proteins - chemistry | Adaptor Proteins, Signal Transducing - genetics | Protein Binding | Golgi Apparatus - metabolism | Viral Nonstructural Proteins - metabolism | Adaptor Proteins, Signal Transducing - metabolism | Golgi Apparatus - genetics | Picornaviridae - chemistry | Index Medicus | Cellular Response to Infection
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4. Full Text The CDG1 Kinase Mediates Brassinosteroid Signal Transduction from BRI1 Receptor Kinase to BSU1 Phosphatase and GSK3-like Kinase BIN2
by Kim, Tae-Wuk and Guan, Shenheng and Burlingame, Alma L and Wang, Zhi-Yong
Molecular cell, ISSN 1097-2765, 2011, Volume 43, Issue 4, pp. 561 - 571
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Protein Kinases - metabolism | Arabidopsis Proteins - genetics | Arabidopsis Proteins - physiology | Phosphorylation | Protein Kinases - genetics | Arabidopsis - enzymology | Signal Transduction | Phosphoprotein Phosphatases - metabolism | Protein Interaction Mapping | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | Two-Hybrid System Techniques | Arabidopsis Proteins - chemistry | Protein Kinases - physiology | Cell Membrane - metabolism | Phosphoprotein Phosphatases - chemistry | Phosphatases | Phosphotransferases | Mass spectrometry | Steroids | Index Medicus
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5. Full Text Tau post-translational modifications in wild-type and human amyloid precursor protein transgenic mice
by Morris, Meaghan and Knudsen, Giselle M and Maeda, Sumihiro and Trinidad, Jonathan C and Ioanoviciu, Alexandra and Burlingame, Alma L and Mucke, Lennart
Nature neuroscience, ISSN 1097-6256, 08/2015, Volume 18, Issue 8, pp. 1183 - 1189
Neurosciences | Neurosciences & Neurology | Life Sciences & Biomedicine | Science & Technology | Ubiquitination | Animals | Mass Spectrometry | Mice, Inbred C57BL | Amyloid beta-Protein Precursor - metabolism | tau Proteins - metabolism | Mice, Transgenic | Mice | Acetylation | Methylation | Protein Processing, Post-Translational - physiology | Brain research | Genetic research | Research | Properties | Ubiquitin-proteasome system | Observations | Genetic translation | Tau proteins | Index Medicus
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6. Full Text Glucose Sensor O-GlcNAcylation Coordinates with Phosphorylation to Regulate Circadian Clock
by Kaasik, Krista and Kivimäe, Saul and Allen, Jasmina J and Chalkley, Robert J and Huang, Yong and Baer, Kristin and Kissel, Holger and Burlingame, Alma L and Shokat, Kevan M and Ptáček, Louis J and Fu, Ying-Hui
Cell metabolism, ISSN 1550-4131, 02/2013, Volume 17, Issue 2, pp. 291 - 302
Endocrinology & Metabolism | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Phosphorylation | Humans | CLOCK Proteins - chemistry | Molecular Sequence Data | Substrate Specificity | Glycogen Synthase Kinase 3 beta | CLOCK Proteins - genetics | Drosophila Proteins - metabolism | N-Acetylglucosaminyltransferases - chemistry | Acetylglucosamine - metabolism | Drosophila melanogaster - metabolism | CLOCK Proteins - metabolism | Transfection | Transcription, Genetic | Amino Acid Sequence | Glycosylation | Drosophila Proteins - chemistry | Glycogen Synthase Kinase 3 - metabolism | Adenosine Triphosphate - analogs & derivatives | N-Acetylglucosaminyltransferases - metabolism | Animals | Circadian Clocks | Glucose - metabolism | Mice | Drosophila Proteins - genetics | Proteins | Sleep | Glucose | Dextrose | Index Medicus
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7. Full Text Substrates of IAP Ubiquitin Ligases Identified with a Designed Orthogonal E3 Ligase, the NEDDylator
by Zhuang, Min and Guan, Shenheng and Wang, Haopeng and Burlingame, Alma L and Wells, James A
Molecular cell, ISSN 1097-2765, 01/2013, Volume 49, Issue 2, pp. 273 - 282
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Caspase 7 - metabolism | Consensus Sequence | Humans | Molecular Sequence Data | Ubiquitins - chemistry | Recombinant Fusion Proteins - metabolism | Ubiquitination | Mitochondrial Proteins - metabolism | X-Linked Inhibitor of Apoptosis Protein - chemistry | Protein Engineering | Carrier Proteins - chemistry | Inhibitor of Apoptosis Proteins - metabolism | Protein Interaction Domains and Motifs | Ubiquitins - metabolism | NEDD8 Protein | Phosphoprotein Phosphatases | Amino Acid Sequence | Peptide Fragments - metabolism | Jurkat Cells | Ubiquitin-Protein Ligases - metabolism | Recombinant Fusion Proteins - chemistry | Ubiquitin-Protein Ligases - chemistry | Peptide Fragments - chemistry | Carrier Proteins - metabolism | Mitochondrial Proteins - chemistry | Protein Processing, Post-Translational | Apoptosis | Index Medicus
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8. Full Text αII spectrin forms a periodic cytoskeleton at the axon initial segment and is required for nervous system function
by Huang, Claire Yu-Mei and Zhang, Chuansheng and Ho, Tammy Szu-Yu and Oses-Prieto, Juan and Burlingame, Alma L and Lalonde, Joshua and Noebels, Jeffrey L and Leterrier, Christophe and Rasband, Matthew N
The Journal of neuroscience, ISSN 0270-6474, 11/2017, Volume 37, Issue 47, pp. 11311 - 11322
Spectrin | Axon | Cytoskeleton | Ankyrin | Axon initial segment | Node of ranvier | Neurosciences | Neurosciences & Neurology | Life Sciences & Biomedicine | Science & Technology | Mice, Inbred C57BL | Cells, Cultured | Axons - metabolism | Cercopithecus aethiops | Axons - physiology | Hippocampus - cytology | Ranvier's Nodes - metabolism | Action Potentials | Hippocampus - metabolism | Animals | Gene Deletion | Cytoskeleton - metabolism | Ranvier's Nodes - physiology | Spectrin - genetics | Mice | Spectrin - metabolism | Hippocampus - physiology | COS Cells | Molecular structure | Neurons | Cortex | Central nervous system | Excitability | Nervous system | Clustering | Nodes | Lamination | Microscopy | Neurodegeneration | Proteomics | Ion channels | Nodes of Ranvier | Assembly | Seizures | Index Medicus | Life Sciences | Neurons and Cognition | Neurobiology | axon initial segment | ankyrin | spectrin | axon | cytoskeleton | node of Ranvier
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9. Full Text Western blots versus selected reaction monitoring assays: Time to turn the tables?
by Aebersold, Ruedi and Burlingame, Alma L and Bradshaw, Ralph A
Molecular & cellular proteomics, ISSN 1535-9476, 09/2013, Volume 12, Issue 9, pp. 2381 - 2382
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Peptides - metabolism | Electrophoresis, Polyacrylamide Gel | Humans | Mass Spectrometry | Proteomics | Isotope Labeling | Protein Processing, Post-Translational | Blotting, Western | Index Medicus
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10. Full Text Targeted peptide measurements in biology and medicine: Best practices for mass spectrometry-based assay development using a fit-for-purpose approach
by Carr, Steven A and Abbatiello, Susan E and Ackermann, Bradley L and Borchers, Christoph and Domon, Bruno and Deutsch, Eric W and Grant, Russell P and Hoofnagle, Andrew N and Hüttenhain, Ruth and Koomen, John M and Liebler, Daniel C and Liu, Tao and MacLean, Brendan and Mani, D.R and Mansfield, Elizabeth and Neubert, Hendrik and Paulovich, Amanda G and Reiter, Lukas and Vitek, Olga and Aebersold, Ruedi and Anderson, Leigh and Bethem, Robert and Blonder, Josip and Boja, Emily and Botelho, Julianne and Boyne, Michael and Bradshaw, Ralph A and Burlingame, Alma L and Chan, Daniel and Keshishian, Hasmik and Kuhn, Eric and Kinsinger, Christopher and Lee, Jerry S.H and Lee, Sang-Won and Moritz, Robert and Oses-Prieto, Juan and Rifai, Nader and Ritchie, James and Rodriguez, Henry and Srinivas, Pothur R and Townsend, R. Reid and Van Eyk, Jennifer and Whiteley, Gordon and Wiita, Arun and Weintraub, Susan
Molecular & cellular proteomics, ISSN 1535-9476, 2014, Volume 13, Issue 3, pp. 907 - 917
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Medicine | Guidelines as Topic | Reference Standards | Animals | Peptides - metabolism | Proteomics - standards | Humans | Isotope Labeling | Biological Assay - methods | Biology | Software | Mass Spectrometry - methods | Index Medicus | Technological Innovation and Resources
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