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1. Full Text Tumour-associated and non-tumour-associated microbiota in colorectal cancer
by Flemer, Burkhardt and Lynch, Denise B and Brown, Jillian M R and Jeffery, Ian B and Ryan, Feargal J and Claesson, Marcus J and O'Riordain, Micheal and Shanahan, Fergus and O'Toole, Paul W
Gut, ISSN 0017-5749, 04/2017, Volume 66, Issue 4, pp. 633 - 643
Gastroenterology & Hepatology | Life Sciences & Biomedicine | Science & Technology | Colonic Neoplasms - genetics | Prospective Studies | Humans | Middle Aged | RNA, Ribosomal, 16S - analysis | Male | Chemokine CXCL1 - genetics | Case-Control Studies | Interleukin-23 - genetics | Feces - microbiology | Prevotella - immunology | Colonic Polyps - genetics | Colonic Polyps - microbiology | Rectal Neoplasms - genetics | Aged, 80 and over | Bacteroidetes - immunology | Adult | Chemokine CCL20 - genetics | Female | Plasminogen Activator Inhibitor 1 - genetics | Bacteroidetes - isolation & purification | Gene Expression | Firmicutes - isolation & purification | Interleukin-17 - genetics | Firmicutes - immunology | Intestinal Mucosa - microbiology | Gastrointestinal Microbiome - genetics | Rectal Neoplasms - microbiology | Antigens, Bacterial - analysis | Aged | Colon - microbiology | Prevotella - isolation & purification | Colonic Neoplasms - microbiology | Microbiota (Symbiotic organisms) | Colorectal cancer | Research | Index Medicus | Abridged Index Medicus | GENE EXPRESSION | INTESTINAL MICROBIOLOGY | COLORECTAL CANCER | 1506 | Gut Microbiota
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2. Full Text 16S rRNA gene sequencing of mock microbial populations-impact of DNA extraction method, primer choice and sequencing platform
by Fouhy, Fiona and Clooney, Adam G and Stanton, Catherine and Claesson, Marcus J and Cotter, Paul D
BMC microbiology, ISSN 1471-2180, 06/2016, Volume 16, Issue 1, pp. 123 - 123
Gut microbiota | Ion PGM | 16S rRNA | DNA extraction | Next-generation sequencing | Bias | Mock communities | MiSeq | Life Sciences & Biomedicine | Microbiology | Science & Technology | Bacteria - isolation & purification | Microbiota | DNA, Bacterial - genetics | DNA, Bacterial - isolation & purification | Bacteria - classification | RNA, Ribosomal, 16S - genetics | RNA, Ribosomal, 16S - isolation & purification | DNA Primers - genetics | High-Throughput Nucleotide Sequencing | Bacteria - genetics | Ribosomal RNA | Physiological aspects | Genetic aspects | Research | Nucleotide sequencing | Microbial colonies | DNA sequencing | Index Medicus
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3. Full Text A clinician's guide to microbiome analysis
by Claesson, Marcus J and Clooney, Adam G and O'Toole, Paul W
Nature reviews. Gastroenterology & hepatology, ISSN 1759-5045, 10/2017, Volume 14, Issue 10, pp. 585 - 595
Gastroenterology & Hepatology | Life Sciences & Biomedicine | Science & Technology | Computational Biology - methods | Genetic Techniques | Research Design | Humans | Gastrointestinal Microbiome | Metagenomics - methods | Physiological aspects | Genetic aspects | Research | Microbiota (Symbiotic organisms) | Microbiota | Intestinal microflora | Intestine | Therapeutic applications | Index Medicus
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4. Full Text Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences
by Narayan, Nicole R and Weinmaier, Thomas and Laserna-Mendieta, Emilio J and Claesson, Marcus J and Shanahan, Fergus and Dabbagh, Karim and Iwai, Shoko and Desantis, Todd Z
BMC genomics, ISSN 1471-2164, 01/2020, Volume 21, Issue 1, pp. 56 - 56
Phylogenetic analysis | Metagenomics | Genomic databases | Shotgun sequencing | Sequence alignment | Genetics & Heredity | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Science & Technology | Anopheles | Databases | Ribosomal RNA | Genes | Analysis | Genomics | Genomes | Phylogeny | Nucleotide sequencing | DNA sequencing | Microbial activity | rRNA 16S | Error analysis | Parameters | Taxonomy | Test procedures | Clustering | Gene sequencing | Datasets | Accuracy | Microorganisms | Error correction & detection | Researchers | Predictions | Phylogenetics | Cutoffs | Error correction | Index Medicus
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5. Full Text SPINGO: A rapid species-classifier for microbial amplicon sequences
by Allard, Guy and Ryan, Feargal J and Jeffery, Ian B and Claesson, Marcus J
BMC bioinformatics, ISSN 1471-2105, 10/2015, Volume 16, Issue 1, pp. 324 - 324
Metagenomics | Microbiota composition | cpn60 | Species-classification | 16S rRNA gene amplicons | Biochemistry & Molecular Biology | Life Sciences & Biomedicine | Biotechnology & Applied Microbiology | Biochemical Research Methods | Science & Technology | Mathematical & Computational Biology | Sequence Analysis, RNA | Bacteria - classification | RNA, Ribosomal, 16S - genetics | High-Throughput Nucleotide Sequencing | Software | Bacteria - genetics | Design | Accuracy | Algorithms | Databases | Taxonomy | Genes | Classification | Software upgrading | Vocabularies & taxonomies | Streptococcus infections | Index Medicus
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6. Full Text Categorization of the gut microbiota: Enterotypes or gradients?
by Jeffery, Ian B and Claesson, Marcus J and O'Toole, Paul W and Shanahan, Fergus
Nature reviews. Microbiology, ISSN 1740-1526, 2012, Volume 10, Issue 9, pp. 591 - 592
Life Sciences & Biomedicine | Microbiology | Science & Technology | High-Throughput Nucleotide Sequencing - utilization | Gastrointestinal Tract - physiology | Biota | Humans | Bacteria - classification | Gastrointestinal Tract - microbiology | High-Throughput Nucleotide Sequencing - methods | Metagenome | Gastrointestinal Diseases - microbiology | Cluster Analysis | Index Medicus
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7. Full Text An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota
by Jeffery, Ian B and O'Toole, Paul W and Öhman, Lena and Claesson, Marcus J and Deane, Jennifer and Quigley, Eamonn M M and Simrén, Magnus and Göteborgs universitet and Gothenburg University and Centrum för personcentrerad vård vid Göteborgs universitet (GPCC) and Institutionen för medicin, avdelningen för invärtesmedicin och klinisk nutrition and Institutionen för biomedicin, avdelningen för mikrobiologi och immunologi and Sahlgrenska Academy and Sahlgrenska akademin and Institute of Biomedicine, Department of Microbiology and Immunology and University of Gothenburg Centre for person-centred care (GPCC) and Institute of Medicine, Department of Internal Medicine and Clinical Nutrition
Gut, ISSN 0017-5749, 07/2012, Volume 61, Issue 7, pp. 997 - 1006
Gastroenterology & Hepatology | Life Sciences & Biomedicine | Science & Technology | Gastroenterology. Liver. Pancreas. Abdomen | Stomach. Duodenum. Small intestine. Colon. Rectum. Anus | Biological and medical sciences | Medical sciences | Other diseases. Semiology | Bacteroidetes - isolation & purification | Humans | Male | Clostridium - genetics | Clostridium - isolation & purification | Case-Control Studies | Gram-Positive Bacteria - genetics | Irritable Bowel Syndrome - microbiology | Feces - microbiology | Metagenome - genetics | Irritable Bowel Syndrome - diagnosis | Gram-Positive Bacteria - isolation & purification | Quality of Life | Adult | Female | Surveys and Questionnaires | Genes, rRNA | Bacteroidetes - genetics | Studies | Probiotics | Antibiotics | Vocabularies & taxonomies | Irritable bowel syndrome | Quality of life | Index Medicus | Abridged Index Medicus | Microbiology in the medical area | Mikrobiologi inom det medicinska området | Gastroenterology and Hepatology | Gastroenterologi
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8. Full Text Gut microbiota: Changes throughout the lifespan from infancy to elderly
by O'Toole, Paul W and Claesson, Marcus J
International dairy journal, ISSN 0958-6946, 04/2010, Volume 20, Issue 4, pp. 281 - 291
Fundamental and applied biological sciences. Psychology | Food industries | Biological and medical sciences | Milk and cheese industries. Ice creams | Aged
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9. Full Text Regulation of prefrontal cortex myelination by the microbiota
by Hoban, A.E and Stilling, R.M and Ryan, F.J and Shanahan, F and Dinan, T.G and Claesson, M.J and Clarke, G and Cryan, J.F
Translational psychiatry, ISSN 2158-3188, 04/2016, Volume 6, Issue 4, pp. e774 - e774
Life Sciences & Biomedicine | Psychiatry | Science & Technology | Prefrontal Cortex - microbiology | Microscopy, Electron, Transmission | Microbiota - physiology | Synaptic Transmission - physiology | Synaptic Transmission - genetics | Gene Expression Profiling - methods | Up-Regulation - genetics | Transcriptome - genetics | Blotting, Western | Myelin Sheath - metabolism | Animals | Microbiota - genetics | Myelin Sheath - genetics | Up-Regulation - physiology | Prefrontal Cortex - metabolism | Mice | Transcriptome - physiology | Real-Time Polymerase Chain Reaction | Index Medicus | Original
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