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1. Full Text Improved mosquito genome points to population-control strategies
by Celniker, Susan E
Nature, ISSN 0028-0836, 11/2018, Volume 563, Issue 7732, pp. 482 - 483
Genetics | Genomics | Mosquitoes | Usage | Genetic aspects | Vector control | Methods | Genes | Pesticides | Genetic research | Genomes
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2. Full Text A genomic approach to mosquito control
by Celniker, SE
NATURE, ISSN 0028-0836, 11/2018, Volume 563, Issue 7732, pp. 482 - 483
[...]mosquitoes quickly develop resistance to these chemicals2, and pesticides can accumulate in the food chain, with adverse effects on beneficial insects,... 
MULTIDISCIPLINARY SCIENCES | AEDES-AEGYPTI | Laboratories | Genes | Viral diseases | Insecticides | Viruses | Genomes | Mapping | Males | Aquatic insects | Tropical diseases | Disease resistance | Insecticide resistance | Food chains | Wildlife | Pesticide resistance | Insect control | Deltamethrin | Chromosomes | Vector-borne diseases | Dengue fever | Pesticides | Beneficial arthropods | Cell division | Vectors | Organic chemistry | Mosquitoes | Researchers | Insects | Gene duplication | Genetic engineering | Gene mapping
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3. Full Text Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation
by Westholm, Jakub O and Miura, Pedro and Olson, Sara and Shenker, Sol and Joseph, Brian and Sanfilippo, Piero and Celniker, Susan E and Graveley, Brenton R and Lai, Eric C and Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Cell Reports, ISSN 2211-1247, 12/2014, Volume 9, Issue 5, pp. 1966 - 1980
Circularization was recently recognized to broadly expand transcriptome complexity. Here, we exploit massive total RNA-sequencing data, >5 billion paired-end... 
WIDESPREAD | TRANSCRIPTS | ABUNDANT | GENE | BIOGENESIS | 3' UTRS | IDENTIFICATION | MOLECULES | CELL BIOLOGY | Central Nervous System - metabolism | Nerve Tissue - metabolism | Transcriptome | Male | Drosophila melanogaster - genetics | RNA - genetics | Drosophila melanogaster - metabolism | Animals | Sequence Analysis, RNA | Base Sequence | Female | Genome, Insect | RNA - metabolism | Index Medicus | BASIC BIOLOGICAL SCIENCES
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4. Full Text Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
by Sushmita Roy and Jason Ernst and Peter V. Kharchenko and Pouya Kheradpour and Nicolas Negre and Matthew L. Eaton and Jane M. Landolin and Christopher A. Bristow and Lijia Ma and Michael F. Lin and Stefan Washietl and Bradley I. Arshinoff and Ferhat Ay and Patrick E. Meyer and Nicolas Robine and Nicole L. Washington and Luisa Di Stefano and Eugene Berezikov and Christopher D. Brown and Rogerio Candeias and Joseph W. Carlson and Adrian Carr and Irwin Jungreis and Daniel Marbach and Rachel Sealfon and Michael Y. Tolstorukov and Sebastian Will and Artyom A. Alekseyenko and Carlo Artieri and Benjamin W. Booth and Angela N. Brooks and Qi Dai and Carrie A. Davis and Michael O. Duff and Xin Feng and Andrey A. Gorchakov and Tingting Gu and Jorja G. Henikoff and Philipp Kapranov and Renhua Li and Heather K. MacAlpine and John Malone and Aki Minoda and Jared Nordman and Katsutomo Okamura and Marc Perry and Sara K. Powell and Nicole C. Riddle and Akiko Sakai and Anastasia Samsonova and Jeremy E. Sandler and Yuri B. Schwartz and Noa Sher and Rebecca Spokony and David Sturgill and Marijke van Baren and Kenneth H. Wan and Li Yang and Charles Yu and Elise Feingold and Peter Good and Mark Guyer and Rebecca Lowdon and Kami Ahmad and Justen Andrews and Bonnie Berger and Steven E. Brenner and Michael R. Brent and Lucy Cherbas and Sarah C. R. Elgin and Thomas R. Gingeras and Robert Grossman and Roger A. Hoskins and Thomas C. Kaufman and William Kent and Mitzi I. Kuroda and Terry Orr-Weaver and Norbert Perrimon and Vincenzo Pirrotta and James W. Posakony and Bing Ren and Steven Russell and Peter Cherbas and Brenton R. Graveley and Suzanna Lewis and Gos Micklem and Brian Oliver and Peter J. Park and Susan E. Celniker and Steven Henikoff and Gary H. Karpen and Eric C. Lai and David M. MacAlpine and Lincoln D. Stein and Kevin P. White and Manolis Kellis and modENCODE Consortium and The modENCODE Consortium
Science, ISSN 0036-8075, 12/2010, Volume 330, Issue 6012, pp. 1787 - 1797
To gain insight into how genomic information is translated into cellular and developmental programs, the Drosophila model organism Encyclopedia of DNA Elements... 
Datasets | Chromatin | MicroRNA | RNA | RESEARCH ARTICLES | Genes | Drosophila | Genomics | Histones | Nucleosomes | Genomes | TRANSCRIPTION FACTORS | SOMATIC-CELLS | DNA-BINDING | NETWORK | HUMAN GENOME | MULTIDISCIPLINARY SCIENCES | SEQUENCE | REGIONS | RNA PATHWAY | PREDICTIVE CHROMATIN SIGNATURES | MELANOGASTER | Chromatin - metabolism | Epigenesis, Genetic | Drosophila Proteins - metabolism | Gene Regulatory Networks | Drosophila melanogaster - genetics | Drosophila melanogaster - metabolism | RNA, Small Untranslated - genetics | Transcription, Genetic | Genome, Insect | Genomics - methods | Binding Sites | RNA, Small Untranslated - metabolism | Genes, Insect | Promoter Regions, Genetic | Computational Biology - methods | Molecular Sequence Annotation | Gene Expression Regulation | Nucleosomes - metabolism | Nucleosomes - genetics | Transcription Factors - metabolism | Animals | Drosophila melanogaster - growth & development | Drosophila Proteins - genetics | Histones - metabolism | Chromatin - genetics | Transcription factors | DNA binding proteins | Research | Gene expression | Index Medicus | Proteins | Networks | Cellular | Ribonucleic acids | Replication | Mathematical models
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5. Full Text Evolution of genes and genomes on the Drosophila phylogeny
by Clark, Andrew G and Eisen, Michael B and Smith, Douglas R and Bergman, Casey M and Oliver, Brian and Markow, Therese A and Kaufman, Thomas C and Kellis, Manolis and Gelbart, William and Iyer, Venky N and Pollard, Daniel A and Sackton, Timothy B and Larracuente, Amanda M and Singh, Nadia D and Abad, Jose P and Abt, Dawn N and Adryan, Boris and Aguade, Montserrat and Akashi, Hiroshi and Anderson, Wyatt W and Aquadro, Charles F and Ardell, David H and Arguello, Roman and Artieri, Carlo G and Barbash, Daniel A and Barker, Daniel and Barsanti, Paolo and Batterham, Phil and Batzoglou, Serafim and Begun, Dave and Bhutkar, Arjun and Blanco, Enrico and Bosak, Stephanie A and Bradley, Robert K and Brand, Adrianne D and Brent, Michael R and Brooks, Angela N and Brown, Randall H and Butlin, Roger K and Caggese, Corrado and Calvi, Brian R and Bernardo De Carvalho, A and Caspi, Anat and Castrezana, Sergio and Celniker, Susan E and Chang, Jean L and Chapple, Charles and Chatterji, Sourav and Chinwalla, Asif and Civetta, Alberto and Clifton, Sandra W and Comeron, Josep M and Costello, James C and Coyne, Jerry A and Daub, Jennifer and David, Robert G and Delcher, Arthur L and Delehaunty, Kim and Do, Chuong B and Ebling, Heather and Edwards, Kevin and Eickbush, Thomas and Evans, Jay D and Filipski, Alan and Findeiß, Sven and Freyhult, Eva and Fulton, Lucinda and Fulton, Robert and Garcia, Ana C. L and Gardiner, Anastasia and Garfield, David A and Garvin, Barry E and Gibson, Greg and Gilbert, Don and Gnerre, Sante and Godfrey, Jennifer and Good, Robert and Gotea, Valer and Gravely, Brenton and Greenberg, Anthony J and Griffiths-Jones, Sam and Gross, Samuel and Guigo, Roderic and Gustafson, Erik A and Haerty, Wilfried and Hahn, Matthew W and Halligan, Daniel L and Halpern, Aaron L and Halter, Gillian M and Han, Mira V and Heger, Andreas and Hillier, LaDeana and Hinrichs, Angie S and Holmes, Ian and Hoskins, Roger A and Hubisz, Melissa J and Hultmark, Dan and Huntley, Melanie A and Jaffe, David B and Jagadeeshan, Santosh and ... and Drosophila 12 Genomes Consor and Broad Inst Whole Genome Ass and Broad Inst Genome Sequencing and Drosophila 12 Genomes Consortium and Medicinska fakulteten and Umeå centrum för molekylär patogenes (UCMP) (Medicinska fakulteten) and Umeå universitet
Nature, ISSN 0028-0836, 11/2007, Volume 450, Issue 7167, pp. 203 - 218
Comparative analysis of multiple genomes in a phylogenetic framework dramatically improves the precision and sensitivity of evolutionary inference, producing... 
SYNONYMOUS CODON USAGE | ADAPTIVE PROTEIN EVOLUTION | NONCODING DNA | FRUIT-FLY | MULTIDISCIPLINARY SCIENCES | MOLECULAR EVOLUTION | NATURAL-SELECTION | HOST-DEFENSE | MITOCHONDRIAL-DNA | FAMILY EVOLUTION | AMINO-ACID SUBSTITUTION | Multigene Family - genetics | Synteny - genetics | Genes, Insect - genetics | Genomics | Genome, Insect - genetics | Genome, Mitochondrial - genetics | Reproduction - genetics | Drosophila - classification | Phylogeny | RNA, Untranslated - genetics | Sequence Analysis, DNA | Gene Order - genetics | Sequence Alignment | Animals | DNA Transposable Elements - genetics | Drosophila - immunology | Codon - genetics | Drosophila - metabolism | Drosophila Proteins - genetics | Immunity - genetics | Drosophila - genetics | Evolution, Molecular | Comparative studies | Evolution | Genetics | Insects | Genes | Index Medicus
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6. Full Text The developmental transcriptome of Drosophila melanogaster
by Graveley, Brenton R and Brooks, Angela N and Carlson, Joseph W and Duff, Michael O and Landolin, Jane M and Yang, Li and Artieri, Carlo G and Van Baren, Marijke J and Boley, Nathan and Booth, Benjamin W and Brown, James B and Cherbas, Lucy and Davis, Carrie A and Dobin, Alex and Li, Renhua and Lin, Wei and Malone, John H and Mattiuzzo, Nicolas R and Miller, David and Sturgill, David and Tuch, Brian B and Zaleski, Chris and Zhang, Dayu and Blanchette, Marco and Dudoit, Sandrine and Eads, Brian and Green, Richard E and Hammonds, Ann and Jiang, Lichun and Kapranov, Phil and Langton, Laura and Perrimon, Norbert and Sandler, Jeremy E and Wan, Kenneth H and Willingham, Aarron and Zhang, Yu and Zou, Yi and Andrews, Justen and Bickel, Peter J and Brenner, Steven E and Brent, Michael R and Cherbas, Peter and Gingeras, Thomas R and Hoskins, Roger A and Kaufman, Thomas C and Oliver, Brian and Celniker, Susan E
Nature, ISSN 0028-0836, 03/2011, Volume 471, Issue 7339, pp. 473 - 479
Drosophila melanogaster is one of the most well studied genetic model organisms; nonetheless, its genome still contains unannotated coding and non-coding... 
ABDOMINAL-B | SYSTEM | BITHORAX COMPLEX | FUNCTIONAL ELEMENTS | DOMAIN | COMPARATIVE GENOMICS | MULTIDISCIPLINARY SCIENCES | GENE-EXPRESSION | LARVAL DEVELOPMENT | TARGETS | IDENTIFICATION | Drosophila melanogaster - embryology | Genes, Insect - genetics | Oligonucleotide Array Sequence Analysis | RNA Editing - genetics | Gene Expression Regulation, Developmental - genetics | RNA, Messenger - analysis | Male | Gene Expression Profiling | Drosophila melanogaster - genetics | Base Sequence | RNA, Small Untranslated - genetics | Female | Alternative Splicing - genetics | RNA, Messenger - genetics | Genome, Insect - genetics | Exons - genetics | Sex Characteristics | Animals | RNA, Small Untranslated - analysis | Drosophila melanogaster - growth & development | MicroRNAs - genetics | Drosophila Proteins - genetics | Sequence Analysis | Transcription, Genetic - genetics | Protein Isoforms - genetics | Genetic aspects | Models | Genetic transcription | Research | Drosophila | Studies | Genes | Genetics | Genomes | Ribonucleic acid--RNA | Males | Embryos | Index Medicus
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7. Full Text Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes
by Celniker, Susan E and Markstein, Michele and Pitsouli, Chrysoula and Villalta, Christians and Perrimon, Norbert
Nature Genetics, ISSN 1061-4036, 04/2008, Volume 40, Issue 4, pp. 476 - 483
A major obstacle to creating precisely expressed transgenes lies in the epigenetic effects of the host chromatin that surrounds them. Here we present a... 
RNA INTERFERENCE | TRANSFORMATION | PHI-C31 INTEGRASE | PROTEIN | WHITE GENE | DROSOPHILA-MELANOGASTER | TRANSPOSABLE ELEMENT | GENETICS & HEREDITY | GENE-EXPRESSION | CHROMOSOMAL POSITION | REGULATORY ELEMENTS | Transgenes - physiology | Cytoskeletal Proteins - genetics | Receptors, Notch - metabolism | Molecular Sequence Data | Receptors, Notch - genetics | Drosophila Proteins - metabolism | Drosophila melanogaster - genetics | Drosophila melanogaster - metabolism | Tissue Distribution | Retroviridae - genetics | Recombination, Genetic | Chromatin - physiology | Cytoskeletal Proteins - metabolism | Female | Insulator Elements - genetics | Myogenic Regulatory Factors - genetics | Animals, Genetically Modified | Larva - metabolism | Gene Expression Regulation | Genome, Insect - genetics | Myogenic Regulatory Factors - metabolism | HSP70 Heat-Shock Proteins - genetics | Saccharomyces cerevisiae Proteins - genetics | Wings, Animal - physiology | HSP70 Heat-Shock Proteins - metabolism | Phenotype | Animals | Plasmids | Saccharomyces cerevisiae Proteins - metabolism | Drosophila melanogaster - growth & development | Drosophila Proteins - genetics | Attachment Sites, Microbiological - genetics | Physiological aspects | Epigenetic inheritance | Genetic aspects | Retroviruses | Research | Gene expression | Chromatin | Insects | Transgenic animals | Genomics | Research methodology | Index Medicus
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8. Full Text Unlocking the secrets of the genome
by Henikoff, Steven and MacAlpine, David M and Stein, Lincoln and Snyder, Michael and Lieb, Jason D and Celniker, Susan E and Dillon, Laura A. L and White, Kevin P and Waterston, Robert H and Micklem, Gos and Lai, Eric C and Karpen, Gary H and Gerstein, Mark B and Gunsalus, Kristin C and Piano, Fabio and Kellis, Manolis and modENCODE Consortium
Nature, ISSN 0028-0836, 06/2009, Volume 459, Issue 7249, pp. 927 - 930
Charting the chromatin 'landscapes' will include the characterization of key histone modifications and variants, nucleosome phasing, RNA polymerase II isoforms... 
FUNCTIONAL ELEMENTS | PROJECT | CAENORHABDITIS-ELEGANS | DROSOPHILA-MELANOGASTER | MULTIDISCIPLINARY SCIENCES | GENE-EXPRESSION MAP | RNAI LIBRARY | C-ELEGANS | NETWORKS | IDENTIFICATION | DISCOVERY | Animals | Caenorhabditis elegans - genetics | Humans | Genome - genetics | Genomics - methods | Drosophila melanogaster - genetics | Genomics - trends | Human Genome Project | Studies | Proteins | Medical research | E coli | Genomics | Apoptosis | Index Medicus
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9. Full Text Diversity and dynamics of the Drosophila transcriptome
by Brown, James B and Boley, Nathan and Eisman, Robert and May, Gemma E and Stoiber, Marcus H and Duff, Michael O and Booth, Ben W and Wen, Jiayu and Park, Soo and Suzuki, Ana Maria and Wan, Kenneth H and Yu, Charles and Zhang, Dayu and Carlson, Joseph W and Cherbas, Lucy and Eads, Brian D and Miller, David and Mockaitis, Keithanne and Roberts, Johnny and Davis, Carrie A and Frise, Erwin and Hammonds, Ann S and Olson, Sara and Shenker, Sol and Sturgill, David and Samsonova, Anastasia A and Weiszmann, Richard and Robinson, Garret and Hernandez, Juan and Andrews, Justen and Bickel, Peter J and Carninci, Piero and Cherbas, Peter and Gingeras, Thomas R and Hoskins, Roger A and Kaufman, Thomas C and Lai, Eric C and Oliver, Brian and Perrimon, Norbert and Graveley, Brenton R and Celniker, Susan E
Nature, ISSN 0028-0836, 08/2014, Volume 512, Issue 7515, pp. 393 - 399
Animal transcriptomes are dynamic with each cell type, tissue and organ system expressing an ensemble of transcript forms that give rise to substantial... 
ENDOGENOUS SIRNAS | COMPLEX | EXPRESSION ANALYSIS | LONG NONCODING RNAS | LANDSCAPE | MELANOGASTER GENOME | MULTIDISCIPLINARY SCIENCES | CAP-ANALYSIS | GENOME-WIDE ANALYSIS | GENE-EXPRESSION | IDENTIFICATION | Nerve Tissue - metabolism | Stress, Physiological - genetics | Alternative Splicing - genetics | Molecular Sequence Annotation | RNA, Messenger - genetics | Drosophila melanogaster - cytology | Male | Gene Expression Profiling | RNA, Long Noncoding - genetics | Transcriptome - genetics | Poly A - genetics | Sex Characteristics | Organ Specificity | RNA, Messenger - metabolism | Drosophila melanogaster - genetics | Promoter Regions, Genetic - genetics | Animals | Polyadenylation | Female | Drosophila melanogaster - anatomy & histology | Genetic research | Genetic aspects | Research | Genetic transcription | RNA | Drosophila | Proteins | Genomes | Insects | Genes | Genomics | Methods | Index Medicus
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