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1. Full Text Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation
by Conte, Mattia and Fiorillo, Luca and Bianco, Simona and Chiariello, Andrea M and Esposito, Andrea and Nicodemi, Mario
Nature communications, ISSN 2041-1723, 07/2020, Volume 11, Issue 1, pp. 3289 - 3289
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Cohesion | Chromatin | Architecture | Globules | Loci | Physics | Thermodynamics | Molecular modelling | Depletion | Polymer physics | Phase separation | Stochasticity | Cohesin | Polymers | Chromosomes | Folding | Combinatorial analysis | Deoxyribonucleic acid--DNA | Index Medicus
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2. Full Text Polymer physics of chromosome large-scale 3D organisation
by Chiariello, Andrea M and Annunziatella, Carlo and Bianco, Simona and Esposito, Andrea and Nicodemi, Mario
Scientific reports, ISSN 2045-2322, 07/2016, Volume 6, Issue 1, pp. 29775 - 29775
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Chromosomes, Human - chemistry | SOX9 Transcription Factor - metabolism | Chromatin - metabolism | Thermodynamics | Animals | Humans | Mice | SOX9 Transcription Factor - chemistry | Chromosomes, Human - metabolism | Genetic Loci | Chromatin - chemistry | Index Medicus
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3. Full Text Evaluation of the performance of Dutch Lipid Clinic Network score in an Italian FH population: The LIPIGEN study
by Casula, Manuela and Olmastroni, Elena and Pirillo, Angela and Catapano, Alberico Luigi and Arca, Marcello and Averna, Maurizio and Bertolini, Stefano and Calandra, Sebastiano and Catapano, Alberico Luigi and Tarugi, Patrizia and Pellegatta, Fabio and Angelico, Francesco and Bartuli, Andrea and Biasucci, Giacomo and Biolo, Gianni and Bonanni, Luca and Bonomo, Katia and Borghi, Claudio and Bossi, Antonio Carlo and Branchi, Adriana and Carubbi, Francesca and Cipollone, Francesco and Citroni, Nadia and Federici, Massimo and Ferri, Claudio and Fiorenza, Anna Maria and Giaccari, Andrea and Giorgino, Francesco and Guardamagna, Ornella and Iannuzzi, Arcangelo and Iughetti, Lorenzo and Lupattelli, Graziana and Lupi, Alessandro and Mandraffino, Giuseppe and Marcucci, Rossella and Maroni, Lorenzo and Miccoli, Roberto and Mombelli, Giuliana and Muntoni, Sandro and Pecchioli, Valerio and Pederiva, Cristina and Pipolo, Antonio and Pisciotta, Livia and Pujia, Arturo and Purrello, Francesco and Repetti, Elena and Rubba, Paolo and Sabbà, Carlo and Sampietro, Tiziana and Sarzani, Riccardo and Tagliabue, Milena Paola and Trenti, Chiara and Vigna, Giovanni Battista and Werba, Josè Pablo and Zambon, Sabina and Zenti, Maria Grazia and Minicocci, Ilenia and Noto, Davide and Fortunato, Giuliana and Banderali, Giuseppe and Benso, Andrea and Bigolin, Paola and Bonora, Enzo and Bruzzi, Patrizia and Bucci, Marco and Buonuomo, Paola Sabrina and Capra, Maria Elena and Cardolini, Iris and Cefalù, Baldassarre and Cervelli, Nazzareno and Chiariello, Giuseppe and Cocci, Guido and Colombo, Emanuela and Cremonini, Anna Laura and D'Addato, Sergio and D'Erasmo, Laura and Dal Pino, Beatrice and De Sanctis, Luisa and De Vita, Emanuele and Del Ben, Maria and Di Costanzo, Alessia and Di Taranto, Maria Donata and Fasano, Tommaso and Gentile, Luigi and Gentile, Marco and Ghirardello, Omar and Grigore, Liliana and Lussu, Milena and Meregalli, Giancarla and Moffa, Simona and Montalcini, Tiziana and Morgia, Valeria and Nascimbeni, Fabio and Pasta, Andrea and Pavanello, Chiara and Saitta, Antonino and Scicali, Roberto and Siepi, Donatella and Spagnolli, Walter and Spina, Rossella and ... and Participant Laboratories and Participant Centers and STUDY CENTRAL LABORATORY AND ANALYSIS GROUP and MEMBERS OF THE LIPIGEN STEERING COMMETTEE and PRINCIPAL INVESTIGATORS: Coordinator center and COLLABORATORS and LIPIGEN Grp
Atherosclerosis, ISSN 0021-9150, 10/2018, Volume 277, pp. 413 - 418
Dutch Lipid Clinic Network score | Familial hypercholesterolemia | Genetic testing | Cardiac & Cardiovascular Systems | Peripheral Vascular Disease | Life Sciences & Biomedicine | Cardiovascular System & Cardiology | Science & Technology | Hypercholesterolemia | Blood cholesterol | Low density lipoproteins | Analysis | Index Medicus
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4. Full Text Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis
by Kragesteen, Bjørt K and Spielmann, Malte and Paliou, Christina and Heinrich, Verena and Schöpflin, Robert and Esposito, Andrea and Annunziatella, Carlo and Bianco, Simona and Chiariello, Andrea M and Jerković, Ivana and Harabula, Izabela and Guckelberger, Philine and Pechstein, Michael and Wittler, Lars and Chan, Wing-Lee and Franke, Martin and Lupiáñez, Darío G and Kraft, Katerina and Timmermann, Bernd and Vingron, Martin and Visel, Axel and Nicodemi, Mario and Mundlos, Stefan and Andrey, Guillaume
Nature genetics, ISSN 1061-4036, 10/2018, Volume 50, Issue 10, pp. 1463 - 1473
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Paired Box Transcription Factors - genetics | Chromatin - metabolism | Morphogenesis - genetics | Embryo, Mammalian | Forelimb - embryology | Molecular Conformation | Gene Expression Regulation, Developmental - genetics | Paired Box Transcription Factors - physiology | Chromatin Assembly and Disassembly - genetics | Mice, Transgenic | DNA - metabolism | Forelimb - metabolism | DNA - chemistry | Animals | CRISPR-Cas Systems | Hindlimb - embryology | Enhancer Elements, Genetic - physiology | Mice | Nucleic Acid Conformation | Chromatin - genetics | Hindlimb - metabolism | Chromatin - chemistry | Morphogenesis | Chromatin | Research | Health aspects | Extremities (Anatomy) | Transcription factors | Transformation | Genomes | Gene expression | Enhancers | Polymer melts | Animal tissues | Rodents | Stem cells | Pituitary gland | Sensors | Evolution & development | Three dimensional models | Arm | Conformation | Index Medicus
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5. Full Text Predicting chromatin architecture from models of polymer physics
by Bianco, Simona and Chiariello, Andrea M and Annunziatella, Carlo and Esposito, Andrea and Nicodemi, Mario
Chromosome research, ISSN 0967-3849, 3/2017, Volume 25, Issue 1, pp. 25 - 34
Life Sciences | Human Genetics | Brownian motion | Stochastic analysis | Molecular dynamics simulation | Classical statistical mechanics | Random processes | Chromosomes | Fluctuation phenomena | Cell Biology | Animal Genetics and Genomics | Plant Genetics & Genomics | Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Science & Technology | Chromatin - ultrastructure | Chromosomes - ultrastructure | Animals | Epigenomics | Humans | Models, Molecular | Polymers - chemistry | Chromatin | Genetic disorders | Analysis | Genes | Stochastic processes | Molecular dynamics | Models | Polymer industry | Polymers | Gene expression | Simulation | Physics | Index Medicus
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6. Full Text The Interplay between Phase Separation and Gene-Enhancer Communication: A Theoretical Study
by Chiariello, Andrea M and Corberi, Federico and Salerno, Mario
Biophysical journal, ISSN 0006-3495, 08/2020, Volume 119, Issue 4, pp. 873 - 883
Life Sciences & Biomedicine | Biophysics | Science & Technology | Genetic research | Molecular dynamics | Chromatin | Genes | Protein binding | Index Medicus
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7. Full Text Polymer physics predicts the effects of structural variants on chromatin architecture
by Bianco, Simona and Lupiáñez, Darío G and Chiariello, Andrea M and Annunziatella, Carlo and Kraft, Katerina and Schöpflin, Robert and Wittler, Lars and Andrey, Guillaume and Vingron, Martin and Pombo, Ana and Mundlos, Stefan and Nicodemi, Mario
Nature genetics, ISSN 1061-4036, 05/2018, Volume 50, Issue 5, pp. 662 - 667
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Cell Line | Gene Expression - genetics | Humans | Mice, Inbred C57BL | CCCTC-Binding Factor - genetics | Chromatin Assembly and Disassembly - genetics | Promoter Regions, Genetic - genetics | Animals | Chromosomes - genetics | Receptor, EphA4 - genetics | Polymers - chemistry | Enhancer Elements, Genetic - genetics | Mice | Chromatin - genetics | Chromatin - chemistry | Chromatin | Genes | Genomics | Models | Genomes | Polymer industry | Comparative analysis | Gene expression | Polymers | Annealing | EphA4 protein | Loci | Physics | Limb buds | Domains | Polymer melts | Rewiring | Polymer physics | Predictions | Stem cells | Fibroblasts | Mathematical models | Three dimensional models | Chromosomes | Folding | Conformation | Index Medicus
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8. Full Text A modern challenge of polymer physics: Novel ways to study, interpret, and reconstruct chromatin structure
by Fiorillo, Luca and Bianco, Simona and Esposito, Andrea and Conte, Mattia and Sciarretta, Renato and Musella, Francesco and Chiariello, Andrea M
Wiley interdisciplinary reviews. Computational molecular science, ISSN 1759-0876, 07/2020, Volume 10, Issue 4, p. n/a
genetics | chromatin structure | molecular dynamics | polymer physics | Physical Sciences | Chemistry | Life Sciences & Biomedicine | Chemistry, Multidisciplinary | Science & Technology | Mathematical & Computational Biology | Pathogens | Chromatin | Architecture | Physical chemistry | Molecular dynamics | Genomes | Biophysics | EphA4 protein | Statistics | Physics | Polymer physics | Cell lines | Computer applications | Mechanics | Models | Interdisciplinary research | Interdisciplinary studies | Polymers | Statistical mechanics
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9. Full Text Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
by Oudelaar, A. Marieke and Davies, James O. J and Hanssen, Lars L. P and Telenius, Jelena M and Schwessinger, Ron and Liu, Yu and Brown, Jill M and Downes, Damien J and Chiariello, Andrea M and Bianco, Simona and Nicodemi, Mario and Buckle, Veronica J and Dekker, Job and Higgs, Douglas R and Hughes, Jim R
Nature genetics, ISSN 1061-4036, 12/2018, Volume 50, Issue 12, pp. 1744 - 1751
Life Sciences & Biomedicine | Genetics & Heredity | Science & Technology | Chromatin - metabolism | Promoter Regions, Genetic | Mice, Inbred C57BL | Regulatory Sequences, Nucleic Acid | Cells, Cultured | Binding Sites - genetics | Genetic Loci | Linkage Disequilibrium | Transcription Factors - metabolism | Globins - genetics | Animals | Enhancer Elements, Genetic | Gene Expression Regulation, Developmental | Base Sequence | Alleles | Female | Mice | Chromatin - genetics | Chromatin - chemistry | Chromatin | Research | Gene expression | Genetic regulation | Genetic epistasis | Genomes | Regulatory sequences | Parameter identification | Promoters | Domains | Enhancers | Stem cells | Hubs | Chromosomes | Boundary element method | Binding sites | Conformation | Index Medicus
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