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Frontiers in genetics, ISSN 1664-8021, 2018, Volume 9, p. 485
The TempO-Seq platform allows for targeted transcriptomic analysis and is currently used by many groups to perform high-throughput gene expression analysis.... 
RNA sequencing | Usage | DNA microarrays | Research | Gene expression | microarray | mode of action | RNA-Seq | TempO-Seq | chemicals | S1500
Journal Article
American Journal of Physiology, ISSN 1040-0605, 08/2016, Volume 311, Issue 2, p. L280
  Ozone is a common, potent oxidant pollutant in industrialized nations. Ozone exposure causes airway hyperreactivity, lung hyperpermeability, inflammation,... 
Oxidative stress | Rodents | Lung diseases | Ozone | Pollutants | Immune system
Journal Article
American Journal of Physiology: Lung Cellular and Molecular Physiology, ISSN 1040-0605, 08/2016, Volume 311, Issue 2, pp. L280 - L280
Ozone is a common, potent oxidant pollutant in industrialized nations. Ozone exposure causes airway hyperreactivity, lung hyperpermeability, inflammation, and... 
Journal Article
by Shi, Leming and Campbell, Gregory and Jones, Wendell D and Campagne, Fabien and Wen, Zhining and Walker, Stephen J and Su, Zhenqiang and Chu, Tzu-Ming and Goodsaid, Federico M and Pusztai, Lajos and Shaughnessy, John D and Oberthuer, André and Thomas, Russell S and Paules, Richard S and Fielden, Mark and Barlogie, Bart and Chen, Weijie and Du, Pan and Fischer, Matthias and Furlanello, Cesare and Gallas, Brandon D and Ge, Xijin and Megherbi, Dalila B and Symmans, W Fraser and Wang, May D and Zhang, John and Bitter, Hans and Brors, Benedikt and Bushel, Pierre R and Bylesjo, Max and Chen, Minjun and Cheng, Jie and Cheng, Jing and Chou, Jeff and Davison, Timothy S and Delorenzi, Mauro and Deng, Youping and Devanarayan, Viswanath and Dix, David J and Dopazo, Joaquin and Dorff, Kevin C and Elloumi, Fathi and Fan, Jianqing and Fan, Shicai and Fan, Xiaohui and Fang, Hong and Gonzaludo, Nina and Hess, Kenneth R and Hong, Huixiao and Huan, Jun and Irizarry, Rafael A and Judson, Richard and Juraeva, Dilafruz and Lababidi, Samir and Lambert, Christophe G and Li, Li and Li, Yanen and Li, Zhen and Lin, Simon M and Liu, Guozhen and Lobenhofer, Edward K and Luo, Jun and Luo, Wen and McCall, Matthew N and Nikolsky, Yuri and Pennello, Gene A and Perkins, Roger G and Philip, Reena and Popovici, Vlad and Price, Nathan D and Qian, Feng and Scherer, Andreas and Shi, Tieliu and Shi, Weiwei and Sung, Jaeyun and Thierry-Mieg, Danielle and Thierry-Mieg, Jean and Thodima, Venkata and Trygg, Johan and Vishnuvajjala, Lakshmi and Wang, Sue Jane and Wu, Jianping and Wu, Yichao and Xie, Qian and Yousef, Waleed A and Zhang, Liang and Zhang, Xuegong and Zhong, Sheng and Zhou, Yiming and Zhu, Sheng and Arasappan, Dhivya and Bao, Wenjun and Lucas, Anne Bergstrom and Berthold, Frank and Brennan, Richard J and Buness, Andreas and Catalano, Jennifer G and Chang, Chang and Chen, Rong and Cheng, Yiyu and ... and MAQC Consortium and Umeå universitet and Teknisk-naturvetenskapliga fakulteten and Kemiska institutionen
Nature Biotechnology, ISSN 1087-0156, 08/2010, Volume 28, Issue 8, pp. 827 - 838
Journal Article
Nature Biotechnology, ISSN 1087-0156, 09/2014, Volume 32, Issue 9, pp. 926 - 932
The concordance of RNA-sequencing (RNA-seq) with microarrays for genome-wide analysis of differential gene expression has not been rigorously assessed using a... 
CONSISTENCY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PLATFORMS | GENE-EXPRESSION | SCIENCE | DIFFERENTIAL EXPRESSION ANALYSIS | ARRAYS | REPRODUCIBILITY | Rats | Animals | Sequence Analysis, RNA | Oligonucleotide Array Sequence Analysis | RNA, Messenger - genetics | RNA sequencing | Genetic research | Research | Genetic transcription | Genomes | Models | Ribonucleic acid--RNA | Chemicals
Journal Article
ENVIRONMENTAL HEALTH PERSPECTIVES, ISSN 0091-6765, 03/2004, Volume 112, Issue 4, pp. 495 - 505
The marriage of toxicology and genomics has created not only opportunities but also novel informatics challenges. As with the larger field of gene expression... 
ArrayExpress | MIAME | DATA-MANAGEMENT | toxicogenomics | INFORMATION | STANDARDS | PATTERNS | HYBRIDIZATION | CEBS | EBI | ENVIRONMENTAL SCIENCES | database | HESI | PUBLIC, ENVIRONMENTAL & OCCUPATIONAL HEALTH | TECHNOLOGIES | bioinformatics | GENE-EXPRESSION | TOXICOLOGY | REPOSITORY | NCT | MICROARRAY DATA
Journal Article
by Su, Zhenqiang and Labaj, Pawel P and Li, Sheng and Thierry-Mieg, Jean and Thierry-Mieg, Danielle and Shi, Wei and Wang, Charles and Schroth, Gary P and Setterquist, Robert A and Thompson, John F and Jones, Wendell D and Xiao, Wenzhong and Xu, Weihong and Jensen, Roderick V and Kelly, Reagan and Xu, Joshua and Conesa, Ana and Furlanello, Cesare and Gao, Hanlin and Hong, Huixiao and Jafari, Nadereh and Letovsky, Stan and Liao, Yang and Lu, Fei and Oakeley, Edward J and Peng, Zhiyu and Praul, Craig A and Santoyo-Lopez, Javier and Scherer, Aneas and Shi, Tieliu and Smyth, Gordon K and Staedtler, Frank and Sykacek, Peter and Tan, Xin-Xing and Thompson, E. Aubrey and Vandesompele, Jo and Wang, May D and Wang, Jian and Wolfinger, Russell D and Zavadil, Jiri and Auerbach, Scott S and Bao, Wenjun and Binder, Hans and Blomquist, Thomas and Brilliant, Murray H and Bushel, Pierre R and Cain, Weimin and Catalano, Jennifer G and Chang, Ching-Wei and Chen, Tao and Chen, Geng and Chen, Rong and Chierici, Marco and Chu, Tzu-Ming and Clevert, Djork-Arne and Deng, Youping and Derti, Adnan and Devanarayan, Viswanath and Dong, Zirui and Dopazo, Joaquin and Du, Tingting and Fang, Hong and Fang, Yongxiang and Fasold, Mario and Fernandez, Anita and Fischer, Matthias and Furio-Tari, Peo and Fuscoe, James C and Caiment, Florian and Gaj, Stan and Gandara, Jorge and Gao, Huan and Ge, Weigong and Gondo, Yoichi and Gong, Binsheng and Gong, Meihua and Gong, Zhuolin and Green, Bridgett and Guo, Chao and Guo, Lei and Guo, Li-Wu and Hadfield, James and Hellemans, Jan and Hochreiter, Sepp and Jia, Meiwen and Jian, Min and Johnson, Charles D and Kay, Suzanne and Kleinjans, Jos and Lababidi, Samir and Levy, Shawn and Li, Quan-Zhen and Li, Li and Li, Peng and Li, Yan and Li, Haiqing and Li, Jianying and Li, Shiyong and Lin, Simon M and Lopez, Francisco J and ... and SEQC/MAQC-III Consortium
Nature Biotechnology, ISSN 1087-0156, 09/2014, Volume 32, Issue 9, pp. 903 - 914
We present primary results from the Sequencing Quality Control (SEQC) project, coordinated by the US Food and Drug Administration. Examining Illumina HiSeq,... 
TRANSCRIPTOME | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIAS | GENOME ANNOTATION | DIFFERENTIAL GENE-EXPRESSION | ARRAYS | PCR | Reproducibility of Results | Polymerase Chain Reaction | Sequence Analysis, RNA - standards | RNA sequencing | Genetic research | Methods | Quality control | Quality management | Consortia | Ribonucleic acid--RNA
Journal Article
Toxicological Sciences, ISSN 1096-6080, 01/2011, Volume 120, pp. S225 - S237
As one reflects back through the past 50 years of scientific research, a significant accomplishment was the advance into the genomic era. Basic research... 
Bioinformatics
Journal Article
BMC Genomics, ISSN 1471-2164, 2016, Volume 17, Issue 1, p. 255
Journal Article
Frontiers in genetics, 2012, Volume 3, p. 14
The era of toxicogenomics has introduced a new way of monitoring the effect of environmental stressors and toxicants on biological systems via quantification... 
Journal Article
PLoS ONE, ISSN 1932-6203, 02/2018, Volume 13, Issue 2, pp. e0191105 - e0191105
Journal Article
Mutation Research. Genetic Toxicology and Environmental Mutagenesis, ISSN 1383-5718, 08/2012, Volume 746, Issue 2, p. 104
The use of gene expression profiling in both clinical and laboratory settings would be enhanced by better characterization of variation due to individual,... 
Rodents | Liver | Genomics | Gene expression | Meta-analysis
Journal Article
Toxicological Sciences, ISSN 1096-6080, 2011, Volume 120, Issue 1, pp. S225 - S237
Journal Article
Nature Communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 305 - 13
DNA methylation is an essential epigenetic process in mammals, intimately involved in gene regulation. Here we address the extent to which genetics, sex, and... 
METHYLOME | ELEMENTS | SHAPE | MULTIDISCIPLINARY SCIENCES | SITES | CTCF | IDENTIFICATION | PROMOTER | BINDING | EXPRESSION | CPG-ISLANDS | Bisulfite | Gene regulation | Sex | Parents | Genomes | Gene expression | Loci | Gene sequencing | Pregnancy | Progeny | Offspring | Animals | DNA methylation | Epigenetics | Genetics | Inbreeding | Methylation | Genotypes | Deoxyribonucleic acid--DNA | DNA sequencing | CpG islands
Journal Article