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condition-responsive control in microbiological orenzymological processes (10) 10
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1. Plant gene silencing
: mechanisms and applications
by Dalmay, Tamas, editor
2017, CABI biotechnology series, ISBN 1780647697, Volume 5, x, 213 pages
Plant gene silencing | Gene Expression Regulation, Plant | Gene Silencing
Book
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2. MicroRNAs in development
: methods and protocols
by Dalmay, Tamas
2011, Methods in molecular biology, ISBN 9781617790836, Volume 732., x, 227
Small interfering RNA | MicroRNAs
Book
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3. MicroRNA detection and target identification
: methods and protocols
by Dalmay, Tamas
2017, Methods in molecular biology, ISBN 1493968645, Volume 1580.
chemistry | MicroRNA | Sequence Analysis, RNA | genetics | MicroRNAs | methods | Computational Biology
Web Resource
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4. MicroRNA detection and target identification
: methods and protocols
by Dalmay, Tamas
2017, Methods in molecular biology, ISBN 1493968645, Volume 1580.
chemistry | Sequence Analysis, RNA | genetics | MicroRNAs | methods | Computational Biology
Web Resource
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5. Full Text Mechanism of miRNA-mediated repression of mRNA translation
by Dalmay, Tamas
Essays in Biochemistry, ISSN 0071-1365, 2013, Volume 54, Issue 1, pp. 29 - 38
MicroRNAs regulate the expression of protein-coding genes in animals and plants. They function by binding to mRNA transcripts with complementary sequences and... 
Translational repression | Seed sequence | MicroRNA | Target recognition | Degradome | RECOGNITION | INITIATION | LET-7 MICRORNA | BIOCHEMISTRY & MOLECULAR BIOLOGY | seed sequence | translational repression | IDENTIFICATION | target recognition | IN-VITRO | INHIBITION | DEADENYLATION | microRNA | TARGETS | degradome | ARABIDOPSIS | Animals | Humans | Gene Expression Regulation | MicroRNAs - metabolism | MicroRNAs - genetics | Protein Biosynthesis - genetics | RNA, Plant - genetics | RNA, Plant - metabolism | RNA Stability - genetics
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6. Full Text Ambient temperature regulates the expression of a small set of sRNAs influencing plant development through NF‐YA2 and YUC2
by Gyula, Péter and Baksa, Ivett and Tóth, Tamás and Mohorianu, Irina and Dalmay, Tamás and Szittya, György
Plant, Cell & Environment, ISSN 0140-7791, 10/2018, Volume 41, Issue 10, pp. 2404 - 2417
Plants substantially alter their developmental programme upon changes in the ambient temperature. The 21–24 nt small RNAs (sRNAs) are important gene expression... 
Arabidopsis thaliana | phasiRNA | tRNA fragments | NF‐YA2, YUC2 | ambient temperature | miRNA | degradome | siRNA | NF-YA2, YUC2 | FLOWERING-TIME | YUC2 | IDENTIFICATION | PLANT SCIENCES | BIOGENESIS | DIRECTED DNA-METHYLATION | AUXIN BIOSYNTHESIS | TRANS-ACTING SIRNAS | TARGETS | MIRNAS | ARABIDOPSIS | NF-YA2 | MICRORNA | CCAAT-Binding Factor - physiology | Arabidopsis Proteins - physiology | Temperature | Arabidopsis - growth & development | RNA, Small Untranslated - physiology | MicroRNAs - metabolism | Mixed Function Oxygenases - metabolism | RNA, Plant - genetics | RNA, Plant - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | Blotting, Northern | CCAAT-Binding Factor - metabolism | Sequence Analysis, RNA | RNA, Plant - physiology | Gene Expression Regulation, Plant | RNA, Small Untranslated - genetics | MicroRNAs - genetics | MicroRNAs - physiology | Mixed Function Oxygenases - physiology | Real-Time Polymerase Chain Reaction | RNA, Small Untranslated - metabolism | Epigenetic inheritance | Gene expression | Analysis | Transfer RNA | Temperature dependence | Regulators | Target recognition | tRNA | Transcription | Genes | MiRNA | Homeostasis | Biosynthesis | Loci | Developmental stages | Plant tissues | Ambient temperature | Temperature effects | Flowering | Adaptation
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7. MicroRNAs in development
: methods and protocols
by Dalmay, Tamas
2011, Methods in molecular biology, ISBN 9781617790836, Volume 732.
MicroRNAs | Small interfering RNA
Web Resource
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8. Full Text Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction
by Navarro, Beatriz and Pantaleo, Vitantonio and Gisel, Andreas and Moxon, Simon and Dalmary, Tamas and Bisztray, Gyögy and Di Serio, Francesco and Burgyán, József
PLoS ONE, ISSN 1932-6203, 11/2009, Volume 4, Issue 11, p. e7686
Background: Viroids are circular, highly structured, non-protein-coding RNAs that, usurping cellular enzymes and escaping host defense mechanisms, are able to... 
REPLICATION | GENE | PATHWAY | MULTIDISCIPLINARY SCIENCES | IN-VIVO | HOP | SHORT INTERFERING RNAS | ARABIDOPSIS | ACCUMULATION | IDENTIFICATION | GENOME | Oligonucleotides - chemistry | DNA Primers - genetics | Viroids - genetics | RNA, Plant - genetics | Blotting, Northern | Sequence Alignment | Plant Diseases - virology | Plants - genetics | RNA Interference | Plant Diseases - genetics | MicroRNAs - genetics | Models, Genetic | Sequence Analysis, DNA - methods | Vitis - genetics | Infection | Enzymes | Analysis | Genes | Viroids | Methylation | Gene expression | Health aspects | Nucleotide sequence | Fines & penalties | RNA-mediated interference | Hot spots | Viruses | Biosynthesis | Genomes | RNA polymerase | Nucleic acids | Ribonucleic acid--RNA | Stunt | Host plants | MicroRNAs | DNA methylation | Genesis | Flowers & plants | Plant viruses | Deoxyribonucleic acid--DNA | Cellular structure | Viral infections | RNA | Deoxyribonucleic acid | Ribonucleic acid | DNA
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9. Full Text Identification of grapevine microRNAs and their targets using high‐throughput sequencing and degradome analysis
by Pantaleo, Vitantonio and Szittya, Gyorgy and Moxon, Simon and Miozzi, Laura and Moulton, Vincent and Dalmay, Tamas and Burgyan, Jozsef
The Plant Journal, ISSN 0960-7412, 06/2010, Volume 62, Issue 6, pp. 960 - 976
Summary In plants, microRNAs (miRNAs) comprise one of three classes of small RNAs regulating gene expression at the post‐transcriptional level. Many plant... 
high‐throughput sequencing | RNA silencing | miRNAs | Vitis vinifera | target identification | MiRNAs | High-throughput sequencing | Target identification | SMALL RNAS | DNA METHYLATION | PLANT SCIENCES | TRANSLATIONAL INHIBITION | ARABIDOPSIS MICRORNAS | LAND PLANTS | EVOLUTION | GENES | TRANS-ACTING SIRNAS | PLANT MICRORNAS | high-throughput sequencing | RICE | Sequence Analysis, RNA - methods | Computational Biology - methods | Gene Library | Species Specificity | Gene Expression Regulation, Plant | Conserved Sequence | Gene Expression Profiling | MicroRNAs - genetics | RNA, Plant - genetics | Vitis - genetics | Messenger RNA | Grapes | Gene expression | Analysis | Computational mathematics | Ribonucleic acid--RNA | Molecular biology | Botany
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10. Full Text Sulphur starvation induces the expression of microRNA‐395 and one of its target genes but in different cell types
by Kawashima, Cintia Goulart and Yoshimoto, Naoko and Maruyama‐Nakashita, Akiko and Tsuchiya, Yumiko N and Saito, Kazuki and Takahashi, Hideki and Dalmay, Tamas
The Plant Journal, ISSN 0960-7412, 01/2009, Volume 57, Issue 2, pp. 313 - 321
Summary Plants play an important role in the global sulphur cycle because they assimilate sulphur from the environment and build it into methionine and... 
Arabidopsis thaliana | sulphur assimilation | SULTR2;1 | SLIM 1 | miRNA‐395 | Sulphur assimilation | miRNA-395 | ARABIDOPSIS-THALIANA | SMALL RNAS | IDENTIFICATION | ASSIMILATION | PLANT SCIENCES | SULFATE TRANSPORTERS | PATHWAY | ROLES | MIRNA | SULTR2 | PLANTS | NUTRITION | Sulfur - metabolism | Arabidopsis Proteins - genetics | Plant Roots - metabolism | Plants, Genetically Modified - genetics | Genes, Plant | Plant Roots - genetics | MicroRNAs - metabolism | RNA, Messenger - metabolism | RNA, Plant - metabolism | Anion Transport Proteins - metabolism | Arabidopsis - metabolism | Arabidopsis - genetics | Arabidopsis Proteins - metabolism | DNA-Binding Proteins - metabolism | Transcription Factors - metabolism | Plants, Genetically Modified - metabolism | Plant Leaves - genetics | Plant Leaves - metabolism | Gene Expression Regulation, Plant | Anion Transport Proteins - genetics | Genetic research | Cysteine | Messenger RNA | Universities and colleges | Sulfur | Methionine | Cellular biology | Gene expression | Ribonucleic acid--RNA | Botany
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11. Full Text miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula
by Inês Trindade and Cláudio Capitão and Tamas Dalmay and Manuel Pedro Fevereiro and Dulce Metelo dos Santos
Planta, ISSN 0032-0935, 2/2010, Volume 231, Issue 3, pp. 705 - 716
Plant microRNAs have been implicated in various abiotic stress responses. We identified several conserved microRNAs that showed differential expression in... 
Up regulation | Oxidative stress | MicroRNA | Messenger RNA | RNA | Genes | Plant roots | Gene expression regulation | Plants | Down regulation | Life Sciences | MicroRNA398 | Water deficit | Forestry | Medicago | Ecology | Agriculture | MicroRNA408 | Differential expression | Plant Sciences | ARABIDOPSIS-THALIANA | COPPER HOMEOSTASIS | SMALL RNAS | SEED-GERMINATION | NODULE DEVELOPMENT | DOWN-REGULATION | MICRORNAS | PLANT SCIENCES | KANADI GENES | CLASS IIIHD-ZIP | ABSCISIC-ACID | Water | Triterpenes | Up-Regulation | Saponins - genetics | Computational Biology | Copper - metabolism | Homeostasis | MicroRNAs - metabolism | MicroRNAs - genetics | Plant Proteins - metabolism | Genome, Plant | MicroRNAs - physiology | Proteins | Cytochrome c | Legumes | Beans | Cytochrome oxidase | Superoxide | Mimosaceae
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12. Full Text Identification of miRNAs with potential roles in regulation of anther development and male-sterility in 7B-1 male-sterile tomato mutant
by Omidvar, Vahid and Mohorianu, Irina and Dalmay, Tamas and Fellner, Martin
BMC Genomics, ISSN 1471-2164, 10/2015, Volume 16, Issue 1, p. 878
Background: The 7B-1 tomato line (Solanum lycopersicum cv. Rutgers) is a photoperiod-sensitive male-sterile mutant, with potential application in hybrid seed... 
7B-1 mutation | Another development | Meiosis | Male-sterility | Abiotic stress | Solanum lycopersicum | ARABIDOPSIS-THALIANA | AUXIN RESPONSE FACTORS | SMALL RNA DATASETS | HYPOCOTYL ELONGATION | DEGRADOME ANALYSIS | POLLEN DEVELOPMENT | MOTHER CELL-WALL | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | GENETICS & HEREDITY | GENE-EXPRESSION | FLORAL DEVELOPMENT | TRANSCRIPTION FACTOR | Plant Infertility - genetics | Lycopersicon esculentum - genetics | Plant Infertility - physiology | Flowers - physiology | Gene Expression Profiling | MicroRNAs - genetics | Lycopersicon esculentum - physiology | Flowers - genetics | Genetic aspects | MicroRNA | Research | Tomatoes | Analysis
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13. Full Text Short RNAs in Tomato
by Tamas Dalmay
植物学报：英文版, ISSN 1672-9072, 2010, Volume 52, Issue 4, pp. 388 - 392
Short RNAs are 20-24 nucleotide long non-coding RNA molecules generated by one of the Dicer-like enzymes. They recognize specific RNA or DNA sequences and... 
DNA序列 | 番茄 | miRNAs | 非编码RNA | 果实发育 | microRNA | Dicer酶 | 果实成熟 | BIOGENESIS | MECHANISM | BIOCHEMISTRY & MOLECULAR BIOLOGY | GENES | TRANS-ACTING SIRNAS | TARGETS | MIRNAS | ARABIDOPSIS | MICRORNAS | IDENTIFICATION | LEAF DEVELOPMENT | PLANT SCIENCES | Lycopersicon esculentum - metabolism | Gene Expression Regulation, Plant - physiology | RNA, Plant - physiology | Gene Expression Regulation, Plant - genetics | Lycopersicon esculentum - genetics | MicroRNAs - genetics | MicroRNAs - physiology | RNA, Plant - genetics | RNA | Enzymes | Analysis
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14. Full Text A toolkit for analysing large-scale plant small RNA datasets
by Moxon, Simon and Schwach, Frank and Dalmay, Tamas and MacLean, Dan and Studholme, David J and Moulton, Vincent
Bioinformatics, ISSN 1367-4803, 10/2008, Volume 24, Issue 19, pp. 2252 - 2253
Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences.... 
SEQUENCES | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | BIOCHEMICAL RESEARCH METHODS | MATHEMATICAL & COMPUTATIONAL BIOLOGY | SIRNA BIOGENESIS | MICRORNAS | ARABIDOPSIS | Computational Biology - methods | MicroRNAs - metabolism | MicroRNAs - genetics | Software | RNA, Plant - genetics | RNA, Plant - metabolism | Databases, Nucleic Acid
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15. Full Text High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
by Szittya, Gyorgy and Moxon, Simon and Santos, Dulce M and Jing, Runchun and Fevereiro, Manuel P.S and Moulton, Vincent and Dalmay, Tamas
BMC Genomics, ISSN 1471-2164, 12/2008, Volume 9, Issue 1, pp. 593 - 593
Background: High-throughput sequencing technology is capable to identify novel short RNAs in plant species. We used Solexa sequencing to find new microRNAs in... 
ENDOGENOUS SIRNAS | ARABIDOPSIS-THALIANA | BIOGENESIS | BIOTECHNOLOGY & APPLIED MICROBIOLOGY | DIVERSE | GENETICS & HEREDITY | TRANS-ACTING SIRNAS | PLANTS | MICRORNAS | STRESS | Medicago truncatula - genetics | Sequence Analysis, RNA | Gene Library | Genes, Plant | MicroRNAs - genetics | Genome, Plant | RNA, Plant - genetics | Legumes | Beans | RNA | Genetic aspects | Research | Nucleotide sequencing | Gene expression | Mimosaceae
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16. Full Text Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss
by Mencía, Angeles and Modamio-Høybjør, Silvia and Redshaw, Nick and Morín, Matías and Mayo-Merino, Fernando and Olavarrieta, Leticia and Aguirre, Luis A and Del Castillo, Ignacio and Steel, Karen P and Dalmay, Tamas and Moreno, Felipe and Moreno-Pelayo, Miguel Angel
Nature Genetics, ISSN 1061-4036, 05/2009, Volume 41, Issue 5, pp. 609 - 613
MicroRNAs (miRNAs) bind to complementary sites in their target mRNAs to mediate post-transcriptional repression(1,2), with the specificity of target... 
CELLS | SITE | GENE | RECOGNITION | RNA | MIRNA | DISEASE | GENETICS & HEREDITY | MICRORNA TARGETS | EXPRESSION | Hair Cells, Auditory - metabolism | Humans | Middle Aged | Molecular Sequence Data | Male | RNA, Messenger - metabolism | Hearing Loss - genetics | Pedigree | Base Sequence | Adolescent | Adult | Female | Aged | MicroRNAs - genetics | Mutation | Child | MicroRNAs - chemistry | Gene mutations | Genetic aspects | Research | Single nucleotide polymorphisms | Health aspects | Risk factors | Hearing loss | Genetics | Scientific imaging | Biomedical research | Hearing impairment | Binding sites
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