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1. Full Text Antigen-capturing nanoparticles improve the abscopal effect and cancer immunotherapy
by Min, Yuanzeng and Roche, Kyle C and Tian, Shaomin and Eblan, Michael J and McKinnon, Karen P and Caster, Joseph M and Chai, Shengjie and Herring, Laura E and Zhang, Longzhen and Zhang, Tian and Desimone, Joseph M and Tepper, Joel E and Vincent, Benjamin G and Serody, Jonathan S and Wang, Andrew Z
Nature nanotechnology, ISSN 1748-3387, 09/2017, Volume 12, Issue 9, pp. 877 - 882
Science & Technology - Other Topics | Materials Science | Nanoscience & Nanotechnology | Technology | Materials Science, Multidisciplinary | Science & Technology | T-Lymphocytes, Cytotoxic - immunology | Immunotherapy - methods | Antigens, Neoplasm - immunology | Melanoma, Experimental - therapy | Mice, Inbred C57BL | Programmed Cell Death 1 Receptor - antagonists & inhibitors | CD4-CD8 Ratio | Neoplasms - therapy | Animals | Melanoma, Experimental - immunology | Nanoparticles - therapeutic use | Neoplasms - immunology | Nanomedicine - methods | Cell Line, Tumor | Female | Programmed Cell Death 1 Receptor - immunology | Formulations | Antigens | Immune response | Immunoregulation | CD8 antigen | Melanoma | Cytotoxicity | Lymphocytes T | T cell receptors | Radiation therapy | CD4 antigen | Nanoparticles | Proteins | Lymphocytes | Cell death | Antigen-presenting cells | Immunotherapy | Surface properties | Nanotechnology | Cancer | Tumors | Apoptosis | Index Medicus
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2. Full Text Alternative tumour-specific antigens
by Smith, Christof C and Selitsky, Sara R and Chai, Shengjie and Armistead, Paul M and Vincent, Benjamin G and Serody, Jonathan S
Nature reviews. Cancer, ISSN 1474-175X, 08/2019, Volume 19, Issue 8, pp. 465 - 478
Life Sciences & Biomedicine | Oncology | Science & Technology | Antigens, Neoplasm - genetics | Frameshift Mutation | Alternative Splicing | Genomics | Humans | Computational Biology | Gene Fusion | INDEL Mutation | Animals | Neoplasms - genetics | Neoplasms - immunology | Mice | Mutation | Antigens | Alternative splicing | Software | Nucleotides | Computer applications | Tumors | Index Medicus
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3. Full Text Molecular subtype-specific immunocompetent models of high-grade urothelial carcinoma reveal differential neoantigen expression and response to immunotherapy
by Saito, Ryoichi and Smith, Christof C and Utsumi, Takanobu and Bixby, Lisa M and Kardos, Jordan and Wobker, Sara E and Stewart, Kyle G and Chai, Shengjie and Manocha, Ujjawal and Byrd, Kevin M and Damrauer, Jeffrey S and Williams, Scott E and Vincent, Benjamin G and Kim, William Y
Cancer research (Chicago, Ill.), ISSN 0008-5472, 07/2018, Volume 78, Issue 14, pp. 3954 - 3968
Life Sciences & Biomedicine | Oncology | Science & Technology | Urothelial cancer | Animal models | Immunological memory | Memory cells | PD-1 protein | Immunoregulation | CD8 antigen | Bladder | Lymphocytes T | Biology | Bladder cancer | Molecular chains | CD4 antigen | Molecular modelling | Immunogenicity | Lymphocytes | Immunotherapy | Rodents | Urothelial carcinoma | Cancer | Tumors | Index Medicus
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4. Full Text Integrated Molecular Characterization of Testicular Germ Cell Tumors
by Shen, Hui and Shih, Juliann and Hollern, Daniel P and Wang, Linghua and Bowlby, Reanne and Tickoo, Satish K and Thorsson, Vésteinn and Mungall, Andrew J and Newton, Yulia and Hegde, Apurva M and Armenia, Joshua and Sánchez-Vega, Francisco and Pluta, John and Pyle, Louise C and Mehra, Rohit and Reuter, Victor E and Godoy, Guilherme and Jones, Jeffrey and Shelley, Carl S and Feldman, Darren R and Vidal, Daniel O and Lessel, Davor and Kulis, Tomislav and Cárcano, Flavio M and Leraas, Kristen M and Lichtenberg, Tara M and Brooks, Denise and Cherniack, Andrew D and Cho, Juok and Heiman, David I and Kasaian, Katayoon and Liu, Minwei and Noble, Michael S and Xi, Liu and Zhang, Hailei and Zhou, Wanding and ZenKlusen, Jean C and Hutter, Carolyn M and Felau, Ina and Zhang, Jiashan and Schultz, Nikolaus and Getz, Gad and Meyerson, Matthew and Stuart, Joshua M and Wang, Linghua and Xi, Liu and Wheeler, David and Hughes, Daniel and Covington, Kyle and Jayaseelan, Joy C and Korchina, Viktoriya and Lewis, Lora and Hu, Jianhong and Doddapaneni, HarshaVardhan and Muzny, Donna and Gibbs, Richard and Hoadley, Katherine A and Hollern, Daniel and Vincent, Benjamin G and Chai, Shengjie and Smith, Christof C and Auman, J. Todd and Shi, Yan and Meng, Shaowu and Skelly, Tara and Tan, Donghui and Veluvolu, Umadevi and Mieczkowski, Piotr A and Jones, Corbin D and Wilkerson, Matthew D and Balu, Saianand and Bodenheimer, Tom and Hoyle, Alan P and Jefferys, Stuart R and Mose, Lisle E and Simons, Janae V and Soloway, Matthew G and Roach, Jeffrey and Parker, Joel S and Hayes, D. Neil and Perou, Charles M and Shih, Juliann and Cherniack, Andrew D and Meyerson, Matthew and Saksena, Gordon and Cibulskis, Carrie and Schumacher, Steven E and Beroukhim, Rameen and Gabriel, Stacey B and Bowlby, Reanne and Mungall, Andrew J and Brooks, Denise and Kasaian, Katayoon and Ally, Adrian and Balasundaram, Miruna and Carlsen, Rebecca and Cheung, Dorothy and Chuah, Eric and Dhalla, Noreen and Holt, Robert A and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network
Cell reports (Cambridge), ISSN 2211-1247, 06/2018, Volume 23, Issue 11, pp. 3392 - 3406
exome sequencing | miR-375 | KIT | DNA methylation | seminoma | nonseminoma | copy number | testicular germ cell tumors | The Cancer Genome Atlas | Life Sciences & Biomedicine | Science & Technology | Cell Biology | ras Proteins - genetics | Humans | Gene Expression Regulation, Neoplastic | Testicular Neoplasms - metabolism | ras Proteins - metabolism | Male | MicroRNAs - metabolism | Neoplasms, Germ Cell and Embryonal - metabolism | Proto-Oncogene Proteins c-kit - metabolism | Testicular Neoplasms - pathology | DNA Copy Number Variations | Seminoma - metabolism | DNA Methylation | Neoplasms, Germ Cell and Embryonal - classification | Proto-Oncogene Proteins c-kit - genetics | Neoplasms, Germ Cell and Embryonal - pathology | Seminoma - pathology | Testicular Neoplasms - classification | Index Medicus
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5. Full Text Systematic Analysis of Splice-Site-Creating Mutations in Cancer
by Cao, Song and Gao, Qingsong and Wendl, Michael C and Vo, Nam Sy and Zhao, Yanyan and Climente-González, Héctor and Huang, Mo and Liang, Wen-Wei and Wyczalkowski, Matthew A and Li, Zhi and Fenyö, David and Walter, Matthew J and Caesar-Johnson, Samantha J and Demchok, John A and Felau, Ina and Kasapi, Melpomeni and Ferguson, Martin L and Hutter, Carolyn M and Sofia, Heidi J and Yang, Liming and Zenklusen, Jean C and Zhang, Jiashan (Julia) and Chudamani, Sudha and Lolla, Laxmi and Pihl, Todd and Sun, Qiang and Wan, Yunhu and Wu, Ye and Gehlenborg, Nils and Heiman, David I and Kim, Jaegil and Lin, Pei and Meier, Sam and Zhang, Hailei and Bernard, Brady and Chambwe, Nyasha and Kramer, Roger and Leinonen, Kalle and Liu, Yuexin and Miller, Michael and Shmulevich, Ilya and Thorsson, Vesteinn and Zhang, Wei and Akbani, Rehan and Hegde, Apurva M and Ju, Zhenlin and Kanchi, Rupa S and Li, Jun and Ling, Shiyun and Liu, Wenbin and Mills, Gordon B and Rao, Arvind and Ryan, Michael and Wang, Jing and Zhang, Jiexin and Chatila, Walid K and Heins, Zachary J and Kundra, Ritika and La, Konnor and Luna, Augustin and Phillips, Sarah M and Reznik, Ed and Sander, Chris and Sheridan, Robert and Sumer, S. Onur and Sun, Yichao and Wang, Jioajiao and Zhang, Hongxin and Anur, Pavana and Peto, Myron and Spellman, Paul and Benz, Christopher and Stuart, Joshua M and Wong, Christopher K and Yau, Christina and Hayes, D. Neil and Parker, Joel S and Wilkerson, Matthew D and Balasundaram, Miruna and Bowlby, Reanne and Brooks, Denise and Carlsen, Rebecca and Dhalla, Noreen and Holt, Robert and Jones, Steven J.M and Kasaian, Katayoon and Ma, Yussanne and Marra, Marco A and Mayo, Michael and Moore, Richard A and Mungall, Andrew J and Robertson, A. Gordon and Sadeghi, Sara and Sipahimalani, Payal and Tam, Angela and Tse, Kane and Wong, Tina and Berger, Ashton C and Cibulskis, Carrie and Gabriel, Stacey B and ... and The Cancer Genome Atlas Research Network and Canc Genome Atlas Res Network and Cancer Genome Atlas Research Network and Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Cell reports (Cambridge), ISSN 2211-1247, 04/2018, Volume 23, Issue 1, pp. 270 - 281.e3
RNA | mutations of clinical relevance | splicing | Biochemistry, Genetics and Molecular Biology(all) | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Index Medicus | Splicing | Mutations of clinical relevance | BASIC BIOLOGICAL SCIENCES
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6. Full Text Prognostic value of B cells in cutaneous melanoma
by Selitsky, Sara R and Mose, Lisle E and Smith, Christof C and Chai, Shengjie and Hoadley, Katherine A and Dittmer, Dirk P and Moschos, Stergios J and Parker, Joel S and Vincent, Benjamin G
Genome medicine, ISSN 1756-994X, 05/2019, Volume 11, Issue 1, pp. 36 - 36
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Skin Neoplasms - pathology | B-Lymphocytes - immunology | Biomarkers, Tumor - standards | Skin Neoplasms - immunology | Melanoma - immunology | Humans | Melanoma - pathology | Biomarkers, Tumor - immunology | Lymphocytes, Tumor-Infiltrating - immunology | RNA sequencing | Usage | Immune response | Prognosis | Development and progression | B cells | Research | Cancer | PD-1 protein | Cytotoxicity | Systematic review | Genomes | Lymphocytes T | Metastasis | B-cell receptor | Cell density | Metastases | CTLA-4 protein | Lymphocytes | Immunotherapy | Classification | Antigens | Phenotypes | Cloning | Melanoma | T cell receptors | Ribonucleic acid--RNA | Gene expression | Patients | Multiculturalism & pluralism | Learning algorithms | Lymphocytes B | Medical prognosis | Skin | Mutation | Index Medicus | Immunology | Machine learning
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7. Full Text Alkali Metal Cationization of Tumor-associated Antigen Peptides for Improved Dissociation and Measurement by Differential Ion Mobility-Mass Spectrometry
by Keating, James E and Chung, Chris and Chai, Shengjie and Prins, Jans F and Vincent, Benjamin G and Hunsucker, Sally A and Armistead, Paul M and Glish, Gary L
Journal of proteome research, ISSN 1535-3893, 08/2020, Volume 19, Issue 8, pp. 3176 - 3183
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biochemical Research Methods | Science & Technology | Index Medicus
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