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1963, Bibliotheca Neerlandica, 171
Book
International Journal of Parallel Programming, ISSN 0885-7458, 2018, Volume 47, Issue 3, pp. 388 - 402
Journal Article
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), ISSN 0302-9743, 2003, Volume 2778, pp. 375 - 384
With an aim to understand the information encoded by DNA sequences, databases containing large amount of DNA sequence information are frequently compared and... 
COMPUTER SCIENCE, THEORY & METHODS
Journal Article
IEEE Transactions on Parallel and Distributed Systems, ISSN 1045-9219, 05/2013, Volume 24, Issue 5, pp. 1009 - 1021
Journal Article
INTERNATIONAL JOURNAL OF PARALLEL PROGRAMMING, ISSN 0885-7458, 04/2019, Volume 47, Issue 2, pp. 296 - 316
The well-known Smith-Waterman (SW) algorithm is the most commonly used method for local sequence alignments, but its acceptance is limited by the computational... 
Intel-AVX512 | SEQUENCE | Smith-Waterman | Xeon-Phi | Intel-KNL | PROTEIN DATABASE SEARCH | COMPUTER SCIENCE, THEORY & METHODS | SIMD | Bioinformatics | Electronic components industry | Algorithms | Multiprocessing | Mathematical optimization
Journal Article
Concurrency and Computation: Practice and Experience, ISSN 1532-0626, 12/2015, Volume 27, Issue 18, pp. 5517 - 5537
Summary Alignment is essential in many areas such as biological, chemical and criminal forensics. The well‐known Smith–Waterman (SW) algorithm is able to... 
Smith–Waterman | heterogeneous computing | HPC | Intel Xeon Phi | Bioinformatics | power consumption | Smith-Waterman | COMPUTER SCIENCE, SOFTWARE ENGINEERING | SEQUENCE ALIGNMENT | GENERATION | COMPUTER SCIENCE, THEORY & METHODS | DATABASE SEARCHES | Repositories | Alignment | Algorithms | Architecture | Computation | Forensic engineering | Biological | Energy management
Journal Article
BMC Systems Biology, ISSN 1752-0509, 11/2018, Volume 12, Issue Suppl 5, pp. 96 - 53
Journal Article
AIP Conference Proceedings, ISSN 0094-243X, 09/2017, Volume 1885, Issue 1
This paper presents an optimized design of Processing Element (PE) of Systolic Array (SA) which implements affine gap penalty Smith Waterman (SW) algorithm on... 
Journal Article
IEEE Transactions on Circuits and Systems II: Express Briefs, ISSN 1549-7747, 12/2007, Volume 54, Issue 12, pp. 1077 - 1081
Journal Article
BioMed Research International, ISSN 2314-6133, 2015, Volume 2015, pp. 185179 - 10
Sequence alignment lies at heart of the bioinformatics. The Smith-Waterman algorithm is one of the key sequence search algorithms and has gained popularity due... 
ACCELERATION | MEDICINE, RESEARCH & EXPERIMENTAL | ALIGNMENT | HARDWARE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | ALGORITHM | Sequence Alignment - methods | Algorithms | Databases, Protein | Humans | Computational Biology | Software | Databases, Nucleic Acid | Usage | Equipment and supplies | Graphics coprocessors | Nucleotide sequencing | Methods | DNA sequencing
Journal Article
BioMed Research International, ISSN 2314-6133, 2013, Volume 2013, pp. 721738 - 8
As the conventional means of analyzing the similarity between a query sequence and database sequences, the Smith-Waterman algorithm is feasible for a database... 
ACCELERATION | MEDICINE, RESEARCH & EXPERIMENTAL | HARDWARE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE ALIGNMENT | SPEED-UP | Computer Graphics | Algorithms | Internet | Time Factors | Databases, Protein | Humans
Journal Article
International Journal of Genomics, ISSN 2314-436X, 2015, Volume 2015, pp. 1 - 12
The Smith-Waterman (SW) algorithm has been widely utilized for searching biological sequence databases in bioinformatics. Recently, several works have adopted... 
BIOTECHNOLOGY & APPLIED MICROBIOLOGY | SEQUENCE ALIGNMENT | BIOCHEMISTRY & MOLECULAR BIOLOGY | ALGORITHM | GENETICS & HEREDITY
Journal Article