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1. Full Text Erratum to: Detection and validation of structural variations in bovine whole-genome sequence data
by Chen, Long and Chamberlain, Amanda J and Reich, Coralie M and Daetwyler, Hans D and Hayes, Ben J
Genetics, selection, evolution : GSE, ISSN 1297-9686, 03/2017, Volume 49, Issue 1, pp. 31 - 31
  After publication of this work [1], we noted that Acknowledgement section was incomplete and should be as follows: Acknowledgements The authors are very... 
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2. Full Text Genetic architecture of complex traits and accuracy of genomic Prediction: Coat colour, Milk-fat percentage, and type in holstein cattle as contrasting model traits
by Hayes, Ben J and Pryce, Jennie and Chamberlain, Amanda J and Bowman, Phil J and Goddard, Mike E
PLoS Genetics, ISSN 1553-7390, 09/2010, Volume 6, Issue 9, pp. e1001139 - e1001139
Prediction of genetic merit using dense SNP genotypes can be used for estimation of breeding values for selection of livestock, crops, and forage species; for... 
DNA-BINDING | KIT GENE | DISEASE | GENETICS & HEREDITY | BREEDING VALUES | RISK | HORSES | WIDE ASSOCIATION | SELECTION | DAIRY-CATTLE | Milk - chemistry | Genome-Wide Association Study | Reproducibility of Results | Quantitative Trait, Heritable | Breeding | Chromosomes, Mammalian - genetics | Genome - genetics | Male | Cattle - genetics | Skin Pigmentation - genetics | Lipids - chemistry | Phenotype | Animals | Polymorphism, Single Nucleotide - genetics | Genomics - methods | Quantitative Trait Loci - genetics | Quantitative genetics | Livestock | Genetic aspects | Research | Single nucleotide polymorphisms | Index Medicus | Statistical analysis | Architecture | Statistical methods | Genomes | Experiments | Studies | Accuracy | Cattle | Forensic sciences | Genetics | Population | Crop diseases | Milk
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3. Full Text Accuracy of imputation to whole-genome sequence in sheep 06 Biological Sciences 0604 Genetics
by Bolormaa, Sunduimijid and Chamberlain, Amanda J and Khansefid, Majid and Stothard, Paul and Swan, Andrew A and Mason, Brett and Prowse-Wilkins, Claire P and Duijvesteijn, Naomi and Moghaddar, Nasir and Van Der Werf, Julius H and Daetwyler, Hans D and MacLeod, Iona M
Genetics Selection Evolution, ISSN 0999-193X, 01/2019, Volume 51, Issue 1
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4. Full Text Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle
by Daetwyler, H.D and Capitan, A and Pausch, H and Stothard, P and Binsbergen, van, R and Brondum, R.F and Liao, X and Djari, A and Roiguez, S.C and Grohs, C and Esquerré, D and Bouchez, O and Rossignol, M.N and Klopp, C and Rocha, D and Fritz, S and Eggen, A and Bowman, P.J and Coote, D and Chamberlain, A.J and Anderson, C.L and Tassel, C.P and Hulsegge, B and Goddard, M.E and Guldbrandsten, B and Lund, M.S and Veerkamp, R.F and Boichard, D.A and Fries, R and Hayes, B.J
Nature Genetics, ISSN 1061-4036, 2014, Volume 46, Issue 8, pp. 858 - 865
The 1000 bull genomes project supports the goal of accelerating the rates of genetic gain in domestic cattle while at the same time considering animal health... 
BOOPHILUS-MICROPLUS RESISTANCE | SUBSTITUTION | MILK-YIELD | GENE | GENOTYPE IMPUTATION | GENETICS & HEREDITY | CONDENSIN | MUTATIONS | POLYMORPHISM | IDENTIFICATION | HYPOCHONDROGENESIS | Sequence Homology, Amino Acid | Amino Acid Sequence | Animals | Molecular Sequence Data | Genotype | Male | Polymorphism, Single Nucleotide | Genome | Genome-Wide Association Study - methods | Cattle - genetics | Genetic aspects | Research | Nucleotide sequencing | Cattle | Methods | DNA sequencing | Studies | Genomics | Population | Genomes | Genetic diversity | Mutation | Breeding of animals | Chromosomes | Data bases | Milk | Index Medicus | Life Sciences | boophilus-microplus resistance | holstein calves | condensin | mutations | gene | genotype imputation | bos-taurus | dairy-cattle | mitotic chromosomes | milk-yield
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5. Full Text What is ‘neuromarketing’? A discussion and agenda for future research
by Lee, Nick and Broderick, Amanda J and Chamberlain, Laura
International Journal of Psychophysiology, ISSN 0167-8760, 2007, Volume 63, Issue 2, pp. 199 - 204
Recent years have seen advances in neuroimaging to such an extent that neuroscientists are able to directly study the frequency, location, and timing of... 
Neuroimaging | Neuroscience | Neuroeconomics | Neuromarketing | Marketing | PHYSIOLOGY | neuroscience | neuroeconomics | NEURAL BASIS | COOPERATION | NEUROSCIENCES | PSYCHOLOGY, EXPERIMENTAL | PSYCHOLOGY | neuroimaging | marketing | GAME | SYSTEMS | PSYCHOLOGY, BIOLOGICAL | EXCHANGE | neuromarketing | BRAIN | TRUST
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6. Full Text Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals
by Bouwman, Aniek C and Daetwyler, Hans D and Chamberlain, Amanda J and Ponce, Carla Hurtado and Sargolzaei, Mehdi and Schenkel, Flavio S and Sahana, Goutam and Govignon-Gion, Armelle and Boitard, Simon and Dolezal, Marlies and Pausch, Hubert and Brøndum, Rasmus F and Bowman, Phil J and Thomsen, Bo and Guldbrandtsen, Bernt and Lund, Mogens S and Servin, Bertrand and Garrick, Dorian J and Reecy, James and Vilkki, Johanna and Bagnato, Alessandro and Wang, Min and Hoff, Jesse L and Schnabel, Robert D and Taylor, Jeremy F and Vinkhuyzen, Anna A. E and Panitz, Frank and Bendixen, Christian and Holm, Lars-Erik and Gredler, Birgit and Hozé, Chris and Boussaha, Mekki and Sanchez, Marie-Pierre and Rocha, Dominique and Capitan, Aurelien and Tribout, Thierry and Barbat, Anne and Croiseau, Pascal and Drögemüller, Cord and Jagannathan, Vidhya and Vander Jagt, Christy and Crowley, John J and Bieber, Anna and Purfield, Deirdre C and Berry, Donagh P and Emmerling, Reiner and Götz, Kay-Uwe and Frischknecht, Mirjam and Russ, Ingolf and Sölkner, Johann and Van Tassell, Curtis P and Fries, Ruedi and Stothard, Paul and Veerkamp, Roel F and Boichard, Didier and Goddard, Mike E and Hayes, Ben J
Nature Genetics, ISSN 1061-4036, 03/2018, Volume 50, Issue 3, pp. 362 - 367
Stature is affected by many polymorphisms of small effect in humans(1). In contrast, variation in dogs, even within breeds, has been suggested to be largely... 
ANGUS | CONDITION SCORE | HUMAN HEIGHT | MILK-YIELD | PLAG1 | HEREFORD | GENETICS & HEREDITY | MISSENSE MUTATION | SELECTION | WEIGHT | DAIRY-CATTLE | Mammals - genetics | Humans | Genetic Association Studies - veterinary | Genome-Wide Association Study - statistics & numerical data | Body Height - genetics | Cattle - genetics | Genome-Wide Association Study - veterinary | Genetic Variation | Phenotype | Animals | Cattle - classification | Conserved Sequence | Body Size - genetics | Polymorphism, Single Nucleotide | Quantitative Trait Loci - genetics | Genome-wide association studies | Usage | Genetic variation | Beef cattle | Genetic aspects | Research | Genetic polymorphisms | Hypothesis testing | Nucleotide sequence | Architecture | Genes | Phenotypic variations | Genomes | Mammals | Meta-analysis | Quantitative trait loci | Proteins | Genotype & phenotype | Cattle | Body size | Dogs | Population | Mutation | Gene mapping | Milk | Index Medicus | LR - Genomica | Fokkerij & Genomica | Animal Breeding & Genomics | Fokkerij en Genetica | Animal Breeding and Genetics | LR - Animal Breeding & Genomics
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7. Full Text Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle
by Park, Stephen D.E and Magee, David A and McGettigan, Paul A and Teasdale, Matthew D and Edwards, Ceiridwen J and Lohan, Amanda J and Murphy, Alison and Braud, Martin and Donoghue, Mark T and Liu, Yuan and Chamberlain, Andrew T and Rue-Albrecht, Kévin and Schroeder, Steven and Spillane, Charles and Tai, Shuaishuai and Bradley, Daniel G and Sonstegard, Tad S and Loftus, Brendan J and MacHugh, David E
Genome Biology, ISSN 1474-7596, 2015, Volume 16, Issue 1, pp. 234 - 234
Background: Domestication of the now-extinct wild aurochs, Bos primigenius, gave rise to the two major domestic extant cattle taxa, B. taurus and B. indicus.... 
Ancient DNA | Bos primigenius | Cattle | Domestication | Evolution | Aurochs | Hybridization | Genome | MILK-YIELD | MITOCHONDRIAL GENOME | NEANDERTHAL GENOME | DOMESTIC CATTLE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | EUROPEAN AUROCHS | GENETICS & HEREDITY | POPULATION-STRUCTURE | TAURINE CATTLE | GENETIC-EVIDENCE | DAIRY-CATTLE | Genetic Variation | Animals | Ruminants - classification | Europe | Genomics | Phylogeography | England | Extinction, Biological | Ruminants - genetics | Sequence Analysis, DNA | Cattle - genetics | Evolution, Molecular | Extinct species | Nucleotide sequence | Extinction | Positive selection | Evolutionary genetics | Genomes | Mitochondrial DNA | Animal populations | Single-nucleotide polymorphism | Phylogeny | Metabolism | Genetic variance | Gene flow | MicroRNAs | Gene loci | Bioinformatics | Chromosomes | Deoxyribonucleic acid--DNA | Polymorphism | Index Medicus | Research
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8. Full Text Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits
by Wang, Min and Hancock, Timothy P and Chamberlain, Amanda J and Vander Jagt, Christy J and Pryce, Jennie E and Cocks, Benjamin G and Goddard, Mike E and Hayes, Benjamin J
BMC Genomics, ISSN 1471-2164, 05/2018, Volume 19, Issue 1, pp. 395 - 395
Background: Topological association domains (TADs) are chromosomal domains characterised by frequent internal DNA-DNA interactions. The transcription factor... 
Allelic-specific expression | Allele-specific expression quantitative trail loci | Cattle | Topological association domains | Functional annotation | Expression quantitative trail loci | CTCF binding motifs | ALLELE-SPECIFIC EXPRESSION | TRANSCRIPTION | MECHANISMS | ORGANIZATION | INSULATORS | 3D GENOME | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | HI-C | GENETICS & HEREDITY | GENE-EXPRESSION | ARCHITECTURE | REVEALS | Animals | Nucleotide Motifs | Genomics | CCCTC-Binding Factor - metabolism | Protein Binding | Quantitative Trait Loci - genetics | Transcription factors | Helix-loop-helix motif | Physiological aspects | Genetic aspects | Research | Gene expression | Properties | Genes | Synteny | Genomes | Proteins | Conserved sequence | Annotations | DNA methylation | Trends | Bioinformatics | Chromosomes | Deoxyribonucleic acid--DNA | Transfer RNA | Binding | Nucleotide sequence | Statistical tests | Variance analysis | Quantitative trait loci | Ribonucleic acids | Searching | Alleles | Software | Mutation | Variation | Index Medicus
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9. Full Text Extensive variation between tissues in allele specific expression in an outbred mammal
by Chamberlain, Amanda J and Vander Jagt, Christy J and Hayes, Benjamin J and Khansefid, Majid and Marett, Leah C and Millen, Catriona A and Nguyen, Thuy T.T and Goddard, Michael E
BMC Genomics, ISSN 1471-2164, 11/2015, Volume 16, Issue 1, pp. 993 - 993
Background: Allele specific gene expression (ASE), with the paternal allele more expressed than the maternal allele or vice versa, appears to be a common... 
RNA sequencing | Allele specific expression | Bovine | Cattle | Transcriptomics | Regulation | Differential expression | Gene expression | Tissue specific expression | CELLS | MOUSE | LOCI | BREAST-CANCER | MONOALLELIC EXPRESSION | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | GENE-EXPRESSION | MILK | Genomic Imprinting | Gene Expression | Animals, Outbred Strains - genetics | Gene Expression Profiling - methods | Male | Chromosome Mapping | Organ Specificity | Sequence Analysis, RNA - methods | Animals | Alleles | Female | Lung - metabolism | Polymorphism, Single Nucleotide | Thymus Gland - metabolism | Beef cattle | Genetic aspects | Research | Analysis | Index Medicus
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10. Full Text Survey of allele specific expression in bovine muscle
by Guillocheau, Gabriel M and El Hou, Abdelmajid and Meersseman, Cédric and Esquerré, Diane and Rebours, Emmanuelle and Letaief, Rabia and Simao, Morgane and Hypolite, Nicolas and Bourneuf, Emmanuelle and Bruneau, Nicolas and Vaiman, Anne and Vander Jagt, Christy J and Chamberlain, Amanda J and Rocha, Dominique
Scientific Reports, ISSN 2045-2322, 12/2019, Volume 9, Issue 1, pp. 4297 - 11
Allelic imbalance is a common phenomenon in mammals that plays an important role in gene regulation. An Allele Specific Expression (ASE) approach can be used... 
POLYMORPHISMS | GENE | TRANSCRIPTOME | RNA-SEQ | MULTIDISCIPLINARY SCIENCES | ALDEHYDE OXIDASE | DIFFERENTIATION | BINDING-SITES | IDENTIFICATION | MICRORNA EXPRESSION | DEFICIENCY | Transcription factors | Molecular modelling | Gene regulation | MiRNA | Alleles | Single-nucleotide polymorphism | Genomes | Gene expression | Binding sites | Meat
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11. Full Text Genetic Architecture of Complex Traits and Accuracy of Genomic Prediction: Coat Colour, Milk-Fat Percentage, and Type in Holstein Cattle as Contrasting Model Traits
: e1001139
by Ben J Hayes and Jennie Pryce and Amanda J Chamberlain and Phil J Bowman and Mike E Goddard
PLoS Genetics, ISSN 1553-7390, 09/2010, Volume 6, Issue 9
  Prediction of genetic merit using dense SNP genotypes can be used for estimation of breeding values for selection of livestock, crops, and forage species;... 
Statistical analysis | Architecture | Statistical methods | Genomes | Experiments | Studies | Accuracy | Cattle | Forensic sciences | Genetics | Population | Livestock | Crop diseases | Milk
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12. Full Text Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle
by Khansefid, Majid and Pryce, Jennie E and Bolormaa, Sunduimijid and Chen, Yizhou and Millen, Catriona A and Chamberlain, Amanda J and Vander Jagt, Christy J and Goddard, Michael E
BMC Genomics, ISSN 1471-2164, 11/2018, Volume 19, Issue 1, pp. 793 - 793
Background: The mutations changing the expression level of a gene, or expression quantitative trait loci (eQTL), can be identified by testing the association... 
RNA-sequencing | Allele specific expression | ASE analysis | Genome-wide association study | eQTL mapping | Genetic variation of complex traits | TRANSCRIPTOME | ANGUS CATTLE | REGULATORY VARIATION | BEEF-CATTLE | GENOMIC BREEDING VALUES | RNA-SEQ | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | RESIDUAL FEED-INTAKE | GENETICS & HEREDITY | QUALITY TRAITS | MU-CALPAIN | CALPASTATIN | Gene Expression | Genome-Wide Association Study | Reproducibility of Results | Quantitative Trait, Heritable | Chromosome Mapping | Multifactorial Inheritance | Genetic Variation | Animals | Sequence Analysis, RNA | Cattle | Alleles | Polymorphism, Single Nucleotide | Quantitative Trait Loci | Quantitative trait loci | Genetic aspects | Research | Gene expression | Genes | Genomics | Genomes | Single-nucleotide polymorphism | Tissues | Ribonucleic acid--RNA | Loci | Gene sequencing | Genetic variance | Mutation | Feeds | Gene mapping | Variation | Bioinformatics | Chromosomes | Polymorphism | Index Medicus
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13. Full Text Disrupted neuronal maturation in Angelman syndrome-derived induced pluripotent stem cells
by Fink, James J and Robinson, Tiwanna M and Germain, Noelle D and Sirois, Carissa L and Bolduc, Kaitlyn A and Ward, Amanda J and Rigo, Frank and Chamberlain, Stormy J and Levine, Eric S
Nature Communications, ISSN 2041-1723, 2017, Volume 8, Issue 1, pp. 15038 - 15038
Angelman syndrome (AS) is a neurogenetic disorder caused by deletion of the maternally inherited UBE3A allele and is characterized by developmental delay,... 
RETT-SYNDROME | UBIQUITIN LIGASE | MULTIDISCIPLINARY SCIENCES | MOUSE MODEL | ADULT HUMAN FIBROBLASTS | UBE3A | LONG-TERM POTENTIATION | DOPAMINERGIC-NEURONS | DEFICITS | EXPRESSION | PLASTICITY | Membrane Potentials - genetics | Action Potentials - genetics | Synaptic Transmission - physiology | Induced Pluripotent Stem Cells - physiology | Synaptic Transmission - genetics | Humans | Cells, Cultured | Ubiquitin-Protein Ligases - metabolism | Male | Gene Knockout Techniques | Membrane Potentials - physiology | Action Potentials - physiology | Angelman Syndrome - pathology | Neuronal Plasticity - genetics | Neuronal Plasticity - physiology | Neurons - physiology | Angelman Syndrome - genetics | Angelman Syndrome - metabolism | Female | Cell Differentiation | Neurons - metabolism | Ubiquitin-Protein Ligases - genetics | Induced Pluripotent Stem Cells - metabolism | Index Medicus
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