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1. Full Text Genomic ancestry of North Africans supports back-to-Africa migrations
by Henn, Brenna M and Botigué, Laura R and Gravel, Simon and Wang, Wei and Brisbin, Abra and Byrnes, Jake K and Fadhlaoui-Zid, Karima and Zalloua, Pierre A and Moreno-Estrada, Andres and Bertranpetit, Jaume and Bustamante, Carlos D and Comas, David
PLoS Genetics, ISSN 1553-7390, 01/2012, Volume 8, Issue 1, p. e1002397
North African populations are distinct from sub-Saharan Africans based on cultural, linguistic, and phenotypic attributes; however, the time and the extent of... 
GENETIC-VARIATION | WIDE PATTERNS | ORIGIN | GENETICS & HEREDITY | POPULATION-STRUCTURE | DNA VARIATION | ADMIXTURE | ASSOCIATION | PARKINSONS-DISEASE | Africa, Northern | Gene Flow - genetics | Haplotypes | History, Ancient | European Continental Ancestry Group - genetics | European Continental Ancestry Group - history | Europe | Gene Pool | Genomics | Humans | Genotype | Egypt, Ancient | Genetic Variation | Middle East | DNA, Mitochondrial - genetics | Morocco | African Continental Ancestry Group - history | Africa South of the Sahara - ethnology | Population | Polymorphism, Single Nucleotide | African Continental Ancestry Group - genetics | Emigration and Immigration | Population Dynamics | Emigration and immigration | Africans | Genetic aspects | Research | Demographic aspects | Genomes | Genealogy | Chromosomes | Migration | Variació | Genètica de poblacions humanes | Genètica humana
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2. Full Text Reconstructing the Population Genetic History of the Caribbean
by Moreno-Estrada, Andrés and Gravel, Simon and Zakharia, Fouad and McCauley, Jacob L and Byrnes, Jake K and Gignoux, Christopher R and Ortiz-Tello, Patricia A and Martínez, Ricardo J and Hedges, Dale J and Morris, Richard W and Eng, Celeste and Sandoval, Karla and Acevedo-Acevedo, Suehelay and Norman, Paul J and Layrisse, Zulay and Parham, Peter and Martínez-Cruzado, Juan Carlos and Burchard, Esteban González and Cuccaro, Michael L and Martin, Eden R and Bustamante, Carlos D
PLoS Genetics, ISSN 1553-7390, 11/2013, Volume 9, Issue 11, p. e1003925
The Caribbean basin is home to some of the most complex interactions in recent history among previously diverged human populations. Here, we investigate the... 
CHROMOSOME | MTDNA | GENOME-WIDE PATTERNS | GENETICS & HEREDITY | DIVERSITY | ADMIXTURE | INFERENCE | ANCESTRY | ASSOCIATION | Haplotypes | Genetics, Population | European Continental Ancestry Group - genetics | Hispanic Americans - genetics | DNA, Mitochondrial - genetics | Demography | Gene Flow | Genomics | Humans | Indians, North American - genetics | African Continental Ancestry Group - genetics | Caribbean Region | Population genetics | Research | Studies | Population | Demographics | Genomes
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3. Full Text Reconstructing Native American Migrations from Whole-Genome and Whole-Exome Data
by Gravel, Simon and Zakharia, Fouad and Moreno-Estrada, Andres and Byrnes, Jake K and Muzzio, Marina and Rodriguez-Flores, Juan L and Kenny, Eimear E and Gignoux, Christopher R and Maples, Brian K and Guiblet, Wilfried and Dutil, Julie and Via, Marc and Sandoval, Karla and Bedoya, Gabriel and Oleksyk, Taras K and Ruiz-Linares, Andres and Burchard, Esteban G and Martinez-Cruzado, Juan Carlos and Bustamante, Carlos D and 1000 Genomes Project and The 1000 Genomes Project
PLoS Genetics, ISSN 1553-7390, 2013, Volume 9, Issue 12, p. e1004023
There is great scientific and popular interest in understanding the genetic history of populations in the Americas. We wish to understand when different... 
DISPERSAL | EVOLUTIONARY | POLYMORPHISMS | MTDNA | GENETICS & HEREDITY | POPULATION-STRUCTURE | PATTERNS | DIVERSITY | ADMIXTURE | LOCAL-ANCESTRY | HISTORY | Genetics, Population | European Continental Ancestry Group - genetics | Gene Frequency - genetics | Hispanic Americans - genetics | Puerto Rico | Humans | Chromosome Mapping | Continental Population Groups - genetics | Exome | Mexican Americans - genetics | Indians, North American - genetics | Mexico | African Continental Ancestry Group - genetics | Genome, Human | Human Migration | Human Genome Project | Genetic research | Research | Nucleotide sequencing | Population genetics | DNA sequencing | Migrations of nations | Migració de pobles | Human genome | Aborígens | America | Amèrica | Genoma humà | Indigenous peoples | Scholarships & fellowships | Genomes | Mitochondrial DNA | Genomics | Migration
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4. Full Text Phased whole-genome genetic risk in a family quartet using a major allele reference sequence
by Dewey, Frederick E and Chen, Rong and Cordero, Sergio P and Ormond, Kelly E and Caleshu, Colleen and Karczewski, Konrad J and Whirl-Carrillo, Michelle and Wheeler, Matthew T and Dudley, Joel T and Byrnes, Jake K and Cornejo, Omar E and Knowles, Joshua W and Woon, Mark and Sangkuhl, Katrin and Gong, Li and Thorn, Caroline F and Hebert, Joan M and Capriotti, Emidio and David, Sean P and Pavlovic, Aleksandra and West, Anne and Thakuria, Joseph V and Ball, Madeleine P and Zaranek, Alexander W and Rehm, Heidi L and Church, George M and West, John S and Bustamante, Carlos D and Snyder, Michael and Altman, Russ B and Klein, Teri E and Butte, Atul J and Ashley, Euan A
PLoS Genetics, ISSN 1553-7390, 09/2011, Volume 7, Issue 9, p. e1002280
Whole-genome sequencing harbors unprecedented potential for characterization of individual and family genetic variation. Here, we develop a novel synthetic... 
LEIDEN | PRDM9 | GENOTYPE | DISEASE | GENETICS & HEREDITY | VENOUS THROMBOSIS | FACTOR-V | VII-ACTIVATING PROTEASE | MARBURG-I POLYMORPHISM | CONSTRAINT | ASSOCIATION | Haplotypes | Thrombophilia - genetics | Genetic Predisposition to Disease | Risk Assessment | Humans | Genes, Synthetic | Genotype | Male | DNA Mutational Analysis - methods | Sequence Analysis, DNA | Genetic Variation | Reference Standards | Sequence Alignment | Pedigree | Base Sequence | Alleles | Female | Genome, Human | Genome-Wide Association Study - methods | Quantitative trait loci | Miller-Dieker syndrome | Care and treatment | Usage | Research | Nucleotide sequencing | Risk factors | Ethnicity | Genomics | Risk assessment | Genetics | Genomes | Grants | Methods | Questioning
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5. Full Text Bayesian refinement of association signals for 14 loci in 3 common diseases
by Maller, Julian B and McVean, Gilean and Byrnes, Jake and Vukcevic, Damjan and Palin, Kimmo and Su, Zhan and Howson, Joanna M. M and Auton, Adam and Myers, Simon and Morris, Andrew and Pirinen, Matti and Brown, Matthew A and Burton, Paul R and Caulfield, Mark J and Compston, Alastair and Farrall, Martin and Hall, Alistair S and Hattersley, Andrew T and Hill, Adrian V. S and Mathew, Christopher G and Pembrey, Marcus and Satsangi, Jack and Stratton, Michael R and Worthington, Jane and Craddock, Nick and Hurles, Matthew and Ouwehand, Willem and Parkes, Miles and Rahman, Nazneen and Duncanson, Audrey and Todd, John A and Kwiatkowski, Dominic P and Samani, Nilesh J and Gough, Stephen C. L and McCarthy, Mark I and Deloukas, Panagiotis and Donnelly, Peter and Wellcome Trust Case Control Consor and Wellcome Trust Case Control Consortium and The Wellcome Trust Case Control Consortium
Nature Genetics, ISSN 1061-4036, 12/2012, Volume 44, Issue 12, pp. 1294 - 1301
To further investigate susceptibility loci identified by genome-wide association studies, we genotyped 5,500 SNPs across 14 associated regions in 8,000 samples... 
GENOME | GENETICS & HEREDITY | Genetic Predisposition to Disease | Genome-Wide Association Study | Transcription Factor 7-Like 2 Protein - genetics | Diabetes Mellitus, Type 2 - genetics | Humans | Alpha-Ketoglutarate-Dependent Dioxygenase FTO | CTLA-4 Antigen - genetics | Genetic Loci | Transcription Factors - genetics | Genes, p16 | Homeodomain Proteins - genetics | Cyclin-Dependent Kinase 5 - genetics | Graves Disease - genetics | Proteins - genetics | Cyclin-Dependent Kinase Inhibitor p15 - genetics | tRNA Methyltransferases | Bayes Theorem | Coronary Artery Disease - genetics | Polymorphism, Single Nucleotide | Statistical analysis | Biomedical research | Disease | Thyroid diseases | Probability | Genomes | Gene expression | Experiments | Studies | Confidence intervals | Genetics | Diabetes | Methods
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6. Full Text Estimates of the Heritability of Human Longevity Are Substantially Inflated due to Assortative Mating
by Graham Ruby, J and Ruby, J Graham and Wright, Kevin M and Rand, Kristin A and Rand, Kristin A and Kermany, Amir and Kermany, Amir and Noto, Keith and Noto, Keith and Curtis, Don and Curtis, Don and Varner, Neal and Varner, Neal and Garrigan, Daniel and Garrigan, Daniel and Slinkov, Dmitri and Slinkov, Dmitri and Dorfman, Ilya and Dorfman, Ilya and Granka, Julie M and Granka, Julie M and Byrnes, Jake and Byrnes, Jake and Myres, Natalie and Myres, Natalie and Ball, Catherine and Ball, Catherine
Genetics, ISSN 0016-6731, 11/2018, Volume 210, Issue 3, pp. 1109 - 1124
Human life span is a phenotype that integrates many aspects of health and environment into a single ultimate quantity: the elapsed time between birth and... 
assortative mating | human | life span | heritability | UNITED-STATES | LIFE-SPAN | MULTIFACTORIAL INHERITANCE | BIOLOGICAL INHERITANCE | MODELS | FAMILIES | GENETICS & HEREDITY | PATH-ANALYSIS | HEALTH | CULTURAL TRANSMISSION | SOCIOECONOMIC-STATUS | Reproduction | Pedigree | Humans | Female | Male | Models, Genetic | Longevity - genetics | Assortative mating | Correlation | Phenotypes | Genealogy | Mortality | Families & family life | Longevity | Birth | Estimates | Mating | Genotype & phenotype | Life span | Aging | Genetics | Heritability | Inheritances | Investigations
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7. Full Text Term pregnancies and the clinical characteristics of multiple sclerosis: a population based study
by Ramagopalan, Sreeram and Yee, Irene and Byrnes, Jake and Guimond, Colleen and Ebers, George and Sadovnick, Dessa
Journal of Neurology, Neurosurgery & Psychiatry, ISSN 0022-3050, 08/2012, Volume 83, Issue 8, pp. 793 - 795
ObjectivePregnancy has a well documented effect on relapse risk in multiple sclerosis (MS). Prospective studies have reported a significant decline by... 
SURGERY | RELAPSE | PSYCHIATRY | GUIDELINES | DISEASE | DISABILITY | NATURAL-HISTORY | DIAGNOSTIC-CRITERIA | ONSET | CLINICAL NEUROLOGY | Pregnancy Complications - pathology | Humans | Activities of Daily Living | Pregnancy | Young Adult | Maternal Age | Age of Onset | Multiple Sclerosis - pathology | Adult | Female | Multiple Sclerosis - etiology | Parity | Pregnancy Complications - epidemiology | Pregnancy Outcome | Cohort Studies | Multiple sclerosis | Care and treatment | Diagnosis | Risk factors | Studies | Womens health | Medical records | Families & family life | Births | Long term | Age
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8. Full Text Clustering of 770,000 genomes reveals post-colonial population structure of North America
by Han, Eunjung and Carbonetto, Peter and Curtis, Ross E and Wang, Yong and Granka, Julie M and Byrnes, Jake and Noto, Keith and Kermany, Amir R and Myres, Natalie M and Barber, Mathew J and Rand, Kristin A and Song, Shiya and Roman, Theodore and Battat, Erin and Elyashiv, Eyal and Guturu, Harendra and Hong, Eurie L and Chahine, Kenneth G and Ball, Catherine A
Nature Communications, ISSN 2041-1723, 02/2017, Volume 8, Issue 1, p. 14238
Despite strides in characterizing human history from genetic polymorphism data, progress in identifying genetic signatures of recent demography has been... 
JEWISH | WIDE PATTERNS | ADMIXTURE | ANCESTRY | MULTIDISCIPLINARY SCIENCES | Gene Flow - genetics | Demography - methods | Demography - statistics & numerical data | United States - ethnology | Humans | Population Dynamics - statistics & numerical data | Genotyping Techniques | Sequence Analysis, DNA | Haplotypes - genetics | Population Dynamics - trends | Genetics, Population - methods | Polymorphism, Single Nucleotide | Emigrants and Immigrants | Population - genetics | Cluster Analysis
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9. Full Text PCAdmix: Principal Components-Based Assignment of Ancestry Along Each Chromosome in Individuals with Admixed Ancestry from Two or More Populations
by Abra Brisbin and Katarzyna Bryc and Jake Byrnes and Fouad Zakharia and Larsson Omberg and Jeremiah Degenhardt and Andrew Reynolds and Harry Ostrer and Jason G. Mezey and Carlos D. Bustamante
Human Biology, ISSN 0018-7143, 2012, Volume 84, Issue 4, pp. 343 - 364
Abstract Identifying ancestry along each chromosome in admixed individuals provides a wealth of information for understanding the population genetic history of... 
PRINCIPAL COMPONENTS ANALYSIS (PCA) | HAPLOTYPE-BASED | ADMIXTURE | FORWARD-BACKWARD ALGORITHM | LOCAL ANCESTRY DECONVOLUTION | Haplotypes | Metagenomics | Population mean | Cultural values | Admixtures | Ancestry | Genomes | Chromosomes | Population genetics | Hispanics | Heredity, Human | Mathematical models | Variation | Human population genetics | Human genetics | Haplotype-based | Principal components analysis (PCA) | Local ancestry deconvolution | Admixture | Forward-backward algorithm | GENOME-WIDE PATTERNS | GENOTYPE | BIOLOGY | GENETICS & HEREDITY | AFRICAN-AMERICANS | INFERENCE | ANTHROPOLOGY | United States | Genomics | Humans | Phylogeography | Genotype | Continental Population Groups - genetics | Principal Component Analysis - methods | Algorithms | Computer Simulation | Chromosomes, Human | Models, Genetic | Polymorphism, Single Nucleotide | Population Dynamics | Physiological aspects | Principal components analysis | Research | Studies | Accuracy | Genealogy | African Americans | Genetics | Population | Methods | Forward-Backward Algorithm | Haplotype-Based | Local Ancestry Deconvolution | Principal Components Analysis (Pca)
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10. Full Text A global reference for human genetic variation
by Altshuler, D.M and Albers, C.A and Abecasis, G.R and et al and Genomes Project Consortium and 1000 Genomes Project Consortium and The 1000 Genomes Project Consortium
Nature, ISSN 0028-0836, 2015, Volume 526, Issue 7571, pp. 68 - 74
The 1000 Genomes Project set out to provide a comprehensive description of common human genetic variation by applying whole-genome sequencing to a diverse set... 
BAYES FACTORS | INDIVIDUALS | COMPLEMENT FACTOR-H | POPULATION HISTORY | MULTIDISCIPLINARY SCIENCES | MUTATION | DISEASE | SUSCEPTIBILITY | MACULAR DEGENERATION | VARIANT | GENOME-WIDE ASSOCIATION | Rare Diseases - genetics | Genome-Wide Association Study | Datasets as Topic | Demography | Disease Susceptibility | Physical Chromosome Mapping | Humans | Genetics, Population - standards | Genomics - standards | Genotype | INDEL Mutation - genetics | Sequence Analysis, DNA | Genome, Human - genetics | Haplotypes - genetics | Exome - genetics | Reference Standards | Genetics, Medical | Internationality | Polymorphism, Single Nucleotide - genetics | Genetic Variation - genetics | High-Throughput Nucleotide Sequencing | Quantitative Trait Loci - genetics | Genetic research | Nucleotide sequencing | Observations | Genetic variation | Methods | DNA sequencing | Studies | Haplotypes | Genotype & phenotype | Accuracy | Genealogy | Population | Genomes | Genetic diversity | Mitochondrial DNA | Binding sites
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