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index medicus (137) 137
animals (130) 130
genetics & heredity (95) 95
chickens - genetics (67) 67
genetics (59) 59
genome (53) 53
genomics (47) 47
agriculture, dairy & animal science (45) 45
research (44) 44
chicken (40) 40
genetic aspects (39) 39
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polymorphism, single nucleotide (37) 37
animal breeding and genomics (36) 36
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leerstoelgroep fokkerij en genetica (36) 36
evolution (35) 35
wias (35) 35
chromosome mapping (34) 34
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research article (34) 34
genomes (33) 33
genotype (31) 31
biotechnology & applied microbiology (29) 29
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chromosomes (27) 27
genes (26) 26
quantitative trait loci (25) 25
chickens (23) 23
markers (23) 23
sequence analysis, dna (23) 23
single nucleotide polymorphisms (23) 23
genetic diversity (22) 22
genetic variation (22) 22
population genetics (22) 22
swine (22) 22
analysis (21) 21
breeding of animals (21) 21
genetic markers (21) 21
selection (21) 21
base sequence (19) 19
biotechnology (19) 19
birds (19) 19
evolutionary biology (19) 19
genetics, population (19) 19
breeding (18) 18
expression (17) 17
molecular sequence data (17) 17
physiological aspects (17) 17
swine - genetics (17) 17
biochemistry & molecular biology (16) 16
diversity (16) 16
ecology (16) 16
microsatellite repeats (16) 16
polymorphism (16) 16
europe (15) 15
life sciences (15) 15
linkage map (15) 15
population (15) 15
sequence (15) 15
dna (14) 14
map (14) 14
phylogeny (14) 14
poultry (14) 14
single-nucleotide polymorphism (14) 14
sus scrofa - genetics (14) 14
animal genetics (13) 13
conservation (13) 13
phenotype (13) 13
association (12) 12
breeds (12) 12
domestication (12) 12
evolution, molecular (12) 12
gene frequency (12) 12
growth (12) 12
hogs (12) 12
linkage disequilibrium (12) 12
populations (12) 12
species specificity (12) 12
chromosomes - genetics (11) 11
crosses, genetic (11) 11
genetic linkage (11) 11
genetic research (11) 11
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multidisciplinary sciences (11) 11
mutation (11) 11
biology (10) 10
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cell biology (10) 10
deoxyribonucleic acid--dna (10) 10
in situ hybridization, fluorescence (10) 10
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microsatellite markers (10) 10
pigs (10) 10
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1. Full Text Bringing back the aurochs : By conjuring the extinct ancestor of modern cattle, breeders are making Europe just a little wilder (interview with Richard Crooijmans, Maulik Upadhyay and Johan van Arendonk)
by Stokstad, Erik and Crooijmans, R.P.M.A and Upadhyay, Maulik and Arendonk, J.A.M., van
Science, ISSN 0036-8075, 2015, Volume 350
The aurochs was the wild ancestor of modern cattle. With large horns and great strength, it inspired awe and fear until it went extinct in 1627. After a failed... 
Aurochs
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2. Full Text Bringing back the aurochs
by Stokstad, Erik and Crooijmans, R.P.M.A and Upadhyay, Maulik and Arendonk, van, J.A.M
Science, ISSN 0036-8075, 2015, Volume 350, Issue 6265, pp. 1144 - 1147
The aurochs was the wild ancestor of modern cattle. With large horns and great strength, it inspired awe and fear until it went extinct in 1627. After a failed... 
MULTIDISCIPLINARY SCIENCES | Animals | Extinction, Biological | Breeding | Cattle | Europe | Deoxyribonucleic acid | Horns | Farmlands | Biologists | Strength | Fossils | Nature reserves
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3. Full Text Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
by Hillier, L.W and Miller, W and Birney, E and Groenen, M.A.M and Crooijmans, R.P.M.A and Aerts, J and Poel, van der, J.J and International Chicken Genome Sequencing Consortium and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Evolutionsbiologi and Institutionen för evolution, genomik och systematik and Teknisk-naturvetenskapliga vetenskapsområdet and Biologiska sektionen and Uppsala universitet
Nature, ISSN 0028-0836, 2004, Volume 432, Issue 7018, pp. 695 - 716
We present here a draft genome sequence of the red jungle fowl, Gallus gallus. Because the chicken is a modern descendant of the dinosaurs and the first... 
MOUSE GENOME | NON-LTR RETROTRANSPOSONS | ALCOHOL-DEHYDROGENASE | PHYLOGENETIC ANALYSIS | MULTIDISCIPLINARY SCIENCES | BROWN-NORWAY RAT | RECENT SEGMENTAL DUPLICATIONS | MAJOR HISTOCOMPATIBILITY COMPLEX | TISSUE-SPECIFIC GENES | OLFACTORY RECEPTOR | MAMMALIAN EVOLUTION | Gene Duplication | Multigene Family - genetics | Conserved Sequence - genetics | Vertebrates - genetics | Physical Chromosome Mapping | Genomics | Humans | Long Interspersed Nucleotide Elements - genetics | Mutagenesis - genetics | Synteny | Genes - genetics | Short Interspersed Nucleotide Elements - genetics | RNA, Untranslated - genetics | Sequence Analysis, DNA | Pseudogenes - genetics | Animals | Retroviridae - genetics | DNA Transposable Elements - genetics | Chickens - genetics | Genome | Avian Proteins - genetics | Evolution, Molecular | Birds | Evolution | Genetic diversity | Gene expression | Mammals | Chromosomes | Index Medicus | Research Support; U.S. Gov't; P.H.S | Research Support; U.S. Gov't; Non-P.H.S | Comparative Study | Long Interspersed Nucleotide Elements/genetics | Biology | Avian Proteins/genetics | Vertebrates/genetics | Short Interspersed Nucleotide Elements/genetics | Pseudogenes/genetics | Genetics | Research Support; Non-U.S. Gov't | Biologi | Natural Sciences | Biological Sciences | RNA; Untranslated/genetics | Mutagenesis/genetics | DNA Transposable Elements/genetics | Multigene Family/genetics | Retroviridae/genetics | Sequence Analysis; DNA | Genetik | Genes/genetics | Naturvetenskap | Conserved Sequence/genetics | Evolution; Molecular | Biologiska vetenskaper | Cell and molecular biology | Chickens/genetics | Cell- och molekylärbiologi | phylogenetic analysis | mammalian evolution | tissue-specific genes | brown-norway rat | non-ltr retrotransposons | major histocompatibility complex | olfactory receptor | mouse genome | recent segmental duplications | alcohol-dehydrogenase
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4. Full Text Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes
by Frantz, L.A.F and Schraiber, J.G and Madsen, O and Megens, H.J.W.C and Cagan, A and Bosse, M and Paudel, Y and Crooijmans, R.P.M.A and Larson, G and Groenen, M.A.M
Nature Genetics, ISSN 1061-4036, 2015, Volume 47, Issue 10, pp. 1141 - 1148
Traditionally, the process of domestication is assumed to be initiated by humans, involve few individuals and rely on reproductive isolation between wild and... 
BAYESIAN COMPUTATION | ANALYSIS REVEALS | SUS | GEOMETRIC MORPHOMETRICS | ORIGINS | SHAPE | EVOLUTION | ANIMAL DOMESTICATION | SPECIATION | GENETICS & HEREDITY | ANCIENT DNA | Animals | Animals, Domestic - genetics | Asia | Gene Flow | Europe | Animals, Wild - genetics | Swine - genetics | Genome | Domestication | Genetic research | Genetic aspects | Swine | Index Medicus | Leerstoelgroep Fokkerij en genetica | Fokkerij en Genomica | Animal Breeding and Genomics | WIAS | Fokkerij en Genetica | Animal Breeding and Genetics
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5. Full Text The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
by Huang, Y and Li, Y and Burt, D.W and Chen, H and Groenen, M.A.M and Crooijmans, R.P.M.A and Kraus, R.H.S
Nature Genetics, ISSN 1061-4036, 2013, Volume 45, Issue 7, pp. 776 - 783
The duck (Anas platyrhynchos) is one of the principal natural hosts of influenza A viruses. We present the duck genome sequence and perform deep transcriptome... 
A VIRUS | MAXIMUM-LIKELIHOOD | TRANSMISSION | PROTEIN | POSITIVE SELECTION | GENETICS & HEREDITY | GENE FAMILY EVOLUTION | DUPLICATION | DEFENSINS | PHYLOGENETIC TREES | EXPRESSION | Ducks - genetics | Species Specificity | Genome - physiology | Ducks - virology | Ducks - immunology | Molecular Sequence Data | Transcriptome - genetics | Influenza in Birds - immunology | Phylogeny | Host-Pathogen Interactions - immunology | Animals | Host-Pathogen Interactions - genetics | Influenza in Birds - genetics | Base Sequence | Chickens - genetics | Female | Geese - genetics | Disease Reservoirs | Disease Vectors | Immunity - genetics | Avian influenza viruses | Zebra finch | Genetic aspects | Research | Health aspects | Genomics | Birds | Viruses | Wildfowl | Genomes | Gene expression | Chromosomes | Index Medicus | gene family evolution | phylogenetic trees | defensins | transmission | expression | protein | maximum-likelihood | a virus | positive selection | duplication
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6. Full Text Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology
by Ramos, A and Crooijmans, R.P.M.A and Affara, N.A and Amaral, A.J and Kerstens, H.H.D and Megens, H.J.W.C and Groenen, M.A.M
PLoS One, ISSN 1932-6203, 2009, Volume 4, Issue 8, pp. e6524 - e6524
Background: The dissection of complex traits of economic importance to the pig industry requires the availability of a significant number of genetic markers,... 
BIOLOGY | Genotype | Polymorphism, Single Nucleotide | Animals | Swine - genetics | Species Specificity | Sequence Analysis, DNA - methods | Enzymes | Genetic markers | Pork industry | Genomics | Animal genetic engineering | Genomes | Single nucleotide polymorphisms | Chromosomes | Zoology | Phylogeography | Animal sciences | Economic importance | Domestication | Identification | Single-nucleotide polymorphism | Breeding of animals | Assaying | Design | Studies | Hogs | Genotyping | Gene frequency | Swine | Livestock | Genetic testing | Dissection | Deoxyribonucleic acid--DNA | Polymorphism | Index Medicus | Leerstoelgroep Fokkerij en genetica | Fokkerij en Genomica | Animal Breeding and Genomics | WIAS | Fokkerij en Genetica | Animal Breeding and Genetics | Deoxyribonucleic acid | DNA
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7. Low genetic connectivity in a fouling amphipod among man-made structures in the southern North Sea
by Pieternella C Luttikhuizen and Jan Beermann and Richard P M A Crooijmans and Robbert G Jak and Joop W P Coolen
Marine Ecology Progress Series, ISSN 0171-8630, 01/2019, Volume 615, p. 133
Offshore environments are increasingly invaded by man-made structures that form hard-substrate habitats for many marine species. Examples include oil and gas... 
Cytochrome | Populations | Shipwrecks | Offshore structures | Offshore drilling rigs | Mitochondrial DNA | Aquatic habitats | Population genetics | Work platforms | Gene sequencing | Wind energy | Gas turbines | Species | Turbines | Deoxyribonucleic acid--DNA | Platforms | Fouling | Nucleotide sequence | Natural populations | Population structure | Wrecks | Substrates | Ocean floor | Environments | Cytochrome c | Offshore | DNA | Cytochromes | Connectivity | Offshore engineering | Wind turbines | Aquatic crustaceans
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8. Full Text Regions of Homozygosity in the Porcine Genome: Consequence of Demography and the Recombination Landscape
by Bosse, M and Megens, H.J.W.C and Madsen, O and Paudel, Y and Frantz, L.A.F and Schook, L.B and Crooijmans, R.P.M.A and Groenen, M.A.M
Plos Genetics, ISSN 1553-7404, 2012, Volume 8, Issue 11, pp. e1003100 - e1003100
Inbreeding has long been recognized as a primary cause of fitness reduction in both wild and domesticated populations. Consanguineous matings cause inheritance... 
GENETIC DIVERSITY | CONSERVATION | PIG BREEDS | SNP | GENETICS & HEREDITY | WILD BOAR | DOMESTICATION | EVOLUTIONARY HISTORY | MAP | RUNS | HUMAN-POPULATIONS | Sus scrofa - genetics | Haplotypes - genetics | Homozygote | Animals | Asia | Breeding | Recombination, Genetic | Europe | Inbreeding | High-Throughput Nucleotide Sequencing | Genome | Animal genetics | Heterozygosis | Research | Genomics | Heterozygosity | Haplotypes | Hogs | Demography | Population | Genetic diversity | Genomes | Breeding of animals | Index Medicus | genetic diversity | human-populations | conservation | snp | pig breeds | wild boar | domestication | evolutionary history | runs | map
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9. Full Text The development and characterization of a 60K SNP chip for chicken
by Groenen, M.A.M and Megens, H.J.W.C and Zare, Y and Warren, W.C and Hillier, L.W and Crooijmans, R.P.M.A and Vereijken, A and Okimoto, R and Muir, W.M and Cheng, H.H
BMC Genomics, ISSN 1471-2164, 2011, Volume 12, Issue 1, pp. 274 - 274
Background In livestock species like the chicken, high throughput single nucleotide polymorphism (SNP) genotyping assays are increasingly being used for whole... 
ARRAY | GENOTYPING ASSAY | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | POLYMORPHISM | MAP | GENOME | Animals | Oligonucleotide Array Sequence Analysis | Chickens | Chromosome Mapping - methods | Genotype | Polymorphism, Single Nucleotide | Genetic Markers | High-Throughput Nucleotide Sequencing - methods | Sequence Analysis, DNA - methods | Physiological aspects | Genomes | Genetic aspects | Research | Single nucleotide polymorphisms | Health aspects | Index Medicus | genome | polymorphism | genotyping assay | array | map
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10. Full Text A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate
by Groenen, M.A.M and Wahlberg, O and Foglio, M and Cheng, H.H and Megens, H.J.W.C and Crooijmans, R.P.M.A and Besnier, F and Lathrop, A and Muir, W.M and Wong, G.K and Gut, I and Andersson, L and Medicinska fakulteten and Medicinska och farmaceutiska vetenskapsområdet and Institutionen för medicinsk biokemi och mikrobiologi and Uppsala universitet
Genome Research, ISSN 1088-9051, 2009, Volume 19, Issue 3, pp. 510 - 519
The resolution of the chicken consensus linkage map has been dramatically improved in this study by genotyping 12,945 single nucleotide polymorphisms (SNPs) on... 
FREQUENCIES | BIOCHEMISTRY & MOLECULAR BIOLOGY | SEX | MARKERS | INVERSION | CHROMOSOME | EVOLUTION | POLYMORPHISMS | DIFFERENCE | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | PHYSICAL MAP | GENETIC MAPS | Recombination, Genetic - physiology | Chromosomal Proteins, Non-Histone - metabolism | Cell Cycle Proteins - metabolism | Genotype | Male | Chickens - metabolism | Animals | Chromosomes - genetics | Chromosome Mapping - methods | Sex Factors | Chickens - genetics | Female | Genetic Markers - physiology | Polymorphism, Single Nucleotide | Genome | Chromosome mapping | Chickens | Analysis | Genetic aspects | Research | Single nucleotide polymorphisms | Genetic recombination | Index Medicus | Resource | Biological Sciences | Biology | Biologi | Naturvetenskap | Natural Sciences | Biologiska vetenskaper | genetic maps | physical map | inversion | sex | chromosome | difference | evolution | markers | polymorphisms | frequencies
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11. Full Text Signatures of Diversifying Selection in European Pig Breeds
by Wilkinson, S and Lu, Z.H and Megens, H.J.W.C and Archibald, A.L and Haley, C and Jackson, I.J and Groenen, M.A.M and Crooijmans, R.P.M.A and Ogden, R and Wiener, P
Plos Genetics, ISSN 1553-7404, 2013, Volume 9, Issue 4, pp. e1003453 - e1003453
Following domestication, livestock breeds have experienced intense selection pressures for the development of desirable traits. This has resulted in a large... 
SKIN PIGMENTATION | QUANTITATIVE TRAIT LOCI | ARTIFICIAL SELECTION | FATTY-ACID-COMPOSITION | EAR SIZE | GENETICS & HEREDITY | WILD BOAR | TEAT NUMBER | COAT COLOR | KIT-LIGAND | COMPLEX TRAITS | Sus scrofa - genetics | Phenotype | Animals | Breeding | Swine | Genomics | Selection, Genetic | Polymorphism, Single Nucleotide | Genome | Quantitative Trait Loci | Single nucleotide polymorphisms | Comparative analysis | Observations | Identification and classification | Biological diversity | Index Medicus | kit-ligand | teat number | wild boar | skin pigmentation | complex traits | coat color | quantitative trait loci | fatty-acid-composition | artificial selection | ear size | Hogs | Genetics | Livestock | Genomes
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12. Full Text Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
by Dalloul, R.A and Long, J.A and Zimin, A.V and Aslam, M.L and Crooijmans, R.P.M.A and Megens, H.J.W.C and Groenen, M
PloS Biology, ISSN 1544-9173, 2010, Volume 8, Issue 9, p. e1000475
A synergistic combination of two next-generation sequencing platforms with a detailed comparative BAC physical contig map provided a cost-effective assembly of... 
EVOLUTION | HIGH-THROUGHPUT | MONODELPHIS-DOMESTICA | GALLIFORMES | BIOCHEMISTRY & MOLECULAR BIOLOGY | BIOLOGY | CHICKEN GENOME | GENE FAMILY | DIVERSITY | IDENTIFICATION | MOLECULAR PHYLOGENY | BIRDS | DNA - genetics | Animals | Species Specificity | Turkeys - genetics | Base Sequence | Chromosome Mapping | Polymorphism, Single Nucleotide | Genome | Sequence Analysis, DNA | Sequence Homology, Nucleic Acid | Index Medicus | diversity | galliformes | identification | gene family | high-throughput | molecular phylogeny | monodelphis-domestica | evolution | chicken genome | birds | Genetics | Genomics | Genes | Colleges & universities
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