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1. Full Text De-Discovery of the Placenta Microbiome
by Bushman, Frederic D
American journal of obstetrics and gynecology, ISSN 0002-9378, 03/2019, Volume 220, Issue 3, pp. 213 - 214
Life Sciences & Biomedicine | Obstetrics & Gynecology | Science & Technology | Index Medicus | Abridged Index Medicus
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2. Full Text Safe harbours for the integration of new DNA in the human genome
by Sadelain, Michel and Papapetrou, Eirini P and Bushman, Frederic D
Nature reviews. Cancer, ISSN 1474-175X, 01/2012, Volume 12, Issue 1, pp. 51 - 58
Life Sciences & Biomedicine | Oncology | Science & Technology | Dependovirus - genetics | Gene Transfer Techniques | Genetic Therapy | Humans | RNA, Untranslated | Receptors, CCR5 - genetics | Virus Integration | Proteins - genetics | Neoplasms - therapy | Animals | Neoplasms - genetics | Cell Engineering | Mice | Genome, Human | Physiological aspects | Genetic engineering | Safety and security measures | Human chromosomes | Methods | Integration | Gene transfer | DNA | genomics | Genomes | Transgenes | Cancer | Index Medicus
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3. Full Text Retroviral Insertional Mutagenesis in Humans: Evidence for Four Genetic Mechanisms Promoting Expansion of Cell Clones
by Bushman, Frederic D
Molecular therapy, ISSN 1525-0016, 02/2020, Volume 28, Issue 2, pp. 352 - 356
Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Medicine, Research & Experimental | Science & Technology | Research & Experimental Medicine | Genetic Therapy | Promoter Regions, Genetic | Cell Proliferation | Humans | RNA, Messenger - genetics | Gene Silencing | Virus Integration | Genetic Vectors - genetics | Animals | Enhancer Elements, Genetic | Retroviridae - genetics | Mutagenesis, Insertional | 3' Untranslated Regions | Clonal Evolution | Index Medicus
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4. Full Text Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
by Gary D. Wu and Jun Chen and Christian Hoffmann and Kyle Bittinger and Ying-Yu Chen and Sue A. Keilbaugh and Meenakshi Bewtra and Dan Knights and William A. Walters and Rob Knight and Rohini Sinha and Erin Gilroy and Kernika Gupta and Robert Baldassano and Lisa Nessel and Hongzhe Li and Frederic D. Bushman and James D. Lewis
Science (American Association for the Advancement of Science), ISSN 0036-8075, 10/2011, Volume 334, Issue 6052, pp. 105 - 108
Taxa | Metagenomics | Microbiota | Diet | REPORTS | Ribosomal DNA | Nutrients | Prevotella | Fatty acids | Genera | Bacteroides | Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Vertebrates: nervous system and sense organs | Biological and medical sciences | Dietary Carbohydrates - administration & dosage | Cross-Sectional Studies | Humans | Middle Aged | Dietary Fiber - administration & dosage | Child, Preschool | Gastrointestinal Tract - microbiology | Ruminococcus - isolation & purification | Young Adult | Feces - microbiology | Bacteria - isolation & purification | Time Factors | Ruminococcus - classification | Adolescent | Dietary Fats - administration & dosage | Bacteria - classification | Adult | Bacteroides - classification | Prevotella - isolation & purification | Child | Metagenome | Bacteroides - isolation & purification | Prevotella - classification | Physiological aspects | Genetic aspects | Research | Nucleotide sequencing | Health aspects | DNA sequencing | Bacteria | Microorganisms | Feces | Health | Index Medicus
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5. Full Text Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
by Wu, Gary D and Lewis, James D and Hoffmann, Christian and Chen, Ying-Yu and Knight, Rob and Bittinger, Kyle and Hwang, Jennifer and Chen, Jun and Berkowsky, Ronald and Nessel, Lisa and Li, Hongzhe and Bushman, Frederic D
BMC microbiology, ISSN 1471-2180, 2010, Volume 10, Issue 1, pp. 206 - 206
Life Sciences & Biomedicine | Microbiology | Science & Technology | Humans | Middle Aged | Specimen Handling - methods | Gastrointestinal Tract - microbiology | Molecular Sequence Data | Male | Bacteria - genetics | Young Adult | Feces - microbiology | Bacteria - isolation & purification | DNA, Bacterial - genetics | Base Sequence | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adult | Female | Sequence Analysis, DNA - methods | DNA, Ribosomal - genetics | Microbiota (Symbiotic organisms) | Analysis | Research | Nucleotide sequencing | Comparative analysis | Microbial colonies | Methods | Index Medicus
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6. Full Text Intestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis
by Koeth, Robert A and Wang, Zeneng and Levison, Bruce S and Buffa, Jennifer A and Org, Elin and Sheehy, Brendan T and Britt, Earl B and Fu, Xiaoming and Wu, Yuping and Li, Lin and Smith, Jonathan D and Didonato, Joseph A and Chen, Jun and Li, Hongzhe and Wu, Gary D and Lewis, James D and Warrier, Manya and Brown, J Mark and Krauss, Ronald M and Tang, W.H. Wilson and Bushman, Frederic D and Lusis, Aldons J and Hazen, Stanley L
Nature medicine, ISSN 1078-8956, 05/2013, Volume 19, Issue 5, pp. 576 - 585
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Medicine, Research & Experimental | Science & Technology | Cell Biology | Research & Experimental Medicine | Atherosclerosis - physiopathology | Humans | Methylamines - blood | Carnitine - chemistry | Carnitine - metabolism | Cholesterol - metabolism | Choline - chemistry | Desmosterol - metabolism | Meat | Mice, Knockout | Atherosclerosis - etiology | Macrophages - metabolism | Animals | Intestines - microbiology | Time Factors | Mass Spectrometry | Female | Atherosclerosis - microbiology | Mice | Metagenome | Methylamines - metabolism | RNA - metabolism | Physiological aspects | Levocarnitine | Genetic aspects | Research | Microbiota (Symbiotic organisms) | Microbial metabolism | Biomedical research | Diet | Risk factors | Atherosclerosis | Index Medicus
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7. Full Text Inflammation, Antibiotics, and Diet as Environmental Stressors of the Gut Microbiome in Pediatric Crohn’s Disease
by Lewis, James D and Chen, Eric Z and Baldassano, Robert N and Otley, Anthony R and Griffiths, Anne M and Lee, Dale and Bittinger, Kyle and Bailey, Aubrey and Friedman, Elliot S and Hoffmann, Christian and Albenberg, Lindsey and Sinha, Rohini and Compher, Charlene and Gilroy, Erin and Nessel, Lisa and Grant, Amy and Chehoud, Christel and Li, Hongzhe and Wu, Gary D and Bushman, Frederic D
Cell host & microbe, ISSN 1931-3128, 10/2015, Volume 18, Issue 4, pp. 489 - 500
Parasitology | Life Sciences & Biomedicine | Microbiology | Science & Technology | Virology | Dysbiosis - etiology | Inflammation - pathology | Viruses - isolation & purification | Prospective Studies | Diet - adverse effects | Fungi - classification | Humans | Fungi - isolation & purification | Archaea - isolation & purification | Archaea - classification | Crohn Disease - therapy | Viruses - classification | Bacteria - isolation & purification | Gastrointestinal Microbiome - drug effects | Crohn Disease - pathology | Bacteria - classification | Anti-Bacterial Agents - adverse effects | Anti-Bacterial Agents - administration & dosage | Diet - methods | Medical colleges | Antibiotics | Microbiota (Symbiotic organisms) | Analysis | Children's hospitals | Crohn's disease in children | Bacteria | Crohn's disease | Inflammation | Children | Diseases | Index Medicus
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8. Full Text Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production
by Wu, Gary D and Compher, Charlene and Chen, Eric Z and Smith, Sarah A and Shah, Rachana D and Bittinger, Kyle and Chehoud, Christel and Albenberg, Lindsey G and Nessel, Lisa and Gilroy, Erin and Star, Julie and Weljie, Aalim M and Flint, Harry J and Metz, David C and Bennett, Michael J and Li, Hongzhe and Bushman, Frederic D and Lewis, James D
Gut, ISSN 0017-5749, 01/2016, Volume 65, Issue 1, pp. 63 - 72
Gastroenterology & Hepatology | Life Sciences & Biomedicine | Science & Technology | Feces - microbiology | Metabolomics | Diet, Vegan | Cross-Sectional Studies | Diet | United States | Humans | Gastrointestinal Microbiome | Metabolome | Urban Health | Care and treatment | Research | Microbiota (Symbiotic organisms) | Ribosomal RNA | Index Medicus | Abridged Index Medicus
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9. Full Text Optimizing methods and dodging pitfalls in microbiome research
by Kim, Dorothy and Hofstaedter, Casey E and Zhao, Chunyu and Mattei, Lisa and Tanes, Ceylan and Clarke, Erik and Lauder, Abigail and Sherrill-Mix, Scott and Chehoud, Christel and Kelsen, Judith and Conrad, Máire and Collman, Ronald G and Baldassano, Robert and Bushman, Frederic D and Bittinger, Kyle
Microbiome, ISSN 2049-2618, 2017, Volume 5, Issue 1, pp. 52 - 52
Study design | Metagenomics | Environmental contamination | Best practices | Methods | 16S rRNA gene | Shotgun metagenomics | Life Sciences & Biomedicine | Microbiology | Science & Technology | Microbiological Techniques - methods | Microbiota | Reproducibility of Results | Animals | Humans | Research Design - standards | Microbiological Techniques - standards | Pediatrics | Substance abuse treatment | Nucleotide sequence | Gender differences | Genomes | Research | Biomass | Gene expression | Experiments | Contamination | Studies | Prescription drugs | Antibiotics | Diet | Influence | Sexual orientation | Diabetes | Age | Deoxyribonucleic acid--DNA | Index Medicus
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