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Nature Communications, ISSN 2041-1723, 12/2019, Volume 10, Issue 1, pp. 1014 - 11
Metagenomic sequencing has greatly improved our ability to profile the composition of environmental and host-associated microbial communities. However, the... 
STRAINS | ACCURATE | QUALITY | SEQUENCES | METAGENOME | RECONSTRUCTION | MULTIDISCIPLINARY SCIENCES | TREE | DIVERSITY | Microbial activity | Microorganisms | Introduced species | Profiling | Transcription | Taxonomy | Relative abundance | Dependence | Abundance | Genomes | Phylogeny | Life Sciences | Quantitative Methods
Journal Article
NATURE MEDICINE, ISSN 1078-8956, 04/2019, Volume 25, Issue 4, pp. 679 - 679
Journal Article
Nature, ISSN 0028-0836, 08/2018, Volume 560, Issue 7717, p. 233
Soils harbour some of the most diverse microbiomes on Earth and are essential for both nutrient cycling and carbon storage. To understand soil functioning, it... 
Biological Sciences | Naturvetenskap | Microbiology | Mikrobiologi | Biologi | Natural Sciences
Journal Article
Microbiome, ISSN 2049-2618, 06/2019, Volume 7, Issue 1, pp. 84 - 10
Shotgun metagenomes contain a sample of all the genomic material in an environment, allowing for the characterization of a microbial community. In order to... 
Domain-specific language | Metagenomics | Next-generation sequencing | Usage | Public software | Microbiota | Error correction & detection | Language | Taxonomy | Semantics | Computer applications | Software | Gene mapping | Bioinformatics | Programming languages | Data bases
Journal Article
Bioinformatics1998-01-01+01:00, ISSN 1367-4803, 07/2015, Volume 31, Issue 14, p. 70
MOTIVATION: Neutrophil extracellular traps (NETs) are believed to be essential in controlling several bacterial pathogens. Quantification of NETs in vitro is... 
Reproducibility of Results | Algorithms | Research Support, Non-U.S. Gov't | Humans | Neutrophils | Image Interpretation, Computer-Assisted | Extracellular Traps | Software | Pattern Recognition, Automated | Microscopy, Fluorescence | Observer Variation | Journal Article
Journal Article
Molecular Microbiology, ISSN 0950-382X, 08/2014, Volume 93, Issue 4, p. 645
  Trypanosoma brucei is a unicellular parasite that causes sleeping sickness in humans. Most of its transcription is constitutive and driven by RNA polymerase... 
Parasites | RNA polymerase | Molecular biology | Ribonucleic acid--RNA
Journal Article
Science, ISSN 0036-8075, 05/2015, Volume 348, Issue 6237, pp. 1261359 - 1261359
Microbes are dominant drivers of biogeochemical processes, yet drawing a global picture of functional diversity, microbial community structure, and their... 
BACTERIAL DIVERSITY | MULTIDISCIPLINARY SCIENCES | GENES | MARINE-BACTERIA | METAGENOMES | PATTERNS | SAMPLING EXPEDITION | COMMUNITIES | RIBOSOMAL-RNA | SEA | TOOL | Microbiology | Oceans | Ecosystems | Geography | Microorganisms | Communities | Genes | Viruses | Globes | Stratification | Physics | Geophysics
Journal Article
Journal of Open Research Software, ISSN 2049-9647, 10/2017, Volume 5, Issue 1
As computational pipelines become a bigger part of science, it is important to ensure that the results are reproducible, a concern which has come to the fore... 
Parallel processing | Computer programming | Usage | Python (Programming language) | Methods | Software engineering | Data analysis | Parallel programming | Computational science | High performance computing | Memoization | Reproducible computation | Python
Journal Article
Nature, ISSN 0028-0836, 04/2016, Volume 532, Issue 7600, pp. 465 - 470
Journal Article
Nature, ISSN 0028-0836, 08/2018, Volume 560, Issue 7717, pp. 233 - 237
Soils harbour some of the most diverse microbiomes on Earth and are essential for both nutrient cycling and carbon storage. To understand soil functioning, it... 
BIODIVERSITY | READ ALIGNMENT | ACCURATE | SEQUENCES | BIOGEOGRAPHY | FUNGAL | MULTIDISCIPLINARY SCIENCES | SOIL | DIVERSITY | BACTERIAL | COMMUNITIES | Metagenomics | Microbiota - physiology | Oceans and Seas | Seawater - microbiology | Soil Microbiology | Fungi - isolation & purification | Drug Resistance, Microbial - genetics | Biodiversity | Bacteria - genetics | DNA Barcoding, Taxonomic | Fungi - genetics | Bacteria - isolation & purification | Rain | Microbiota - genetics | Earth (Planet) | Hydrogen-Ion Concentration | Identification and classification | Soil microbiology | Microbial activity | Cycles | Communities | Ecosystems | Taxonomy | Carbon storage | Genes | Microbiomes | Biogeography | Genomes | Biomass | Fungi | Datasets | Antagonism | Precipitation | Microorganisms | Phylogenetics | Bacteria | Nutrients | Carbon capture and storage | Bioinformatics | Deoxyribonucleic acid--DNA | Distribution patterns | Soil chemistry | Topsoil | Composition | Filtration | Genetic diversity | Carbon sequestration | Carbon cycle | Soils | Soil pH | Soil microorganisms | Antibiotics | Nutrient cycles | Structure-function relationships | Biological Sciences | Miljövetenskap | Microbiology | Mikrobiologi | Ecology | Geovetenskap och miljövetenskap | Naturvetenskap | Biologiska vetenskaper | Evolutionsbiologi | Natural Sciences | Evolutionary Biology | Ekologi | Earth and Related Environmental Sciences | Environmental Sciences | EPS | Bioinformatica
Journal Article