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1. Full Text A framework for human microbiome research
by Methé, Barbara A and Nelson, Karen E and Pop, Mihai and Creasy, Heather H and Giglio, Michelle G and Huttenhower, Curtis and Gevers, Dirk and Petrosino, Joseph F and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien R and Brooks, Paul and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, W and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 215 - 221
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Morphology, structure, chemical composition | Microbiology | Bacteriology | Young Adult | Reference Standards | Humans | Adolescent | Metagenomics - methods | RNA, Ribosomal, 16S - genetics | Adult | Female | Male | Statistics as Topic | Bacteria - genetics | Metagenome | Genetic research | Microbiological research | Genomes | Research | Microbiota (Symbiotic organisms) | Studies | Medicine | Publications | Taxonomy | Genomics | Data processing | Manuscripts | Index Medicus
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2. Full Text Structure, function and diversity of the healthy human microbiome
by Huttenhower, Curtis and Gevers, Dirk and Knight, Rob and Abubucker, Sahar and Badger, Jonathan H and Chinwalla, Asif T and Creasy, Heather H and Earl, Ashlee M and Fitzgerald, Michael G and Fulton, Robert S and Giglio, Michelle G and Hallsworth-Pepin, Kymberlie and Lobos, Elizabeth A and Madupu, Ramana and Magrini, Vincent and Martin, John C and Mitreva, Makedonka and Muzny, Donna M and Sodergren, Erica J and Versalovic, James and Wollam, Aye M and Worley, Kim C and Wortman, Jennifer R and Young, Sarah K and Zeng, Qiandong and Aagaard, Kjersti M and Abolude, Olukemi O and Allen-Vercoe, Emma and Alm, Eric J and Alvarado, Lucia and Andersen, Gary L and Anderson, Scott and Appelbaum, Elizabeth and Arachchi, Harindra M and Armitage, Gary and Arze, Cesar A and Ayvaz, Tulin and Baker, Carl C and Begg, Lisa and Belachew, Tsegahiwot and Bhonagiri, Veena and Bihan, Monika and Blaser, Martin J and Bloom, Toby and Bonazzi, Vivien and Paul Brooks, J and Buck, Gregory A and Buhay, Christian J and Busam, Dana A and Campbell, Joseph L and Canon, Shane R and Cantarel, Brandi L and Chain, Patrick S. G and Chen, I-Min A and Chen, Lei and Chhibba, Shaila and Chu, Ken and Ciulla, Dawn M and Clemente, Jose C and Clifton, Sandra W and Conlan, Sean and Crabtree, Jonathan and Cutting, Mary A and Davidovics, Noam J and Davis, Catherine C and Desantis, Todd Z and Deal, Carolyn and Delehaunty, Kimberley D and Dewhirst, Floyd E and Deych, Elena and Ding, Yan and Dooling, David J and Dugan, Shannon P and Michael Dunne, Wm and Scott Durkin, A and Edgar, Robert C and Erlich, Rachel L and Farmer, Candace N and Farrell, Ruth M and Faust, Karoline and Feldgarden, Michael and Felix, Victor M and Fisher, Sheila and Fodor, Anthony A and Forney, Larry J and Foster, Leslie and Di Francesco, Valentina and Friedman, Jonathan and Friedrich, Dennis C and Fronick, Catrina C and Fulton, Lucinda L and Gao, Hongyu and Garcia, Nathalia and Giannoukos, Georgia and Giblin, Christina and Giovanni, Maria Y and Goldberg, Jonathan M and Goll, Johannes and Gonzalez, Antonio and Griggs, Allison and ... and Human Microbiome Project Consortiu and Human Microbiome Project Consortium and The Human Microbiome Project Consortium and Joint Genome Institute (JGI)
Nature (London), ISSN 0028-0836, 06/2012, Volume 486, Issue 7402, pp. 207 - 214
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Fundamental and applied biological sciences. Psychology | Biological and medical sciences | Morphology, structure, chemical composition | Microbiology | Bacteriology | Metagenomics | Health | Humans | Male | Biodiversity | Bacteria - genetics | Young Adult | Phenotype | Ecosystem | Adolescent | Bacteria - classification | RNA, Ribosomal, 16S - genetics | Adult | Female | Metabolic Networks and Pathways - physiology | Metagenome | Microbiota (Symbiotic organisms) | Research | Biological diversity | Disease | Habitats | Taxonomy | Data processing | Skin | Life sciences | Genomes | Index Medicus
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3. Full Text Special Issue on Data-Intensive Scalable Computing Systems
by Roth, Philip C and Canon, R. Shane and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Parallel computing, ISSN 0167-8191, 01/2017, Volume 61, Issue C, pp. 1 - 2
Computer Science, Theory & Methods | Technology | Computer Science | Science & Technology | MATHEMATICS AND COMPUTING
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4. Full Text KBase: The United States department of energy systems biology knowledgebase
by Arkin, Adam P and Cottingham, Robert W and Henry, Christopher S and Harris, Nomi L and Stevens, Rick L and Maslov, Sergei and Dehal, Paramvir and Ware, Doreen and Perez, Fernando and Canon, Shane and Sneddon, Michael W and Henderson, Matthew L and Riehl, William J and Murphy-Olson, Dan and Chan, Stephen Y and Kamimura, Roy T and Kumari, Sunita and Drake, Meghan M and Brettin, Thomas S and Glass, Elizabeth M and Chivian, Dylan and Gunter, Dan and Weston, David J and Allen, Benjamin H and Baumohl, Jason and Best, Aaron A and Bowen, Ben and Brenner, Steven E and Bun, Christopher C and Chandonia, John-Marc and Chia, Jer-Ming and Colasanti, Ric and Conrad, Neal and Davis, James J and Davison, Brian H and Dejongh, Matthew and Devoid, Scott and Dietrich, Emily and Dubchak, Inna and Edirisinghe, Janaka N and Fang, Gang and Faria, José P and Frybarger, Paul M and Gerlach, Wolfgang and Gerstein, Mark and Greiner, Annette and Gurtowski, James and Haun, Holly L and He, Fei and Jain, Rashmi and Joachimiak, Marcin P and Keegan, Kevin P and Kondo, Shinnosuke and Kumar, Vivek and Land, Miriam L and Meyer, Folker and Mills, Marissa and Novichkov, Pavel S and Oh, Taeyun and Olsen, Gary J and Olson, Robert and Parrello, Bruce and Pasternak, Shiran and Pearson, Erik and Poon, Sarah S and Price, Gavin A and Ramakrishnan, Srividya and Ranjan, Priya and Ronald, Pamela C and Schatz, Michael C and Seaver, Samuel M.D and Shukla, Maulik and Sutormin, Roman A and Syed, Mustafa H and Thomason, James and Tintle, Nathan L and Wang, Daifeng and Xia, Fangfang and Yoo, Hyunseung and Yoo, Shinjae and Yu, Dantong and Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States) and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Nature biotechnology, ISSN 1087-0156, 07/2018, Volume 36, Issue 7, pp. 566 - 569
Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Technology application | Usage | Databases | Genomics | Government agencies | Energy policy | Knowledge base | Index Medicus | KNOWLEDGE MANAGEMENT AND PRESERVATION | BASIC BIOLOGICAL SCIENCES | MATHEMATICS AND COMPUTING | Software | Data integration | Computational platforms and environments
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5. Full Text The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
by Seaver, Samuel M D and Liu, Filipe and Zhang, Qizhi and Jeffryes, James and Faria, José P and Edirisinghe, Janaka N and Mundy, Michael and Chia, Nicholas and Noor, Elad and Beber, Moritz E and Best, Aaron A and DeJongh, Matthew and Kimbrel, Jeffrey A and D'haeseleer, Patrik and McCorkle, Sean R and Bolton, Jay R and Pearson, Erik and Canon, Shane and Wood-Charlson, Elisha M and Cottingham, Robert W and Arkin, Adam P and Henry, Christopher S and Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Nucleic acids research, ISSN 0305-1048, 01/2021, Volume 49, Issue D1, pp. D575 - D588
Index Medicus
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6. Full Text RANK rewires energy homeostasis in lung cancer cells and drives primary lung cancer
by Rao, Shuan and Sigl, Verena and Wimmer, Reiner Alois and Novatchkova, Maria and Jais, Alexander and Wagner, Gabriel and Handschuh, Stephan and Uribesalgo, Iris and Hagelkruys, Astrid and Kozieradzki, Ivona and Tortola, Luigi and Nitsch, Roberto and Cronin, Shane J and Orthofer, Michael and Branstetter, Daniel and Canon, Jude and Rossi, John and D’Arcangelo, Manolo and Botling, Johan and Micke, Patrick and La Fleur, Linnea and Edlund, Karolina and Bergqvist, Michael and Ekman, Simon and Lendl, Thomas and Popper, Helmut and Takayanagi, Hiroshi and Kenner, Lukas and Hirsch, Fred R and Dougall, William and Penninger, Josef M
Genes & development, ISSN 0890-9369, 10/2017, Volume 31, Issue 20, pp. 2099 - 2111
Energy homeostasis | Lung cancer stem-like cells | RANK | Lung cancer | Genetics & Heredity | Life Sciences & Biomedicine | Developmental Biology | Science & Technology | Cell Biology | Lung Neoplasms - drug therapy | Receptor Activator of Nuclear Factor-kappa B - antagonists & inhibitors | Proto-Oncogene Proteins p21(ras) - genetics | Humans | Lung Neoplasms - metabolism | Cells, Cultured | Homeostasis | Male | Alveolar Epithelial Cells - metabolism | Mitochondria - metabolism | Receptor Activator of Nuclear Factor-kappa B - physiology | Gonadal Steroid Hormones - physiology | Animals | Cell Respiration | Energy Metabolism | Neoplastic Stem Cells - metabolism | Receptor Activator of Nuclear Factor-kappa B - genetics | Female | Lung - metabolism | Mice | Receptor Activator of Nuclear Factor-kappa B - metabolism | Respiratory Mucosa - metabolism | Genetic aspects | Research | Risk factors | Cancer cells | Index Medicus | lung cancer | lung cancer stem-like cells | Research Paper | energy homeostasis | Medicin och hälsovetenskap
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7. Full Text A non-randomized dose-escalation Phase I trial of a protein-based immunotherapeutic for the treatment of breast cancer patients with HER2-overexpressing tumors
by Limentani, Steven A and Campone, Mario and Dorval, Thierry and Curigliano, Giuseppe and de Boer, Richard and Vogel, Charles and White, Shane and Bachelot, Thomas and Canon, Jean-Luc and Disis, Mary and Awada, Ahmad and Berlière, Martine and Amant, Frédéric and Levine, Ellis and Burny, Wivine and Callegaro, Andrea and de Sousa Alves, Pedro Miguel and Louahed, Jamila and Brichard, Vincent and Lehmann, Frédéric F
Breast cancer research and treatment, ISSN 0167-6806, 4/2016, Volume 156, Issue 2, pp. 319 - 330
Oncology | Cancer immunotherapeutic | Vaccine | dHER2 protein | Medicine & Public Health | HER2-overexpressing breast cancer | Life Sciences & Biomedicine | Science & Technology | Up-Regulation | Drug Administration Schedule | Humans | Middle Aged | Gene Expression Regulation, Neoplastic | Immunologic Factors - administration & dosage | Receptor, ErbB-2 - metabolism | Treatment Outcome | Recombinant Proteins - administration & dosage | Breast Neoplasms - metabolism | Breast Neoplasms - therapy | Dose-Response Relationship, Drug | Drug Dosage Calculations | Recombinant Proteins - immunology | Immunotherapy | Survival Analysis | Adult | Female | Aged | Immunologic Factors - adverse effects | Receptor, ErbB-2 - immunology | Viral antibodies | Cancer patients | Care and treatment | Clinical trials | Antibodies | Breast cancer | Drug therapy | Cancer | Index Medicus
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8. Full Text The Role of Containers in Reproducibility
by Canon, R. Shane
2020 2nd International Workshop on Containers and New Orchestration Paradigms for Isolated Environments in HPC (CANOPIE-HPC), 11/2020, pp. 19 - 25
Reproducibility | Containers | Tools | Metadata | Hardware | Libraries | HPC | Bioinformatics | Best practices
Conference Proceeding
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9. Full Text The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
by Seaver, Samuel M D and Liu, Filipe and Zhang, Qizhi and Jeffryes, James and Faria, José P and Edirisinghe, Janaka N and Mundy, Michael and Chia, Nicholas and Noor, Elad and Beber, Moritz E and Best, Aaron A and DeJongh, Matthew and Kimbrel, Jeffrey A and D'haeseleer, Patrik and McCorkle, Sean R and Bolton, Jay R and Pearson, Erik and Canon, Shane and Wood-Charlson, Elisha M and Cottingham, Robert W and Arkin, Adam P and Henry, Christopher S
Nucleic acids research, 01/2021, Volume 49, Issue D1, pp. D1555 - D1555
Index Medicus
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10. Full Text Performance Analysis of High Performance Computing Applications on the Amazon Web Services Cloud
by Jackson, K R and Ramakrishnan, L and Muriki, K and Canon, S and Cholia, S and Shalf, J and Wasserman, H J and Wright, N J
2010 IEEE Second International Conference on Cloud Computing Technology and Science, 11/2010, pp. 159 - 168
Cloud computing | Program processors | Computer aided manufacturing | Clouds | Communities | Bandwidth | MPI | Benchmark testing | HPC | Distributed Computing | Performance | Stress
Conference Proceeding
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11. Full Text I/O performance of virtualized cloud environments
by Ghoshal, Devarshi and Canon, Richard and Ramakrishnan, Lavanya
Proceedings of the second international workshop on data intensive computing in the clouds, 11/2011, pp. 71 - 80
cloud | I/O benchmarking | virtual environments | Virtual environments | Cloud
Conference Proceeding
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12. Shifter: Containers for HPC
by Gerhardt, Lisa and Bhimji, Wahid and Canon, Shane and Fasel, Markus and Jacobsen, Doug and Mustafa, Mustafa and Porter, Jeff and Tsulaia, Vakho
Journal of Physics: Conference Series, ISSN 1742-6588, 11/2017, Volume 898, Issue 8
Conference Proceeding
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