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Nature Biotechnology, ISSN 1087-0156, 09/2014, Volume 32, Issue 9, pp. 926 - 932
The concordance of RNA-sequencing (RNA-seq) with microarrays for genome-wide analysis of differential gene expression has not been rigorously assessed using a... 
CONSISTENCY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | PLATFORMS | GENE-EXPRESSION | SCIENCE | DIFFERENTIAL EXPRESSION ANALYSIS | ARRAYS | REPRODUCIBILITY | Rats | Animals | Sequence Analysis, RNA | Oligonucleotide Array Sequence Analysis | RNA, Messenger - genetics | RNA sequencing | Genetic research | Research | Genetic transcription | Genomes | Models | Ribonucleic acid--RNA | Chemicals
Journal Article
by Su, Zhenqiang and Labaj, Pawel P and Li, Sheng and Thierry-Mieg, Jean and Thierry-Mieg, Danielle and Shi, Wei and Wang, Charles and Schroth, Gary P and Setterquist, Robert A and Thompson, John F and Jones, Wendell D and Xiao, Wenzhong and Xu, Weihong and Jensen, Roderick V and Kelly, Reagan and Xu, Joshua and Conesa, Ana and Furlanello, Cesare and Gao, Hanlin and Hong, Huixiao and Jafari, Nadereh and Letovsky, Stan and Liao, Yang and Lu, Fei and Oakeley, Edward J and Peng, Zhiyu and Praul, Craig A and Santoyo-Lopez, Javier and Scherer, Aneas and Shi, Tieliu and Smyth, Gordon K and Staedtler, Frank and Sykacek, Peter and Tan, Xin-Xing and Thompson, E. Aubrey and Vandesompele, Jo and Wang, May D and Wang, Jian and Wolfinger, Russell D and Zavadil, Jiri and Auerbach, Scott S and Bao, Wenjun and Binder, Hans and Blomquist, Thomas and Brilliant, Murray H and Bushel, Pierre R and Cain, Weimin and Catalano, Jennifer G and Chang, Ching-Wei and Chen, Tao and Chen, Geng and Chen, Rong and Chierici, Marco and Chu, Tzu-Ming and Clevert, Djork-Arne and Deng, Youping and Derti, Adnan and Devanarayan, Viswanath and Dong, Zirui and Dopazo, Joaquin and Du, Tingting and Fang, Hong and Fang, Yongxiang and Fasold, Mario and Fernandez, Anita and Fischer, Matthias and Furio-Tari, Peo and Fuscoe, James C and Caiment, Florian and Gaj, Stan and Gandara, Jorge and Gao, Huan and Ge, Weigong and Gondo, Yoichi and Gong, Binsheng and Gong, Meihua and Gong, Zhuolin and Green, Bridgett and Guo, Chao and Guo, Lei and Guo, Li-Wu and Hadfield, James and Hellemans, Jan and Hochreiter, Sepp and Jia, Meiwen and Jian, Min and Johnson, Charles D and Kay, Suzanne and Kleinjans, Jos and Lababidi, Samir and Levy, Shawn and Li, Quan-Zhen and Li, Li and Li, Peng and Li, Yan and Li, Haiqing and Li, Jianying and Li, Shiyong and Lin, Simon M and Lopez, Francisco J and ... and SEQC/MAQC-III Consortium
Nature Biotechnology, ISSN 1087-0156, 09/2014, Volume 32, Issue 9, pp. 903 - 914
We present primary results from the Sequencing Quality Control (SEQC) project, coordinated by the US Food and Drug Administration. Examining Illumina HiSeq,... 
TRANSCRIPTOME | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIAS | GENOME ANNOTATION | DIFFERENTIAL GENE-EXPRESSION | ARRAYS | PCR | Reproducibility of Results | Polymerase Chain Reaction | Sequence Analysis, RNA - standards | RNA sequencing | Genetic research | Methods | Quality control | Quality management | Consortia | Ribonucleic acid--RNA
Journal Article
Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, 02/2013, Volume 110, Issue 6, pp. 2306 - 2311
Viral tumor models have significantly contributed to our understanding of oncogenic mechanisms. How transforming delta-retroviruses induce malignancy, however,... 
MicroRNA | Messenger RNA | RNA | B lymphocytes | Proviruses | Viruses | Sheep | Bovine leukemia virus | Tumors | High throughput nucleotide sequencing | Retrovirus silencing | Oncogenesis | Noncoding RNA | HTLV-1 | TRANSFORMATION | VIRAL GENE-EXPRESSION | noncoding RNA | LYMPHOID MALIGNANCY | CHROMATIN | RNA-POLYMERASE III | MULTIDISCIPLINARY SCIENCES | BOVINE LEUKEMIA-VIRUS | SHEEP | oncogenesis | LEUKEMOGENESIS | CHRONIC LYMPHOCYTIC-LEUKEMIA | retrovirus silencing | BLV-TAX ONCOPROTEIN | Leukemia, B-Cell - veterinary | Leukemia Virus, Bovine - genetics | Enzootic Bovine Leukosis - genetics | Enzootic Bovine Leukosis - virology | Humans | Molecular Sequence Data | MicroRNAs - metabolism | Lymphoma, B-Cell - genetics | RNA, Neoplasm - metabolism | RNA, Viral - genetics | Cattle | Base Sequence | Leukemia, B-Cell - virology | Lymphoma, B-Cell - virology | Human T-lymphotropic virus 1 - genetics | RNA, Viral - metabolism | Nucleic Acid Conformation | Terminal Repeat Sequences | Disease Models, Animal | Lymphoma, B-Cell - veterinary | Argonaute Proteins - metabolism | Gene Expression | Sheep Diseases - genetics | Leukemia-Lymphoma, Adult T-Cell - genetics | Sheep Diseases - virology | RNA Polymerase III - metabolism | Leukemia-Lymphoma, Adult T-Cell - virology | Sequence Homology, Nucleic Acid | Animals | RNA, Viral - chemistry | Sequence Analysis, RNA | Leukemia, B-Cell - genetics | Cell Line, Tumor | RNA, Neoplasm - genetics | MicroRNAs - genetics | MicroRNAs - chemistry | High Mobility Group Proteins - genetics | Biological Sciences
Journal Article
PLoS ONE, ISSN 1932-6203, 05/2017, Volume 12, Issue 5, p. e0177928
MicroRNAs (miRNAs) released into the peripheral circulation upon cellular injury have shown a promise as a new class of tissue-specific biomarkers. We were... 
CIRCULATING MICRORNAS | HEPATITIS-B-VIRUS | POTENTIAL BIOMARKERS | CIRRHOSIS | MULTIDISCIPLINARY SCIENCES | SEQUENCE | MIRNAS | ACETAMINOPHEN HEPATOTOXICITY | IDENTIFICATION | EXPRESSION | REVEALS | Genetic Predisposition to Disease | Hepatitis B - genetics | Diabetes Mellitus, Type 2 - genetics | Humans | Gene Expression Regulation | Gene Expression Profiling - methods | Male | Biomarkers - blood | Chemical and Drug Induced Liver Injury - genetics | Gene Regulatory Networks | Adult | Female | MicroRNAs - blood | High-Throughput Nucleotide Sequencing - methods | Liver Cirrhosis - genetics | Liver | MicroRNA | Research | Multiplexing | Heart | Brain | Disease | Pathogenesis | Alcohol | Nucleotides | Bilirubin | Glucose | Family medical history | Males | Blood | Proteins | Hepatitis | Alterations | Developmental stages | Bioindicators | Inhibition | Hepatotoxicity | Gene expression | Metabolism | Insulin | Beta cells | Pathology | Infectious diseases | Blood circulation | Acetaminophen | Biomarkers | Mice | Adenylation | Liver cirrhosis | Metabolic disorders | Health care | Oxidative stress | Alkaline phosphatase | Pneumonia | 3-Aminobutyric acid | Arches | Toxicity | Viruses | Infections | Drug overdose | Kinases | Analgesics | Safety | Signatures | Product safety | Heart diseases | Injuries | Age | Antigen presentation | Alanine | Nucleotide sequence | Research & development--R&D | Diabetes mellitus | Nitrogen | Ribonucleic acid--RNA | Chemotaxis | Adhesion | Biological activity | Cell death | Biopsy | MicroRNAs | Aspartate aminotransferase | Interferon | Overdose | Diabetes | Safety research | Females | Brain injury | RNA | Research & development | R&D | Ribonucleic acid | Lymphocytes B
Journal Article
Journal Article
Carcinogenesis, ISSN 0143-3334, 01/2014, Volume 35, Issue 1, pp. 201 - 207
Journal Article