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1. Full Text An Extensive MicroRNA-Mediated Network of RNA-RNA Interactions Regulates Established Oncogenic Pathways in Glioblastoma
by Sumazin, Pavel and Yang, Xuerui and Chiu, Hua-Sheng and Chung, Wei-Jen and Iyer, Archana and Llobet-Navas, David and Rajbhandari, Presha and Bansal, Mukesh and Guarnieri, Paolo and Silva, Jose and Califano, Andrea
Cell (Cambridge), ISSN 0092-8674, 10/2011, Volume 147, Issue 2, pp. 370 - 381
Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Multivariate Analysis | PTEN Phosphohydrolase - genetics | Glioblastoma - genetics | RNA Interference | Humans | Gene Expression Regulation, Neoplastic | Glioblastoma - metabolism | MicroRNAs - metabolism | Oncogenes | Platelet-derived growth factor | Gene expression | Glioblastoma multiforme | Analysis | Genes | MicroRNA | Genetic research | Cells | Index Medicus
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2. Full Text LIN28 Selectively Modulates a Subclass of Let-7 MicroRNAs
by Ustianenko, Dmytro and Chiu, Hua-Sheng and Treiber, Thomas and Weyn-Vanhentenryck, Sebastien M and Treiber, Nora and Meister, Gunter and Sumazin, Pavel and Zhang, Chaolin
Molecular cell, ISSN 1097-2765, 07/2018, Volume 71, Issue 2, pp. 271 - 283.e5
bipartite binding | stem cell | LIN28 | let-7 microRNA biogenesis | cancer | cold shock domain | selective suppression | CLIP | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Science & Technology | Cell Biology | Protein Structure, Tertiary | RNA-Binding Proteins - genetics | Humans | Models, Molecular | MicroRNAs - metabolism | Hep G2 Cells | Animals | Base Sequence | K562 Cells | Protein Domains | RNA Precursors - metabolism | Mice | MicroRNAs - genetics | Embryonic Stem Cells | Nucleic Acid Conformation | RNA-Binding Proteins - metabolism | Shock | Medical colleges | MicroRNA | Genetic transcription | Stem cells | Protein binding | Index Medicus
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3. Full Text High-throughput validation of ceRNA regulatory networks
by Chiu, Hua-Sheng and Martínez, María Rodríguez and Bansal, Mukesh and Subramanian, Aravind and Golub, Todd R and Yang, Xuerui and Sumazin, Pavel and Califano, Andrea
BMC genomics, ISSN 1471-2164, 05/2017, Volume 18, Issue 1, pp. 418 - 418
LINCS | PRAD | BRCA | MicroRNA | CeRNA | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Sequence Analysis, RNA | MCF-7 Cells | Humans | Databases, Genetic | High-Throughput Nucleotide Sequencing | MicroRNAs - genetics | Gene Regulatory Networks | Statistical analysis | RNA-mediated interference | Genes | Gene expression | Ribonucleic acid--RNA | Gene silencing | Algorithms | Cellular communication | Computer applications | Breast | miRNA | Mathematical models | Prostate | Cancer | Tumors | Index Medicus | ceRNA | microRNA
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4. Full Text Pan‐cancer clinical and molecular analysis of racial disparities
by Lara, Olivia D and Wang, Ying and Asare, Amma and Xu, Tao and Chiu, Hua‐Sheng and Liu, Yuexin and Hu, Wei and Sumazin, Pavel and Uppal, Shitanshu and Zhang, Lin and Rauh‐Hain, J. Alejandro and Sood, Anil K
Cancer, ISSN 0008-543X, 02/2020, Volume 126, Issue 4, pp. 800 - 807
microRNAs | RNA | pan‐cancer | African Americans | epigenomics | health care disparities | long noncoding | Life Sciences & Biomedicine | Oncology | Science & Technology | United States - epidemiology | European Continental Ancestry Group - genetics | Health Status Disparities | Humans | Middle Aged | African Americans - genetics | European Continental Ancestry Group - statistics & numerical data | Male | Incidence | African Americans - statistics & numerical data | Neoplasms - ethnology | Neoplasms - genetics | Epigenesis, Genetic - genetics | Survival Analysis | Female | Aged | MicroRNAs - genetics | SEER Program - statistics & numerical data | Neoplasms - epidemiology | Prostate carcinoma | Racial differences | Genomes | Social factors | Drug resistance | Epidemiology | Thyroid carcinoma | Databases | DNA methylation | miRNA | Deoxyribonucleic acid--DNA | Thyroid | Mortality | Abnormalities | Socio-economic aspects | Uniqueness | Ribonucleic acid--RNA | Gene expression | Computer programs | Survival analysis | Surveillance | Epigenetics | Breast | Prostate | Cancer | Tumors | Index Medicus | Abridged Index Medicus | Long Noncoding | Healthcare disparities | Pan-cancer
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5. Full Text Maternal exposure to air pollutants and risk of gestational diabetes mellitus in Taiwan
by Shen, Hsiu-Nien and Hua, Sheng-Yuan and Chiu, Chang-Ta and Li, Chung-Yi
International journal of environmental research and public health, ISSN 1661-7827, 12/2017, Volume 14, Issue 12, p. 1604
Gestational diabetes mellitus | Air pollution | Nested case-control study | Dose-response relationship | Public, Environmental & Occupational Health | Environmental Sciences & Ecology | Life Sciences & Biomedicine | Science & Technology | Environmental Sciences | Outdoor air quality | Pollution control | Diabetes mellitus | Health risks | Spatial analysis | Pollution monitoring | Air quality | Risk | Exposure | Environmental risk | Kriging | Sulfur dioxide | Pregnancy | Confidence intervals | Studies | Pollution effects | Particulate matter | Air monitoring | Pollutants | Environmental monitoring | Air quality assessments | Health risk assessment | Index Medicus | air pollution | nested case-control study | gestational diabetes mellitus | dose-response relationship
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6. Full Text The number of titrated microRNA species dictates ceRNA regulation
by Chiu, Hua-Sheng and Martínez, María Rodríguez and . Komissarova, Elena V and Llobet-Navas, David and Bansal, Mukesh and Paull, Evan O and Silva, José and Yang, Xuerui and Sumazin, Pavel and Califano, Andrea
Nucleic acids research, ISSN 0305-1048, 05/2018, Volume 46, Issue 9, pp. 4354 - 4369
Life Sciences & Biomedicine | Biochemistry & Molecular Biology | Science & Technology | Neoplasms - metabolism | MicroRNAs - metabolism | Neoplasms - genetics | RNA, Neoplasm - metabolism | Humans | Gene Expression Regulation, Neoplastic | Computational Biology
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7. Full Text Cupid: Simultaneous reconstruction of micrornatarget and cerna networks
by Chiu, Hua-Sheng and Llobet-Navas, David and Yang, Xuerui and Chung, Wei-Jen and Ambesi-Impiombato, Alberto and Iyer, Archana and Kim, Hyunjae Ryan and Seviour, Elena G and Luo, Zijun and Sehgal, Vasudha and Moss, Tyler and Lu, Yiling and Ram, Prahlad and Silva, José and Mills, Gordon B and Califano, Andrea and Sumazin, Pavel
Genome research, ISSN 1088-9051, 02/2015, Volume 25, Issue 2, pp. 257 - 267
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8. Full Text Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes
by Rombaut, Dries and Chiu, Hua-Sheng and Decaesteker, Bieke and Everaert, Celine and Yigit, Nurten and Peltier, Agathe and Janoueix, Isabelle and Bartenhagen, Christoph and Fischer, Matthias and Roberts, Stephen and D’Haene, Nicky and De Preter, Katleen and Speleman, Frank and Denecker, Geertrui and Sumazin, Pavel and Vandesompele, Jo and Lefever, Steve and Mestdagh, Pieter
Scientific reports, ISSN 2045-2322, 12/2019, Volume 9, Issue 1, pp. 5685 - 5685
Science & Technology - Other Topics | Multidisciplinary Sciences | Science & Technology | Coding | Neuroblasts | Stromal cells | Tumor cell lines | Neuroblastoma | Ribonucleic acid--RNA | Gene expression | Neuromodulation | Phox2b protein | Tumors | Cancer | Index Medicus
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9. Full Text Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks
by Chiu, Hua-Sheng and Llobet-Navas, David and Yang, Xuerui and Chung, Wei-Jen and Ambesi-Impiombato, Alberto and lyer, Archana and Kim, Hyunjae Ryan and Seviour, Elena G and Luo, Zijun and Sehga, Vasudha and Moss, Tyler and Lu, Yiling and Ram, Prahlad and Silva, Jose and Mills, Gordon B and Califano, Andrea and Sumazin, Pavel
Genome research, ISSN 1088-9051, 02/2015, Volume 25, Issue 2, pp. 257 - 267
Biochemistry & Molecular Biology | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Computational Biology - methods | Humans | RNA, Messenger - genetics | Gene Expression Regulation, Neoplastic | Gene Expression Profiling | Gene Regulatory Networks | Breast Neoplasms - metabolism | Algorithms | Breast Neoplasms - genetics | Estrogen Receptor alpha - genetics | RNA Interference | Epistasis, Genetic | Cell Line, Tumor | Estrogen Receptor alpha - metabolism | Female | RNA, Messenger - chemistry | MicroRNAs - genetics | 3' Untranslated Regions | Binding Sites | MicroRNAs - chemistry | Cluster Analysis | MicroRNA | Chemical properties | Research | Genetic recombination | Methods | Index Medicus | Method
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10. Full Text Author Correction: Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes
by Rombaut, Dries and Chiu, Hua-Sheng and Decaesteker, Bieke and Everaert, Celine and Yigit, Nurten and Peltier, Agathe and Janoueix-Lerosey, Isabelle and Bartenhagen, Christoph and Fischer, Matthias and Roberts, Stephen and D'Haene, Nicky and De Preter, Katleen and Speleman, Frank and Denecker, Geertrui and Sumazin, Pavel and Vandesompele, Jo and Lefever, Steve and Mestdagh, Pieter
Scientific reports, ISSN 2045-2322, 07/2019, Volume 9, Issue 1, pp. 10536 - 1
Neuroblastoma
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