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Scientific Reports, ISSN 2045-2322, 12/2018, Volume 8, Issue 1, pp. 10872 - 17
The biological interpretation of gene lists with interesting shared properties, such as up-or down-regulation in a particular experiment, is typically... 
ENRICHMENT | TRANSCRIPTOME | LISTS | MULTIDISCIPLINARY SCIENCES | Statistical analysis | Stochasticity | Ontology | Ribonucleic acid--RNA
Journal Article
PLoS ONE, ISSN 1932-6203, 02/2014, Volume 9, Issue 2, p. e88116
Transcriptional control of the human immunodeficiency virus type 1 (HIV-1) promoter, the long terminal repeat (LTR), is achieved by interactions with... 
ALPHA C/EBP-ALPHA | SWI/SNF COMPLEX | MULTIDISCIPLINARY SCIENCES | IMMUNODEFICIENCY-VIRUS TYPE-1 | GENE-EXPRESSION | LONG-TERMINAL REPEAT | I-HYPERSENSITIVE SITES | TRANSCRIPTION FACTOR | LOCATED DOWNSTREAM | NFAT | BETA | CCAAT-Enhancer-Binding Proteins - metabolism | Cell Line | Conserved Sequence - genetics | Protein Binding - genetics | Monocytes - cytology | Humans | NFATC Transcription Factors - metabolism | HIV Long Terminal Repeat - genetics | Molecular Sequence Data | Monocytes - metabolism | Macrophages - cytology | HIV-1 - genetics | Cell Lineage | Macrophages - metabolism | Protein Isoforms - metabolism | Base Sequence | Transcription Initiation Site | Transcription, Genetic | Binding Sites | Proteins | Interleukins | Analysis | T cells | HIV (Viruses) | Macrophages | Protein binding | Neurosciences | Transcription factors | Cyclosporins | Interleukin | Viruses | Lymphocytes T | CCAAT/enhancer-binding protein | Dephosphorylation | NF-AT protein | Kinases | Long terminal repeat | Interleukin 6 | Immunology | Lymphocytes | Rodents | Human immunodeficiency virus--HIV | Cell cycle | Downstream | Deoxyribonucleic acid--DNA | Translocation | Cytokines | Nucleotide sequence | Cyclin-dependent kinases | Upstream | RNA polymerase | Gene expression | Nuclear transport | Virology | Medicine | Monocytes | Infectious diseases | Isoforms | Affinity | Binding sites | Deoxyribonucleic acid | HIV | DNA | Human immunodeficiency virus
Journal Article
FRONTIERS IN MICROBIOLOGY, ISSN 1664-302X, 12/2018, Volume 9, p. 2940
Antiretroviral therapy has prolonged the lives of people living with human immunodeficiency virus type 1 (HIV-1), transforming the disease into one that can be... 
HIV-1 | CRISPR/Cas9 | ENVELOPE GLYCOPROTEIN | CXCR4 | CD4(+) T-CELLS | MICROBIOLOGY | CD4 | TRANSMISSION | CRISPR-CAS9 NUCLEASES | RESISTANCE | CCR5 | STEM-CELL TRANSPLANTATION | TYPE-1 | HEMATOPOIETIC STEM | Prevention | Antiviral agents | Analysis | Clinical trials | Dosage and administration | Genetic aspects | HIV infection | Risk factors
Journal Article
PLoS ONE, ISSN 1932-6203, 05/2016, Volume 11, Issue 5, p. e0155382
As a result of antiretroviral therapeutic strategies, human immunodeficiency virus type 1 (HIV-1) infection has become a long-term clinically manageable... 
CELLS | INFECTED INDIVIDUALS | TRANSMISSION | EVOLUTION | REPLICATION | SEQUENCES | MULTIDISCIPLINARY SCIENCES | IMMUNODEFICIENCY-VIRUS TYPE-1 | NEUROCOGNITIVE DISORDERS | EXPRESSION | CHALLENGES | HIV Infections - blood | CD4-Positive T-Lymphocytes - cytology | HIV Infections - virology | Humans | Middle Aged | Male | CD4 Lymphocyte Count | Phylogeny | HIV-1 - genetics | Viral Load | Antiretroviral Therapy, Highly Active | Genetic Variation | DNA Mutational Analysis | Polymerase Chain Reaction | Adult | Anti-HIV Agents - therapeutic use | Female | HIV Infections - drug therapy | Mutation | DNA, Viral - genetics | Cohort Studies | Highly active antiretroviral therapy | Antiviral agents | Care and treatment | Genetic variation | Analysis | Dosage and administration | Genetic aspects | Research | HIV (Viruses) | Health aspects | Risk factors | Neurosciences | Central nervous system | Chronic infection | Viruses | Lymphocytes T | Genomes | Mutation rates | Infections | Activation | Nucleotides | Blood | Gene sequencing | Illnesses | Immunology | Acquired immune deficiency syndrome--AIDS | Antiretroviral agents | Human immunodeficiency virus--HIV | Peripheral blood | Phylogenetics | Drug therapy | Bioinformatics | Deoxyribonucleic acid--DNA | Life expectancy | Therapeutic applications | Genetic diversity | Patients | Disease control | Low level | Antiretroviral therapy | Virology | CD4 antigen | Medicine | Tat protein | Infectious diseases | Acquired immune deficiency syndrome | Deoxyribonucleic acid | AIDS | HIV | DNA | Human immunodeficiency virus
Journal Article
Cellular and Molecular Bioengineering, ISSN 1865-5025, 10/2017, Volume 10, Issue 5, pp. 451 - 462
Journal Article
PLoS ONE, ISSN 1932-6203, 04/2016, Volume 11, Issue 4, p. e0150835
Journal Article
Current HIV Research, ISSN 1570-162X, 09/2016, Volume 14, Issue 5, pp. 431 - 441
Background: It is well established that antiretroviral therapy (ART), while highly effective in controlling HIV replication, cannot eliminate virus from the... 
HIV-1 | Reservoir | Excision | Genetic variation | Latency | excision | INFECTIOUS DISEASES | HISTONE DEACETYLASE INHIBITOR | FEMALE GENITAL-TRACT | latency | SYNERGISTIC ACTIVATION | genetic variation | CD4(+) T-CELLS | ANTIRETROVIRAL THERAPY | VALPROIC ACID | IMMUNOLOGY | HUMAN-IMMUNODEFICIENCY-VIRUS | CEREBROSPINAL-FLUID | VIROLOGY | CRISPR/CAS9 SYSTEM | INTEGRATED HIV-1 | reservoir
Journal Article
International Journal of Cancer, ISSN 0020-7136, 06/2011, Volume 128, Issue 12, pp. 2881 - 2891
The global gene expression analysis of cancer and healthy tissues typically results in large numbers of genes that are significantly altered in cancer. Such... 
microarray | cancer | meta‐analysis | large‐scale | meta-analysis | large-scale | METAANALYSIS | ONCOLOGY | EXPLORATION | NCBI | REPOSITORY | EXPRESSION PROFILES | Neoplasms - classification | Neoplasms - genetics | Oligonucleotide Array Sequence Analysis | Humans
Journal Article
by Dale, Ryan and Grüning, Björn and Sjödin, Andreas and Rowe, Jillian and Chapman, Brad A and Tomkins-Tinch, Christopher H and Valieris, Renan and Batut, Bérénice and Caprez, Adam and Cokelaer, Thomas and Yusuf, Dilmurat and Beauchamp, Kyle A and Brinda, Karel and Wollmann, Thomas and Corguillé, Gildas Le and Ryan, Devon and Bretaudeau, Anthony and Hoogstrate, Youri and Pedersen, Brent S and Heeringen, Simon van and Raden, Martin and Luna-Valero, Sebastian and Soranzo, Nicola and Smet, Matthias De and Kuster, Greg Von and Kirchner, Rory and Pantano, Lorena and Charlop-Powers, Zachary and Thornton, Kevin and Martin, Marcel and Beek, Marius van den and Maticzka, Daniel and Miladi, Milad and Will, Sebastian and Gravouil, Kévin and Unneberg, Per and Brueffer, Christian and Blank, Clemens and Piro, Vitor C and Wolff, Joachim and Antao, Tiago and Gladman, Simon and Shlyakhter, Ilya and Hollander, Mattias de and Mabon, Philip and Shen, Wei and Boekel, Jorrit and Holtgrewe, Manuel and Bouvier, Dave and de Ruiter, Julian R and Cabral, Jennifer and Choudhary, Saket and Harding, Nicholas and Kleinkauf, Robert and Enns, Eric and Eggenhofer, Florian and Brown, Joseph and Cock, Peter J. A and Timm, Henning and Thomas, Cristel and Zhang, Xiao-Ou and Chambers, Matt and Turaga, Nitesh and Seiler, Enrico and Brislawn, Colin and Pruesse, Elmar and Fallmann, Jörg and Kelleher, Jerome and Nguyen, Hai and Parsons, Lance and Fang, Zhuoqing and Stovner, Endre Bakken and Stoler, Nicholas and Ye, Simon and Wohlers, Inken and Farouni, Rick and Freeberg, Mallory and Johnson, James E and Bargull, Marcel and Kensche, Philip Reiner and Webster, Timothy H and Eppley, John M and Stahl, Christoph and Rose, Alexander S and Reynolds, Alex and Wang, Liang-Bo and Garnier, Xavier and Dirmeier, Simon and Knudsen, Michael and Taylor, James and Srivastava, Avi and Rai, Vivek and Agren, Rasmus and Junge, Alexander and Guimera, Roman Valls and Khan, Aziz and Schmeier, Sebastian and He, Guowei and Pinello, Luca and Hägglund, Emil and ... and Bioconda Team and The Bioconda Team and Umeå universitet and Teknisk-naturvetenskapliga fakulteten and Kemiska institutionen
Nature Methods, ISSN 1548-7091, 07/2018, Volume 15, Issue 7, pp. 475 - 476
Journal Article